Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15380612 .. 15380983

Gene Structure 372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGTTCCTCCACCTTGCCATATTTGCAGGGTTTACGCTTTCAGCCGAGTTTATTAATTCGTTTCAAATCCTATCTGTGGTCGTTGGATTGCTTATGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCGGCAACTTGTTGCCAAACCAGTCTTCCTGCAGCACTTGTTCTGTCTAATTCAGTTGTATTCCAAGGTTGCTGTTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTTGTTCCTAAGGGCATTACCATTGGTTATTGCAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

123

Amino Acids

13.5

Weight (kDa)

6.25

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	28 - 115	2.9e-30	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	65, 161
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AluBI	AGCT	4 cut(s)	118, 187, 215, 366
AluI	AGCT	4 cut(s)	118, 187, 215, 366
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	4 cut(s)	184, 212, 251, 363
AseI	ATTAAT	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	196, 224, 263
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	5 cut(s)	185, 213, 222, 252, 364
BlsI	GCNGC	5 cut(s)	186, 214, 223, 253, 365
BmiI	GGNNCC	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	240
Bse21I	CCTNAGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	196, 224, 263
BshFI	GGCC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	327, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 218, 221
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	3 cut(s)	196, 224, 263
BstV2I	GAAGAC	1 cut(s)	236
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	98
BtsIMutI	CAGTG	1 cut(s)	141
CviAII	CATG	4 cut(s)	149, 208, 304, 313
CviJI	RGCY	6 cut(s)	44, 98, 118, 187, 215, 366
CviKI_1	RGCY	6 cut(s)	44, 98, 118, 187, 215, 366
DdeI	CTNAG	2 cut(s)	327, 339
Eco130I	CCWWGG	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	4 cut(s)	152, 211, 307, 316
FaiI	YATR	9 cut(s)	20, 95, 150, 191, 209, 299, 305, 314, 370
FatI	CATG	4 cut(s)	148, 207, 303, 312
Fnu4HI	GCNGC	5 cut(s)	185, 213, 222, 252, 364
Fsp4HI	GCNGC	5 cut(s)	185, 213, 222, 252, 364
GluI	GCNGC	5 cut(s)	185, 213, 222, 252, 364
HaeIII	GGCC	1 cut(s)	98
Hin1II	CATG	4 cut(s)	152, 211, 307, 316
HinfI	GANTC	1 cut(s)	309
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	134, 155
HpyCH4V	TGCA	4 cut(s)	26, 184, 251, 363
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 218, 221
HpyF3I	CTNAG	2 cut(s)	327, 339
Hsp92II	CATG	4 cut(s)	152, 211, 307, 316
LpnPI	CCDG	4 cut(s)	12, 253, 261, 304
Lsp1109I	GCAGC	3 cut(s)	196, 224, 263
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	2 cut(s)	55, 268
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	2 cut(s)	17, 109
MseI	TTAA	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	23, 218, 221
NlaIII	CATG	4 cut(s)	152, 211, 307, 316
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	5 cut(s)	186, 214, 223, 253, 365
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	5 cut(s)	185, 213, 222, 252, 364
SetI	ASST	6 cut(s)	15, 120, 189, 217, 289, 368
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	55, 268
SsiI	CCGC	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	283
TasI	AATT	2 cut(s)	55, 268
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	4 cut(s)	184, 212, 251, 363
TspDTI	ATGAA	2 cut(s)	301, 314
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.