Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15251362 .. 15254617

Gene Structure 3256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23326

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGCAGCTTTAGCAGCAACTTGTTGCCGAACCAGTCTTCCAGCAGCACTTGTTCTGTCTATTTCAGTTGTATTTCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTTGTTCCTAAGGGCATTACCATTGGTTATTGCAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

54

Amino Acids

5.82

Weight (kDa)

8.91

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	2 - 46	1.5e-14	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	77
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	2 cut(s)	8, 159
AluI	AGCT	2 cut(s)	8, 159
ApeKI	GCWGC	4 cut(s)	5, 14, 44, 156
AxyI	CCTNAGG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	17, 26, 56
BisI	GCNGC	4 cut(s)	6, 15, 45, 157
BlsI	GCNGC	4 cut(s)	7, 16, 46, 158
BmiI	GGNNCC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	33
Bse21I	CCTNAGG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	17, 26, 56
BspLI	GGNNCC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	120, 132
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 14
BstV1I	GCAGC	3 cut(s)	17, 26, 56
BstV2I	GAAGAC	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	132
CviAII	CATG	2 cut(s)	97, 106
CviJI	RGCY	2 cut(s)	8, 159
CviKI_1	RGCY	2 cut(s)	8, 159
DdeI	CTNAG	2 cut(s)	120, 132
Eco81I	CCTNAGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	100, 109
FaiI	YATR	4 cut(s)	92, 98, 107, 163
FatI	CATG	2 cut(s)	96, 105
Fnu4HI	GCNGC	4 cut(s)	6, 15, 45, 157
Fsp4HI	GCNGC	4 cut(s)	6, 15, 45, 157
GluI	GCNGC	4 cut(s)	6, 15, 45, 157
Hin1II	CATG	2 cut(s)	100, 109
HinfI	GANTC	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 14
HpyF3I	CTNAG	2 cut(s)	120, 132
Hsp92II	CATG	2 cut(s)	100, 109
LpnPI	CCDG	4 cut(s)	46, 54, 70, 97
Lsp1109I	GCAGC	3 cut(s)	17, 26, 56
MboII	GAAGA	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	11, 14
NlaIII	CATG	2 cut(s)	100, 109
NlaIV	GGNNCC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	4 cut(s)	7, 16, 46, 158
PspN4I	GGNNCC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	6, 15, 45, 157
SetI	ASST	3 cut(s)	10, 82, 161
SgeI	CNNG	9 cut(s)	33, 45, 53, 62, 89, 97, 109, 118, 124
TfiI	GAWTC	1 cut(s)	102
TseI	GCWGC	4 cut(s)	5, 14, 44, 156
TspDTI	ATGAA	2 cut(s)	94, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.