Rh6BG148300

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001745
Physical Location & Seq
Reverse (-)
23811172 .. 23812481
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG148300.1

Sequence Viewer

Length: 360 bp
ATGGAAATGGTCCAGTTGACAACTATAGCTATGCAGAGCAACAATTCCAGCAGGAACCTGGCAGTCCAGCCTGACTTGCTCAGTGACGCCACCGTGGCCGCTGCCATCAAGGCAGGATATCGGCAATTCGGCATATTGATTGTGCTCCACTCTATGGCAATGAGAAGGAGGTATCAATTGGAATTGTGTAAGAAAGCTTTGGAGGAGAACTCAATTGTGTATCTGGAAACTGGTTGTGGAAAGATCCACATAGCCGTGTTGCTTATGGTTATTGTTGTGGTATATATGGATCAAATTGCTCCCAGTGGATTATTGCAGTGGCGAATTGCAGTACTAGAAAGAATGTGGTTATCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

8.68

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 154
AciI CCGC 1 cut(s) 99
AclWI GGATC 2 cut(s) 238, 297
AcoI YGGCCR 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 154
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 2 cut(s) 29, 197
AluI AGCT 2 cut(s) 29, 197
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 2 cut(s) 238, 297
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 59
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 24
BglI GCCNNNNNGGC 2 cut(s) 95, 110
BisI GCNGC 2 cut(s) 99, 102
BlsI GCNGC 2 cut(s) 100, 103
BmcAI AGTACT 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 297
BmuI ACTGGG 1 cut(s) 297
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 3 cut(s) 13, 235, 303
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 94
BseNI ACTGG 3 cut(s) 13, 235, 303
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 154
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 243, 289
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 238, 297
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 3 cut(s) 13, 235, 303
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 243, 289
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 93
BstKTI GATC 2 cut(s) 246, 292
BstMBI GATC 2 cut(s) 243, 289
BstMWI GCNNNNNNNGC 3 cut(s) 76, 95, 110
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 3 cut(s) 88, 310, 323
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 332
CviJI RGCY 5 cut(s) 29, 70, 98, 197, 254
CviKI_1 RGCY 5 cut(s) 29, 70, 98, 197, 254
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 245, 291
DpnII GATC 2 cut(s) 243, 289
EaeI YGGCCR 1 cut(s) 96
Eco32I GATATC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 119
FaiI YATR 9 cut(s) 26, 32, 134, 155, 251, 266, 283, 285, 287
Fnu4HI GCNGC 2 cut(s) 99, 102
Fsp4HI GCNGC 2 cut(s) 99, 102
FspBI CTAG 1 cut(s) 335
GluI GCNGC 2 cut(s) 99, 102
HaeIII GGCC 1 cut(s) 98
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 195
Hpy166II GTNNAC 1 cut(s) 18
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 18
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 3 cut(s) 34, 316, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 95, 110
HpyF3I CTNAG 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 87
Kzo9I GATC 2 cut(s) 243, 289
LmnI GCTCC 2 cut(s) 150, 304
Lsp1109I GCAGC 1 cut(s) 88
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 245, 291
MboI GATC 2 cut(s) 243, 289
MfeI CAATTG 2 cut(s) 176, 213
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 7 cut(s) 43, 125, 176, 182, 213, 294, 324
MnlI CCTC 2 cut(s) 162, 196
MslI CAYNNNNRTG 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 2 cut(s) 176, 213
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 76, 95, 110
NdeII GATC 2 cut(s) 243, 289
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 2 cut(s) 100, 103
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 2 cut(s) 99, 102
Sau3AI GATC 2 cut(s) 243, 289
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 31, 60, 173, 199
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 7 cut(s) 43, 125, 176, 182, 213, 294, 324
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 94
TasI AATT 7 cut(s) 43, 125, 176, 182, 213, 294, 324
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 101
TscAI CASTG 3 cut(s) 88, 310, 323
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 3 cut(s) 88, 310, 323
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 10
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.