RchiOBHm_Chr6g0260561

Family of unknown function (DUF716)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
15531751 .. 15532172
422 bp
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UTR
Exon/CDS
Intron
PRQ23367

Sequence Viewer

Length: 342 bp
ATGTTCCTCCACCTTACCATATTTGCAGGGTTTACGCTTTCGGCCGAGTTTATTAATTCGTTTCAAATCCTATCTGGGGTCGTTGGATTGCTTATGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCAGCAACTTGTTGCCGAACCAGTCTTCCTGCAGCACTTGTTCTGTTTATTTCAGTTGTATTCCAAGCTCATAGTGTTTGCTTTGCGACAAGGTTGGTGCTTCACCATTTGCTTTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.53

Weight (kDa)

6.47

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 26 - 95 6.5e-18 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 65, 161
AloI GAACNNNNNNTCC 2 cut(s) 229, 261
AluBI AGCT 4 cut(s) 118, 187, 215, 287
AluI AGCT 4 cut(s) 118, 187, 215, 287
AoxI GGCC 2 cut(s) 42, 96
ApeKI GCWGC 4 cut(s) 184, 212, 221, 251
AseI ATTAAT 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 196, 224, 233, 263
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 4 cut(s) 185, 213, 222, 252
BlsI GCNGC 4 cut(s) 186, 214, 223, 253
BpiI GAAGAC 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 240
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 240
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 4 cut(s) 196, 224, 233, 263
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 44, 98
BsiEI CGRYCG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 2 cut(s) 44, 98
BspANI GGCC 2 cut(s) 44, 98
BspMAI CTGCAG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 218, 221
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 196, 224, 233, 263
BstV2I GAAGAC 1 cut(s) 236
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 2 cut(s) 44, 98
BtsIMutI CAGTG 1 cut(s) 141
CviAII CATG 2 cut(s) 149, 208
CviJI RGCY 6 cut(s) 44, 98, 118, 187, 215, 287
CviKI_1 RGCY 6 cut(s) 44, 98, 118, 187, 215, 287
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 42
FaeI CATG 2 cut(s) 152, 211
FaiI YATR 7 cut(s) 20, 95, 150, 191, 209, 291, 340
FatI CATG 2 cut(s) 148, 207
Fnu4HI GCNGC 4 cut(s) 185, 213, 222, 252
Fsp4HI GCNGC 4 cut(s) 185, 213, 222, 252
GluI GCNGC 4 cut(s) 185, 213, 222, 252
HaeIII GGCC 2 cut(s) 44, 98
Hin1II CATG 2 cut(s) 152, 211
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 134, 155
HpyCH4V TGCA 3 cut(s) 26, 184, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 221
Hsp92II CATG 2 cut(s) 152, 211
LpnPI CCDG 4 cut(s) 12, 60, 253, 261
Lsp1109I GCAGC 4 cut(s) 196, 224, 233, 263
MboII GAAGA 1 cut(s) 236
MluCI AATT 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 17, 109
MseI TTAA 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 218, 221
NlaIII CATG 2 cut(s) 152, 211
NmeAIII GCCGAG 1 cut(s) 70
PkrI GCNGC 4 cut(s) 186, 214, 223, 253
PshBI ATTAAT 1 cut(s) 54
PstI CTGCAG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 4 cut(s) 185, 213, 222, 252
SetI ASST 6 cut(s) 15, 120, 189, 217, 289, 314
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 55
TasI AATT 1 cut(s) 55
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 148
TseI GCWGC 4 cut(s) 184, 212, 221, 251
TspRI CASTG 1 cut(s) 148
VspI ATTAAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.