RchiOBHm_Chr6g0260751

Family of unknown function (DUF716)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
15697225 .. 15697407
183 bp
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UTR
Exon/CDS
Intron
PRQ23385

Sequence Viewer

Length: 183 bp
ATGGGCACGTTCATTGGGCACATAGTACCTGGCTTTACCCTCACCCTTCTTGGTTTATGGCACACTGCCAACACTATCAGATCTTATTTTCTCAAAGGCCCTAGTAACTTTGGAGTAAGGTTTTGGTACCCATTGAACTGCCCTTTTTCCAAAATTAAACACTTGGAACTCATTTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.91

Weight (kDa)

9.86

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AfaI GTAC 2 cut(s) 27, 128
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 28
AoxI GGCC 1 cut(s) 97
Asp718I GGTACC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 8, 21
BanI GGYRCC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 30
BfaI CTAG 1 cut(s) 102
BglII AGATCT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 8, 21
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 126
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 8, 21
Bsp143I GATC 1 cut(s) 80
BspANI GGCC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 126
BssMI GATC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 30
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSLI GKGCMC 2 cut(s) 8, 21
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 26, 127
CviJI RGCY 2 cut(s) 33, 99
CviKI_1 RGCY 2 cut(s) 33, 99
CviQI GTAC 2 cut(s) 26, 127
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 28
FaiI YATR 4 cut(s) 23, 58, 179, 181
FauNDI CATATG 1 cut(s) 179
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 99
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 8
KpnI GGTACC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 15, 42
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 8, 21
MluCI AATT 1 cut(s) 153
MnlI CCTC 1 cut(s) 50
MseI TTAA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 179
NdeII GATC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 27, 128
RsaNI GTAC 2 cut(s) 26, 127
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 8, 21
SetI ASST 3 cut(s) 11, 31, 122
SgeI CNNG 6 cut(s) 19, 41, 42, 62, 114, 175
Sse9I AATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 28
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 153
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 70
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.