RchiOBHm_Chr6g0260341

Family of unknown function (DUF716)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
15365963 .. 15366183
221 bp
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UTR
Exon/CDS
Intron
PRQ23347

Sequence Viewer

Length: 159 bp
ATGGTCGTTGGATTGCTTATGGCCTCTGTTTTCTGCCTAGAGCTTTTCCTTCTCCATTCCCACTCCACTGACCATGTTGGTCTTGAAGAGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTTTGTGGCAAGAAATATATTCATTGGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

6.08

Weight (kDa)

4.92

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 3 - 43 1.2e-11 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 2 cut(s) 43, 112
AluI AGCT 2 cut(s) 43, 112
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 121
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 23
BsnI GGCC 1 cut(s) 23
BspANI GGCC 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 66
CviAII CATG 1 cut(s) 74
CviJI RGCY 4 cut(s) 23, 43, 112, 155
CviKI_1 RGCY 4 cut(s) 23, 43, 112, 155
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 20, 75, 116, 142
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 23
Hin1II CATG 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 109
Hsp92II CATG 1 cut(s) 77
LguI GCTCTTC 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 38
MboII GAAGA 1 cut(s) 98
MnlI CCTC 2 cut(s) 34, 145
NlaIII CATG 1 cut(s) 77
PciSI GCTCTTC 1 cut(s) 81
PkrI GCNGC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 81
SatI GCNGC 1 cut(s) 110
SetI ASST 2 cut(s) 45, 114
SgeI CNNG 4 cut(s) 50, 86, 95, 146
SspMI CTAG 1 cut(s) 38
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 135
TspRI CASTG 1 cut(s) 73
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.