Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Forward (+)

26150459 .. 26153002

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0250900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGCCCCATTTTCTGGAAAGAAAGACAGAGGGAAAGAAGGAATTTGGGGGCAAGGTGTTTCCAAAGACACTGAAACCTCCTCCGGAGATGAGCACTGACGGCGTGGATGAGTTGGTGGATATGGTGAAGGAAGAGAGAGAATTGCTGCACAAGACTCTCGAGGCTCACTCTGCCATTCTATTCAAGGGTTTCAGATTGAAGAGAGCAAAAGAGTTCGGGCGTGTGGTGGAGGCGTTTGGATGGGAAAACATGACTCACTTGTCGGCGGCCCCATGGCTGGTTCTGAGGCATTCGGTGGGAGAGAGAGTTTATGCTCCAAATGCGACTCACAGGCCTGTTGCTCAACCCATCGCCTTTCATCACGAGATGGCTTTGGTGAAGGAAGTTCCTTCAAAGTTATTTTTGTATTGTTTGCAGCCACATCCCCCGAGGGTGGAGAGACATCTATACTGCCTAGCCAGAGCCAATTTGGCCACGGAATATGATCCTAAGGATGCTGGTGGTATCAGTGAGCCATGGAAATGGATCCTAGACACTCAAGATCTTGCTGAAGCTGAGAAGAGAGAAAAAGAAAAGCTTCTGTGCAGTGAGGTGAAATTTATAGAAGATAGAGTCGGAGAGATTGTATTTGGGCCAATGAATCCAATTAGGAGCTATGGTGGAAAGAGGGTTTGGTTCAACACCATTCTTTGCTACGGTCCTAAAGGTTCCGACAACACAAGCTTCACAGATGGTACCAAATTTCCAGAGTCAGCAGTGGAAACCTATAAGAAAGTCTTAGAGGAGAACTGTGTGAACATTAAATGGGAGAAAGGAGATTTTCTGCTAGTAGATAATTTGCTCGCTCAACATGCTAAGCTTCCTAGAAAGCCGCTGCGTCAAATTCTGGTTTCCATTTGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

302

Amino Acids

34.57

Weight (kDa)

