Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

33585770 .. 33587557

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG303500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTGCGATTTGGACTCAGAAATCAATCGTCTTTGGTACATTCATTTTGTGGCAAGGTATCAATTGGAACTGTGTAAGAAAGCTTTGGAGAACATAATTGTGTATCTGGAAACTGGTTGTGGAAAGACCCACATCGCCGTGTTGCTTATGTATGAACCAGTTGATACAAACCTCAGAAGAACGTATGTGTGTTCTGAGTCCTGTAACTCAAGTCACCAGTTACTCACATTTGTAAACAAAAGGGAAAATATTGGATTTTTATATGTTTCAATGCTTGCAGGGAGATCATTGGGGTATATATGGATCAAACTGCCTCCAATGGATTATTGCAATGGAGATAATAATAATACTGTATTTCTTTCTTTCATATTTGAGCATATTATTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

129

Amino Acids

15.05

Weight (kDa)

5.77

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	311
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	270, 386
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AlwI	GGATC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	193
Bse1I	ACTGG	3 cut(s)	118, 158, 217
Bse3DI	GCAATG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	30, 186, 187
BseNI	ACTGG	3 cut(s)	118, 158, 217
Bsp143I	GATC	2 cut(s)	284, 303
BspCNI	CTCAG	3 cut(s)	29, 186, 187
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	3 cut(s)	118, 158, 217
BssMI	GATC	2 cut(s)	284, 303
Bst4CI	ACNGT	2 cut(s)	72, 352
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	3 cut(s)	16, 173, 195
BstKTI	GATC	2 cut(s)	287, 306
BstMBI	GATC	2 cut(s)	284, 303
BtgZI	GCGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	37
CviJI	RGCY	1 cut(s)	83
CviKI_1	RGCY	1 cut(s)	83
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	16, 173, 195
DpnI	GATC	2 cut(s)	286, 305
DpnII	GATC	2 cut(s)	284, 303
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	2 cut(s)	14, 197
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	19, 176, 196
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	72, 352
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	278, 330
HpyF3I	CTNAG	3 cut(s)	16, 173, 195
HpySE526I	ACGT	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	284, 303
LpnPI	CCDG	6 cut(s)	92, 99, 171, 214, 230, 264
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	3 cut(s)	203, 212, 219
MalI	GATC	2 cut(s)	286, 305
MboI	GATC	2 cut(s)	284, 303
MboII	GAAGA	1 cut(s)	189
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 96
MlyI	GAGTC	2 cut(s)	8, 206
MnlI	CCTC	2 cut(s)	182, 324
MslI	CAYNNNNRTG	2 cut(s)	98, 137
MunI	CAATTG	1 cut(s)	62
NdeII	GATC	2 cut(s)	284, 303
NmuCI	GTSAC	1 cut(s)	212
PleI	GAGTC	2 cut(s)	8, 205
PpsI	GAGTC	2 cut(s)	8, 205
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	98, 137
Sau3AI	GATC	2 cut(s)	284, 303
SchI	GAGTC	2 cut(s)	8, 206
SetI	ASST	4 cut(s)	59, 85, 174, 185
SmiMI	CAYNNNNRTG	2 cut(s)	98, 137
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	2 cut(s)	62, 96
SspI	AATATT	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	72, 352
TaiI	ACGT	1 cut(s)	185
TasI	AATT	2 cut(s)	62, 96
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	32, 168, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.