Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15632905 .. 15633473

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGCACGTTCATTAGGCACGTAGTACCTGGCTTTGCCCTCACCCTTCTTGGTTTATGGCACACCGTCAACACTATCAGATCTTATTTTCTCAAAGGCCCTAGTAACTTTAGAGTAAGGTTTTGGTACCCATTGAACTGCCCTTTTCCCAAAATTAAACACCTGGAACTCATTTTCATCTTATCTTTCTCTGTATTTGCAATTATTATGCAAGTTCTAGACTTCCCGTTTCTTAACTTCTCCTTCAAGCTCCATAATTTGGAGCATGCAACCATGTTCCTTCACCTTGCCATATTTGCAGGGTTTACATTTTCAGCTCAGTTTATTTATTTGTTTCAAATCATATCTGGGGTTGTTGGATTGCTTATGGCCTCTGTTTTCTGCCTAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGAGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTTTGCGGCAAGAAAGATATTCATTGGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

168

Amino Acids

19.69

Weight (kDa)

7.93

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	117 - 158	4.3e-11	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	259
AciI	CCGC	1 cut(s)	478
AfaI	GTAC	2 cut(s)	27, 128
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	4 cut(s)	136, 247, 338, 434
AjnI	CCWGG	2 cut(s)	28, 162
AluBI	AGCT	4 cut(s)	250, 317, 391, 460
AluI	AGCT	4 cut(s)	250, 317, 391, 460
AoxI	GGCC	2 cut(s)	97, 369
ApeKI	GCWGC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	34, 275
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	30, 164
BfaI	CTAG	3 cut(s)	102, 218, 386
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	2 cut(s)	458, 479
BlsI	GCNGC	2 cut(s)	459, 480
Bme1390I	CCNGG	2 cut(s)	30, 164
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	30, 164
BsaAI	YACGTR	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	30, 164
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	2 cut(s)	99, 371
BshNI	GGYRCC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	259
BsnI	GGCC	2 cut(s)	99, 371
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	478
BspANI	GGCC	2 cut(s)	99, 371
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	126
BssMI	GATC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	30, 164
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	318
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	2 cut(s)	30, 164
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	28, 162
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	99, 371
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	26, 127
CviAII	CATG	3 cut(s)	266, 274, 422
CviJI	RGCY	8 cut(s)	33, 99, 250, 317, 371, 391, 460, 503
CviKI_1	RGCY	8 cut(s)	33, 99, 250, 317, 371, 391, 460, 503
CviQI	GTAC	2 cut(s)	26, 127
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	28, 162
FaeI	CATG	3 cut(s)	269, 277, 425
FatI	CATG	3 cut(s)	265, 273, 421
Fnu4HI	GCNGC	2 cut(s)	458, 479
Fsp4HI	GCNGC	2 cut(s)	458, 479
FspBI	CTAG	3 cut(s)	102, 218, 386
GluI	GCNGC	2 cut(s)	458, 479
HaeIII	GGCC	2 cut(s)	99, 371
Hin1II	CATG	3 cut(s)	269, 277, 425
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HphI	GGTGA	2 cut(s)	34, 275
Hpy166II	GTNNAC	2 cut(s)	70, 306
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	218, 431
Hpy8I	GTNNAC	2 cut(s)	70, 306
HpyAV	CCTTC	4 cut(s)	56, 253, 290, 407
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	8, 21
HpyCH4V	TGCA	5 cut(s)	200, 211, 269, 299, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	2 cut(s)	8, 21
Hsp92II	CATG	3 cut(s)	269, 277, 425
KpnI	GGTACC	1 cut(s)	130
Kzo9I	GATC	1 cut(s)	80
LguI	GCTCTTC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	255, 262
LpnPI	CCDG	6 cut(s)	15, 42, 149, 176, 285, 333
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	3 cut(s)	102, 218, 386
MaeII	ACGT	2 cut(s)	8, 21
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	153, 201, 256
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	3 cut(s)	50, 382, 493
MseI	TTAA	2 cut(s)	156, 234
MspR9I	CCNGG	2 cut(s)	30, 164
MvaI	CCWGG	2 cut(s)	30, 164
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	269, 277, 425
NlaIV	GGNNCC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	459, 480
Ppu21I	YACGTR	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	28, 162
PspGI	CCWGG	2 cut(s)	28, 162
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	27, 128
RsaNI	GTAC	2 cut(s)	26, 127
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	156, 234
SatI	GCNGC	2 cut(s)	458, 479
Sau3AI	GATC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	2 cut(s)	30, 164
SduI	GDGCHC	1 cut(s)	8
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	153, 201, 256
SsiI	CCGC	1 cut(s)	478
SspMI	CTAG	3 cut(s)	102, 218, 386
StyD4I	CCNGG	2 cut(s)	28, 162
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	11, 24
TasI	AATT	3 cut(s)	153, 201, 256
TauI	GCSGC	1 cut(s)	481
Tru1I	TTAA	2 cut(s)	156, 234
Tru9I	TTAA	2 cut(s)	156, 234
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	166, 483
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	259
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	3 cut(s)	102, 218, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.