RLG00000001835

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001745
Physical Location & Seq
Forward (+)
21537528 .. 21539915
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001835

Sequence Viewer

Length: 432 bp
ATGTCGCTTATGTATGAACCAGTTGATACTCAAACCTCAGAAGAACAAATGTGTGTTCTGAGTCCTGGAGATCGTTGTAGTATATATGGATCAAATTGCTCCCAATGGATTATTGGAATGGAGATTTTGAAGCCTGACATGTTTCTAAAGAAGATGGAGCGAGAGGTTAGAAGAAGAGGAATAGGCAGAGGAGAGACAAGTATTGTTGTGGATGTGGGGCGAGACAGAGATGGAGCGGCTGGGGCAGGTAGGGCGGTCGTGGAGAGAGAGTCGGACGGACTGAGCCGACGGGGAGGATCTGGCGAGGCTCACGTGCGGGGGAGAGGCGACGTGTGTGAAGAAACCGCCGGCGGAGGGGGTGGAGAAGCTAGAAGTGGAGGAGGCAAAGCCGGTGGAGGAGGAGTGGGAGGTGTAGAACCTTCCGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

14.84

Weight (kDa)

5.18

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AccBSI CCGCTC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 5 cut(s) 236, 254, 316, 345, 351
AclWI GGATC 2 cut(s) 97, 304
AcvI CACGTG 1 cut(s) 313
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 2 cut(s) 138, 330
AgsI TTSAA 1 cut(s) 130
AjiI CACGTC 1 cut(s) 331
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 1 cut(s) 368
AluI AGCT 1 cut(s) 368
Alw26I GTCTC 2 cut(s) 188, 216
AlwI GGATC 2 cut(s) 97, 304
Aor13HI TCCGGA 1 cut(s) 422
BbrPI CACGTG 1 cut(s) 313
BccI CCATC 2 cut(s) 148, 224
BciT130I CCWGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 188, 216
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 236
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 331
BmrFI CCNGG 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 422
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 387, 417
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse118I RCCGGY 2 cut(s) 347, 389
Bse1I ACTGG 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 50, 51, 272
BseNI ACTGG 1 cut(s) 20
BseRI GAGGAG 4 cut(s) 204, 393, 411, 414
BseYI CCCAGC 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 3 cut(s) 348, 390, 423
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 188, 216
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 3 cut(s) 70, 89, 296
BspACI CCGC 5 cut(s) 236, 254, 316, 345, 351
BspCNI CTCAG 3 cut(s) 50, 51, 273
BspEI TCCGGA 1 cut(s) 422
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 97, 304
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 347, 389
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 2 cut(s) 347, 389
BssMI GATC 3 cut(s) 70, 89, 296
Bst2UI CCWGG 1 cut(s) 66
Bst6I CTCTTC 1 cut(s) 169
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 37, 59, 281
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 3 cut(s) 73, 92, 299
BstMAI GTCTC 2 cut(s) 188, 216
BstMBI GATC 3 cut(s) 70, 89, 296
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 2 cut(s) 242, 251
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 349
Cfr10I RCCGGY 2 cut(s) 347, 389
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 1 cut(s) 139
CviJI RGCY 6 cut(s) 133, 239, 285, 308, 368, 389
CviKI_1 RGCY 6 cut(s) 133, 239, 285, 308, 368, 389
DdeI CTNAG 3 cut(s) 37, 59, 281
DpnI GATC 3 cut(s) 72, 91, 298
DpnII GATC 3 cut(s) 70, 89, 296
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 366
Eco72I CACGTG 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 64
FaeI CATG 1 cut(s) 142
FaiI YATR 6 cut(s) 11, 15, 83, 85, 87, 140
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 369
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 243
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 3 cut(s) 348, 390, 423
Hin1II CATG 1 cut(s) 142
HinfI GANTC 2 cut(s) 61, 269
HpaII CCGG 3 cut(s) 348, 390, 423
Hpy188I TCNGA 3 cut(s) 40, 60, 274
Hpy188III TCNNGA 1 cut(s) 423
Hpy99I CGWCG 2 cut(s) 291, 332
HpyAV CCTTC 1 cut(s) 429
HpyCH4IV ACGT 2 cut(s) 312, 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 251
HpyF3I CTNAG 3 cut(s) 37, 59, 281
HpySE526I ACGT 2 cut(s) 312, 330
Hsp92II CATG 1 cut(s) 142
Kpn2I TCCGGA 1 cut(s) 422
KroI GCCGGC 1 cut(s) 347
KroNI GCCGGC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 70, 89, 296
LmnI GCTCC 3 cut(s) 104, 157, 233
LpnPI CCDG 9 cut(s) 33, 51, 78, 147, 225, 231, 285, 361, 403
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 312, 330
MalI GATC 3 cut(s) 72, 91, 298
MbiI CCGCTC 1 cut(s) 236
MboI GATC 3 cut(s) 70, 89, 296
MboII GAAGA 5 cut(s) 53, 163, 183, 186, 350
MflI RGATCY 1 cut(s) 296
MluCI AATT 1 cut(s) 94
MlyI GAGTC 2 cut(s) 70, 278
MmeI TCCRAC 1 cut(s) 252
MreI CGCCGGCG 1 cut(s) 347
MroI TCCGGA 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 347
MspI CCGG 3 cut(s) 348, 390, 423
MspR9I CCNGG 1 cut(s) 66
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 242, 251
NaeI GCCGGC 1 cut(s) 349
NdeII GATC 3 cut(s) 70, 89, 296
NgoMIV GCCGGC 1 cut(s) 347
NlaIII CATG 1 cut(s) 142
NspI RCATGY 1 cut(s) 142
PciI ACATGT 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 2 cut(s) 69, 277
PmaCI CACGTG 1 cut(s) 313
PmlI CACGTG 1 cut(s) 313
PpsI GAGTC 2 cut(s) 69, 277
Ppu21I YACGTR 1 cut(s) 313
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 64
PspCI CACGTG 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 296
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 3 cut(s) 70, 89, 296
SchI GAGTC 2 cut(s) 70, 278
ScrFI CCNGG 1 cut(s) 66
SetI ASST 8 cut(s) 38, 168, 250, 315, 333, 370, 412, 421
SgrAI CRCCGGYG 1 cut(s) 347
Sse9I AATT 1 cut(s) 94
SsiI CCGC 5 cut(s) 236, 254, 316, 345, 351
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 64
TaiI ACGT 2 cut(s) 315, 333
TasI AATT 1 cut(s) 94
TauI GCSGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 291
XceI RCATGY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.