8.59

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TauD	PF02668	39 - 142	3.4e-07	Taurine catabolism dioxygenase TauD, TfdA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	262
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	2 cut(s)	4, 737
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	85
AciI	CCGC	2 cut(s)	269, 875
AclWI	GGATC	3 cut(s)	482, 523, 536
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	4 cut(s)	44, 599, 743, 885
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	739
AfiI	CCNNNNNNNGG	3 cut(s)	16, 280, 436
AgsI	TTSAA	4 cut(s)	187, 202, 396, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	5 cut(s)	557, 580, 657, 726, 862
AluI	AGCT	5 cut(s)	557, 580, 657, 726, 862
Alw21I	GWGCWC	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	3 cut(s)	482, 523, 536
Ama87I	CYCGRG	2 cut(s)	161, 430
Aor13HI	TCCGGA	1 cut(s)	85
AoxI	GGCC	4 cut(s)	270, 335, 474, 635
ApeKI	GCWGC	3 cut(s)	148, 418, 877
ApoI	RAATTY	4 cut(s)	44, 599, 743, 885
Asp700I	GAANNNNTTC	1 cut(s)	579
Asp718I	GGTACC	1 cut(s)	737
AspS9I	GGNCC	3 cut(s)	271, 635, 701
AsuHPI	GGTGA	3 cut(s)	139, 391, 607
AvaI	CYCGRG	2 cut(s)	161, 430
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	492
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	528
BanI	GGYRCC	2 cut(s)	4, 737
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	135, 430, 864
BccI	CCATC	4 cut(s)	237, 359, 364, 728
BceAI	ACGGC	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	4 cut(s)	458, 533, 830, 867
BglI	GCCNNNNNGGC	1 cut(s)	473
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	5 cut(s)	149, 270, 419, 875, 878
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	5 cut(s)	150, 271, 420, 876, 879
Bme18I	GGWCC	1 cut(s)	701
BmeT110I	CYCGRG	2 cut(s)	161, 430
BmgT120I	GGNCC	3 cut(s)	271, 635, 701
BmiI	GGNNCC	5 cut(s)	6, 273, 530, 712, 739
BmsI	GCATC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	4 cut(s)	275, 431, 477, 518
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	6 cut(s)	294, 324, 612, 642, 646, 676
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 280, 436
Bse21I	CCTNAGG	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	85
BseDI	CCNNGG	4 cut(s)	275, 431, 477, 518
BseGI	GGATG	4 cut(s)	115, 248, 424, 502
BseLI	CCNNNNNNNGG	3 cut(s)	16, 280, 436
BseMII	CTCAG	2 cut(s)	278, 549
BseRI	GAGGAG	2 cut(s)	72, 800
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	135, 430, 864
BsgI	GTGCAG	2 cut(s)	134, 607
BshFI	GGCC	4 cut(s)	272, 337, 476, 637
BshNI	GGYRCC	2 cut(s)	4, 737
BsiHKAI	GWGCWC	1 cut(s)	98
BsiHKCI	CYCGRG	2 cut(s)	161, 430
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	16, 280, 436
BsmAI	GTCTC	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	272, 337, 476, 637
BsoBI	CYCGRG	2 cut(s)	161, 430
Bsp1286I	GDGCHC	2 cut(s)	9, 98
Bsp13I	TCCGGA	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	487, 528, 544
Bsp1720I	GCTNAGC	1 cut(s)	858
Bsp19I	CCATGG	2 cut(s)	275, 518
BspACI	CCGC	2 cut(s)	269, 875
BspANI	GGCC	4 cut(s)	272, 337, 476, 637
BspCNI	CTCAG	2 cut(s)	279, 550
BspEI	TCCGGA	1 cut(s)	85
BspLI	GGNNCC	5 cut(s)	6, 273, 530, 712, 739
BspPI	GGATC	3 cut(s)	482, 523, 536
BspT107I	GGYRCC	2 cut(s)	4, 737
BssECI	CCNNGG	4 cut(s)	275, 431, 477, 518
BssMI	GATC	3 cut(s)	487, 528, 544
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	275, 518
Bst2BI	CACGAG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	701, 794
Bst6I	CTCTTC	3 cut(s)	129, 197, 557
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	5 cut(s)	287, 492, 558, 781, 858
BstDSI	CCRYGG	3 cut(s)	275, 477, 518
BstF5I	GGATG	4 cut(s)	115, 248, 424, 502
BstKTI	GATC	3 cut(s)	490, 531, 547
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	3 cut(s)	487, 528, 544
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 173, 323, 473, 854
BstNSI	RCATGY	1 cut(s)	857
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	135, 430, 864
BstX2I	RGATCY	2 cut(s)	528, 544
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	2 cut(s)	528, 544
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	4 cut(s)	272, 337, 476, 637
BtgI	CCRYGG	3 cut(s)	275, 477, 518
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	4 cut(s)	115, 248, 424, 502
BtsI	GCAGTG	2 cut(s)	595, 765
BtsIMutI	CAGTG	5 cut(s)	71, 96, 517, 595, 765
Cac8I	GCNNGC	1 cut(s)	846
Cfr13I	GGNCC	3 cut(s)	271, 635, 701
CseI	GACGC	1 cut(s)	869
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	4 cut(s)	253, 276, 519, 854
