RchiOBHm_Chr6g0260331

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
15363048 .. 15364122
1075 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23346

Sequence Viewer

Length: 327 bp
ATGGGCATATTGATTGGGCTCCACTCTATGGCAATGAGGAGGAGGTATCAATTGGAACTGTGTAAGAAAGCTTTGGAGGAGAACATAATTGTGTATCTGGAAACTGGTTGTGGAAAGACCCACATAGCCGTGTTGCCTATGTATGAACCAGTTGATCCTCAAACCTCAGAAGAACATATATGTGCTCTGTGTCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGATTTTGAAGCCTGACATGTTTCTAAAGAAGATGGAGAGAGAAGTTAGAAGAAGAGGAAGAGGAAGAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling

Protein Analysis

108

Amino Acids

12.37

Weight (kDa)

8.25

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 28
AclWI GGATC 2 cut(s) 149, 226
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 187
AlwI GGATC 2 cut(s) 149, 226
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 187
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 109, 149
Bse3DI GCAATG 2 cut(s) 39, 252
BseBI CCWGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 2 cut(s) 39, 252
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 2 cut(s) 109, 149
BseRI GAGGAG 3 cut(s) 52, 55, 92
BsiHKAI GWGCWC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 21, 187
Bsp143I GATC 3 cut(s) 154, 199, 218
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 2 cut(s) 149, 226
BsrDI GCAATG 2 cut(s) 39, 252
BsrI ACTGG 2 cut(s) 109, 149
BssMI GATC 3 cut(s) 154, 199, 218
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 3 cut(s) 298, 304, 310
BstDEI CTNAG 1 cut(s) 166
BstKTI GATC 3 cut(s) 157, 202, 221
BstMBI GATC 3 cut(s) 154, 199, 218
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 193
CviAII CATG 1 cut(s) 268
CviJI RGCY 4 cut(s) 19, 71, 128, 262
CviKI_1 RGCY 4 cut(s) 19, 71, 128, 262
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 156, 201, 220
DpnII GATC 3 cut(s) 154, 199, 218
Eam1104I CTCTTC 3 cut(s) 298, 304, 310
EarI CTCTTC 3 cut(s) 298, 304, 310
Eco24I GRGCYC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 1 cut(s) 271
FatI CATG 1 cut(s) 267
FriOI GRGCYC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 216
Hin1II CATG 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 3 cut(s) 154, 199, 218
LmnI GCTCC 2 cut(s) 24, 233
LpnPI CCDG 6 cut(s) 83, 90, 162, 180, 207, 276
MalI GATC 3 cut(s) 156, 201, 220
MboI GATC 3 cut(s) 154, 199, 218
MboII GAAGA 6 cut(s) 182, 292, 312, 315, 321, 327
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 2 cut(s) 21, 187
MluCI AATT 3 cut(s) 50, 87, 223
MnlI CCTC 9 cut(s) 30, 33, 36, 70, 168, 175, 299, 305, 311
MslI CAYNNNNRTG 3 cut(s) 89, 128, 180
MspR9I CCNGG 1 cut(s) 195
MunI CAATTG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 195
NdeII GATC 3 cut(s) 154, 199, 218
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 20
NspI RCATGY 1 cut(s) 271
PciI ACATGT 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 28
PfoI TCCNGGA 1 cut(s) 193
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 20
RseI CAYNNNNRTG 3 cut(s) 89, 128, 180
Sau3AI GATC 3 cut(s) 154, 199, 218
ScrFI CCNGG 1 cut(s) 195
SduI GDGCHC 2 cut(s) 21, 187
SetI ASST 3 cut(s) 47, 73, 167
SgeI CNNG 8 cut(s) 110, 117, 142, 161, 206, 207, 275, 280
SmiMI CAYNNNNRTG 3 cut(s) 89, 128, 180
Sse9I AATT 3 cut(s) 50, 87, 223
StyD4I CCNGG 1 cut(s) 193
TaaI ACNGT 1 cut(s) 60
TasI AATT 3 cut(s) 50, 87, 223
TspDTI ATGAA 1 cut(s) 159
Van91I CCANNNNNTGG 1 cut(s) 28
XceI RCATGY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.