Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005472.1

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

108709 .. 111545

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005472.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgttcctccaccttgccatatttgcagggtttacactttcagctgagtttattaattcgtttcgaatcatatctggggtcgttggattgcttacggcctctgttttctgccaagagcttttccttctccatttccactccactgaccatgttggtcttgaagagcattaccattggttattgcagctcatagtgtttgctatgcggcaagttgaatggcctgtagcagagtccccatgccattcccctaggtatcaattggaactgtgtatgaaagctttggaggagaacataattgtctatctggaaactggttgtggaaagacctacatagctgtgttgcctatgtatgaaccagttgatactcaaacctcagaagaacatgtgtgttctgtgtcctggagatcgttgtggtatatatggatcaaattgctcccaatggattattgcaatagagattttgaagcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

156

Amino Acids

18.17

Weight (kDa)

5.1

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	161, 215, 464
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	5 cut(s)	44, 118, 187, 278, 335
AluI	AGCT	5 cut(s)	44, 118, 187, 278, 335
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	96, 218
ApeKI	GCWGC	1 cut(s)	184
AseI	ATTAAT	1 cut(s)	54
AspA2I	CCTAGG	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	64
AvrII	CCTAGG	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	400
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	185, 206
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	186, 207
Bme1390I	CCNGG	1 cut(s)	400
BmrFI	CCNGG	1 cut(s)	400
BpmI	CTGGAG	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	316, 356
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	248
BseMII	CTCAG	2 cut(s)	36, 387
BseNI	ACTGG	2 cut(s)	316, 356
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	2 cut(s)	98, 220
BslFI	GGGAC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	98, 220
Bsp119I	TTCGAA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	404, 423
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	2 cut(s)	98, 220
BspCNI	CTCAG	2 cut(s)	37, 386
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	64
BsrI	ACTGG	2 cut(s)	316, 356
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	2 cut(s)	404, 423
BssT1I	CCWWGG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	45, 373
BstKTI	GATC	2 cut(s)	407, 426
BstMBI	GATC	2 cut(s)	404, 423
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	400
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	98, 220
BtsIMutI	CAGTG	1 cut(s)	141
CviAII	CATG	3 cut(s)	149, 237, 383
CviJI	RGCY	8 cut(s)	44, 98, 118, 187, 220, 278, 335, 467
CviKI_1	RGCY	8 cut(s)	44, 98, 118, 187, 220, 278, 335, 467
DdeI	CTNAG	2 cut(s)	45, 373
DpnI	GATC	2 cut(s)	406, 425
DpnII	GATC	2 cut(s)	404, 423
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	3 cut(s)	152, 240, 386
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	3 cut(s)	148, 236, 382
Fnu4HI	GCNGC	2 cut(s)	185, 206
Fsp4HI	GCNGC	2 cut(s)	185, 206
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	2 cut(s)	185, 206
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	98, 220
Hin1II	CATG	3 cut(s)	152, 240, 386
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	2 cut(s)	66, 230
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	376
Hpy188III	TCNNGA	2 cut(s)	158, 305
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	26, 184, 450
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	2 cut(s)	45, 373
Hsp92II	CATG	3 cut(s)	152, 240, 386
Kzo9I	GATC	2 cut(s)	404, 423
LguI	GCTCTTC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	8 cut(s)	12, 60, 234, 290, 297, 369, 385, 412
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	249
MalI	GATC	2 cut(s)	406, 425
MboI	GATC	2 cut(s)	404, 423
MboII	GAAGA	2 cut(s)	173, 389
MfeI	CAATTG	1 cut(s)	257
MluCI	AATT	4 cut(s)	55, 257, 294, 428
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	17, 109, 277, 382
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	400
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	404, 423
NlaIII	CATG	3 cut(s)	152, 240, 386
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	64
PciI	ACATGT	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	2 cut(s)	186, 207
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	185, 206
Sau3AI	GATC	2 cut(s)	404, 423
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	400
SetI	ASST	9 cut(s)	15, 46, 120, 189, 254, 280, 329, 337, 374
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	335
Sse9I	AATT	4 cut(s)	55, 257, 294, 428
SsiI	CCGC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	64
TasI	AATT	4 cut(s)	55, 257, 294, 428
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	148
TseI	GCWGC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	287, 366
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	54
XceI	RCATGY	1 cut(s)	386
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.