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	5 cut(s)	287, 492, 558, 781, 858
DpnI	GATC	3 cut(s)	489, 530, 546
DpnII	GATC	3 cut(s)	487, 528, 544
DrdI	GACNNNNNNGTC	1 cut(s)	262
DseDI	GACNNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	129, 197, 557
EarI	CTCTTC	3 cut(s)	129, 197, 557
Eco130I	CCWWGG	2 cut(s)	275, 518
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	2 cut(s)	161, 430
EcoT14I	CCWWGG	2 cut(s)	275, 518
ErhI	CCWWGG	2 cut(s)	275, 518
FaeI	CATG	4 cut(s)	256, 279, 522, 857
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 764, 796
FatI	CATG	4 cut(s)	252, 275, 518, 853
Fnu4HI	GCNGC	5 cut(s)	149, 270, 419, 875, 878
FokI	GGATG	4 cut(s)	122, 255, 411, 509
Fsp4HI	GCNGC	5 cut(s)	149, 270, 419, 875, 878
FspBI	CTAG	4 cut(s)	458, 533, 830, 867
GluI	GCNGC	5 cut(s)	149, 270, 419, 875, 878
HaeIII	GGCC	4 cut(s)	272, 337, 476, 637
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	869
Hin1II	CATG	4 cut(s)	256, 279, 522, 857
HindIII	AAGCTT	3 cut(s)	578, 724, 860
HinfI	GANTC	6 cut(s)	157, 256, 328, 615, 643, 752
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	139, 391, 607
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	4 cut(s)	197, 288, 620, 715
Hpy188III	TCNNGA	6 cut(s)	17, 86, 161, 365, 542, 749
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	4 cut(s)	34, 124, 376, 402
HpyCH4III	ACNGT	2 cut(s)	701, 794
HpyCH4V	TGCA	3 cut(s)	151, 418, 588
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 173, 323, 473, 854
HpyF3I	CTNAG	5 cut(s)	287, 492, 558, 781, 858
Hsp92II	CATG	4 cut(s)	256, 279, 522, 857
Kpn2I	TCCGGA	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	3 cut(s)	487, 528, 544
LmnI	GCTCC	2 cut(s)	322, 654
LpnPI	CCDG	9 cut(s)	2, 99, 266, 319, 351, 475, 486, 762, 875
Lsp1109I	GCAGC	3 cut(s)	135, 430, 864
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	4 cut(s)	458, 533, 830, 867
MalI	GATC	3 cut(s)	489, 530, 546
MboI	GATC	3 cut(s)	487, 528, 544
MboII	GAAGA	4 cut(s)	146, 214, 574, 620
MflI	RGATCY	2 cut(s)	528, 544
MhlI	GDGCHC	2 cut(s)	9, 98
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	8 cut(s)	44, 143, 469, 599, 648, 743, 838, 885
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	5 cut(s)	151, 250, 322, 624, 761
MmeI	TCCRAC	2 cut(s)	598, 738
Mox20I	TGGCCA	1 cut(s)	476
MroI	TCCGGA	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	523
Msp20I	TGGCCA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	877
MspI	CCGG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	5 cut(s)	102, 173, 323, 473, 854
NcoI	CCATGG	2 cut(s)	275, 518
NdeII	GATC	3 cut(s)	487, 528, 544
NlaIII	CATG	4 cut(s)	256, 279, 522, 857
NlaIV	GGNNCC	5 cut(s)	6, 273, 530, 712, 739
NspI	RCATGY	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	337
PctI	GAATGC	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	643
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	5 cut(s)	150, 271, 420, 876, 879
PleI	GAGTC	5 cut(s)	151, 250, 322, 623, 760
PpsI	GAGTC	5 cut(s)	151, 250, 322, 623, 760
PspN4I	GGNNCC	5 cut(s)	6, 273, 530, 712, 739
PspPI	GGNCC	3 cut(s)	271, 635, 701
PsuI	RGATCY	2 cut(s)	528, 544
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
RseI	CAYNNNNRTG	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	5 cut(s)	149, 270, 419, 875, 878
Sau3AI	GATC	3 cut(s)	487, 528, 544
Sau96I	GGNCC	3 cut(s)	271, 635, 701
SchI	GAGTC	5 cut(s)	151, 250, 322, 624, 761
SduI	GDGCHC	2 cut(s)	9, 98
SfaNI	GCATC	1 cut(s)	487
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	701
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	161, 540
SmoI	CTYRAG	2 cut(s)	161, 540
Sse9I	AATT	8 cut(s)	44, 143, 469, 599, 648, 743, 838, 885
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	269, 875
SspMI	CTAG	4 cut(s)	458, 533, 830, 867
StuI	AGGCCT	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	275, 518
TaaI	ACNGT	2 cut(s)	701, 794
TaqI	TCGA	1 cut(s)	162
TasI	AATT	8 cut(s)	44, 143, 469, 599, 648, 743, 838, 885
TauI	GCSGC	2 cut(s)	272, 877
TfiI	GAWTC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	5 cut(s)	78, 103, 517, 595, 765
TseI	GCWGC	3 cut(s)	148, 418, 877
TspDTI	ATGAA	2 cut(s)	350, 656
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	5 cut(s)	78, 103, 517, 595, 765
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	4 cut(s)	44, 599, 743, 885
XceI	RCATGY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XhoI	CTCGAG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	4 cut(s)	458, 533, 830, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.