Rmu_sc0012140.1_g000021

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012140.1
OG0001745
Physical Location & Seq
Forward (+)
71360 .. 72386
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012140.1_g000021.1.cds

Sequence Viewer

Length: 384 bp
atggtccagttgacaactatagctatgcagagcaacgattccagcaggttgtcgaatctaagtatatcatggaggatcattctgcagaaccggaacctggcagtccagccttacttgctcagtgacgccaccgtggccgccgccatcaaggcaggatatcggcaattcggcatattgattgtgctccactctatggcaatgagaaggaggtatcaattggaattgtgtaagaaagctttggaggagaactcaattgtgtatctggaaactggttgcggaaagatccacatagccgtgttgcttatgtacgaaccagttgatactcaaacctcagtagaacatatgtgtgttctaagtcctgcaagtcacgtccccagttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

127

Amino Acids

14.24

Weight (kDa)

8.51

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 36
AccB7I CCANNNNNTGG 1 cut(s) 193
AciI CCGC 3 cut(s) 138, 141, 276
AclWI GGATC 2 cut(s) 83, 277
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 97, 193
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 2 cut(s) 23, 236
AluI AGCT 2 cut(s) 23, 236
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 2 cut(s) 83, 277
AlwNI CAGNNNCTG 1 cut(s) 381
AoxI GGCC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 186
BccI CCATC 1 cut(s) 152
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 98
BfmI CTRYAG 2 cut(s) 18, 83
BfuAI ACCTGC 1 cut(s) 36
BglI GCCNNNNNGGC 2 cut(s) 134, 149
BisI GCNGC 2 cut(s) 138, 141
BlsI GCNGC 2 cut(s) 139, 142
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 98
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 90
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 193
Bse1I ACTGG 4 cut(s) 7, 274, 314, 375
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 97, 193
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 133, 345
BseNI ACTGG 4 cut(s) 7, 274, 314, 375
BseRI GAGGAG 1 cut(s) 257
BshFI GGCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 97, 193
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 75, 282
BspACI CCGC 3 cut(s) 138, 141, 276
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 132, 344
BspLI GGNNCC 1 cut(s) 95
BspMAI CTGCAG 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 36
BspPI GGATC 2 cut(s) 83, 277
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 4 cut(s) 7, 274, 314, 375
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 75, 282
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 59, 119, 331, 353
BstDSI CCRYGG 1 cut(s) 132
BstKTI GATC 2 cut(s) 78, 285
BstMBI GATC 2 cut(s) 75, 282
BstMWI GCNNNNNNNGC 3 cut(s) 115, 134, 149
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 2 cut(s) 18, 83
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 132
BtrI CACGTC 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 36
CaiI CAGNNNCTG 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 69
CviJI RGCY 5 cut(s) 23, 109, 137, 236, 293
CviKI_1 RGCY 5 cut(s) 23, 109, 137, 236, 293
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 4 cut(s) 59, 119, 331, 353
DpnI GATC 2 cut(s) 77, 284
DpnII GATC 2 cut(s) 75, 282
EaeI YGGCCR 1 cut(s) 135
Eco32I GATATC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 158
FaeI CATG 1 cut(s) 72
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 68
FauNDI CATATG 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 138, 141
Fsp4HI GCNGC 2 cut(s) 138, 141
GluI GCNGC 2 cut(s) 138, 141
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 91
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 72
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 38, 55
HpaII CCGG 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 3 cut(s) 28, 85, 362
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 134, 149
HpyF3I CTNAG 4 cut(s) 59, 119, 331, 353
HpySE526I ACGT 1 cut(s) 369
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 72
Kzo9I GATC 2 cut(s) 75, 282
LmnI GCTCC 1 cut(s) 189
MaeII ACGT 1 cut(s) 369
MaeIII GTNAC 3 cut(s) 122, 365, 377
MalI GATC 2 cut(s) 77, 284
MboI GATC 2 cut(s) 75, 282
MfeI CAATTG 2 cut(s) 215, 252
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 4 cut(s) 164, 215, 221, 252
MnlI CCTC 4 cut(s) 66, 201, 235, 340
MslI CAYNNNNRTG 2 cut(s) 293, 345
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 2 cut(s) 215, 252
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 115, 134, 149
NdeI CATATG 1 cut(s) 342
NdeII GATC 2 cut(s) 75, 282
NlaIII CATG 1 cut(s) 72
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 2 cut(s) 122, 365
PfeI GAWTC 2 cut(s) 38, 55
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 2 cut(s) 139, 142
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 2 cut(s) 293, 345
SatI GCNGC 2 cut(s) 138, 141
Sau3AI GATC 2 cut(s) 75, 282
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 186
SetI ASST 7 cut(s) 25, 50, 99, 212, 238, 332, 372
SfcI CTRYAG 2 cut(s) 18, 83
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 293, 345
Sse9I AATT 4 cut(s) 164, 215, 221, 252
SsiI CCGC 3 cut(s) 138, 141, 276
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 1 cut(s) 372
TaqI TCGA 1 cut(s) 53
TasI AATT 4 cut(s) 164, 215, 221, 252
TauI GCSGC 2 cut(s) 140, 143
TfiI GAWTC 2 cut(s) 38, 55
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 2 cut(s) 122, 365
Tsp45I GTSAC 2 cut(s) 122, 365
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 4
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.