Rmu_sc0000588.1_g000031

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000588.1
Physical Location & Seq
Reverse (-)
109706 .. 110376
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000588.1_g000031.1.cds

Sequence Viewer

Length: 297 bp
atgccttctttgggcttagggacctggcaatccagccctggcttggtcggtgacgacgccgccgccgccgccatcaagtctttttgtgattcttccaattgcaggcaggatatcggcatattgattgtgctccactctatggcaatgagaaggaggtatcaattggaactgtgtaagaaggctttggagaacataattgtgtatctggaaactggttgtggaaagacccacataccgtgttgcttatgtatgaaccagttgatactcaaacctcagaagaacgtatgtgtgttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

8.47

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 139
AciI CCGC 4 cut(s) 60, 63, 66, 69
AcyI GRCGYC 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 11, 43, 102, 139
AjnI CCWGG 2 cut(s) 23, 37
Alw21I GWGCWC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 25, 39
BisI GCNGC 4 cut(s) 60, 63, 66, 69
BlsI GCNGC 4 cut(s) 61, 64, 67, 70
Bme1390I CCNGG 2 cut(s) 25, 39
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 25, 39
Bpu10I CCTNAGC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 43, 102, 139
Bse1I ACTGG 2 cut(s) 217, 256
Bse3DI GCAATG 1 cut(s) 150
BseBI CCWGG 2 cut(s) 25, 39
BseDI CCNNGG 1 cut(s) 37
BseLI CCNNNNNNNGG 4 cut(s) 11, 43, 102, 139
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 217, 256
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 4 cut(s) 11, 43, 102, 139
BsmFI GGGAC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 132
BspACI CCGC 4 cut(s) 60, 63, 66, 69
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 2 cut(s) 217, 256
BssECI CCNNGG 1 cut(s) 37
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 25, 39
Bst4CI ACNGT 2 cut(s) 171, 237
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 16, 273
BstMWI GCNNNNNNNGC 2 cut(s) 65, 68
BstNI CCWGG 2 cut(s) 25, 39
BstSCI CCNGG 2 cut(s) 23, 37
Cac8I GCNNGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 21
CseI GACGC 1 cut(s) 65
CviJI RGCY 4 cut(s) 15, 36, 42, 182
CviKI_1 RGCY 4 cut(s) 15, 36, 42, 182
DdeI CTNAG 2 cut(s) 16, 273
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 21
EcoRII CCWGG 2 cut(s) 23, 37
EcoRV GATATC 1 cut(s) 112
FaiI YATR 7 cut(s) 119, 140, 194, 233, 247, 251, 286
FaqI GGGAC 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 60, 63, 66, 69
Fsp4HI GCNGC 4 cut(s) 60, 63, 66, 69
GluI GCNGC 4 cut(s) 60, 63, 66, 69
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 57
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 276, 296
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 15, 144, 172
HpyCH4III ACNGT 2 cut(s) 171, 237
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 68
HpyF3I CTNAG 2 cut(s) 16, 273
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 135
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 50
MboII GAAGA 2 cut(s) 84, 289
MfeI CAATTG 2 cut(s) 97, 161
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 97, 161, 195
MnlI CCTC 2 cut(s) 147, 282
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 25, 39
MunI CAATTG 2 cut(s) 97, 161
MvaI CCWGG 2 cut(s) 25, 39
MwoI GCNNNNNNNGC 2 cut(s) 65, 68
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 89
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 4 cut(s) 61, 64, 67, 70
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 23, 37
PspGI CCWGG 2 cut(s) 23, 37
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 21
PspPPI RGGWCCY 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 197
SatI GCNGC 4 cut(s) 60, 63, 66, 69
Sau96I GGNCC 1 cut(s) 21
ScrFI CCNGG 2 cut(s) 25, 39
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 26, 158, 274, 285
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 3 cut(s) 97, 161, 195
SsiI CCGC 4 cut(s) 60, 63, 66, 69
StyD4I CCNGG 2 cut(s) 23, 37
TaaI ACNGT 2 cut(s) 171, 237
TaiI ACGT 1 cut(s) 285
TasI AATT 3 cut(s) 97, 161, 195
TauI GCSGC 4 cut(s) 62, 65, 68, 71
TfiI GAWTC 1 cut(s) 89
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.