RchiOBHm_Chr6g0260351

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001745
Physical Location & Seq
Reverse (-)
15366308 .. 15366526
219 bp
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UTR
Exon/CDS
Intron
PRQ23348

Sequence Viewer

Length: 219 bp
ATGGGCACGTTCATTGGGCACATAGTACCTGGCTTTGCCCTCACCCTTCTTGGTTTATGGCACACTGTCAACACTATCGGATCTTATTTTCTCAAAGGCCCTAGTAACTTTGGAGTAAGGTTTTGGTACCCATTGAACTGCCCTTTTTCCAAAATTAAACACTGGAACTCATTTTCATCTTATCTTTCTCTTTATTTGCAATTATTATGCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

72

Amino Acids

8.28

Weight (kDa)

9.63

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AclWI GGATC 1 cut(s) 88
AfaI GTAC 2 cut(s) 27, 128
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 28
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 97
Asp718I GGTACC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 34
BaeGI GKGCMC 2 cut(s) 8, 21
BanI GGYRCC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 30
BfaI CTAG 2 cut(s) 102, 217
Bme1390I CCNGG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 167
BseSI GKGCMC 2 cut(s) 8, 21
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 126
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 8, 21
Bsp143I GATC 1 cut(s) 80
BspANI GGCC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 128
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 167
BssMI GATC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 67
BstKTI GATC 1 cut(s) 83
BstMBI GATC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSLI GKGCMC 2 cut(s) 8, 21
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 63, 160
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 26, 127
CviJI RGCY 2 cut(s) 33, 99
CviKI_1 RGCY 2 cut(s) 33, 99
CviQI GTAC 2 cut(s) 26, 127
DpnI GATC 1 cut(s) 82
DpnII GATC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 28
FaiI YATR 3 cut(s) 23, 58, 208
FspBI CTAG 2 cut(s) 102, 217
HaeIII GGCC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HphI GGTGA 1 cut(s) 34
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 199, 210
HpySE526I ACGT 1 cut(s) 8
KpnI GGTACC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 80
LpnPI CCDG 3 cut(s) 15, 42, 148
MaeI CTAG 2 cut(s) 102, 217
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 82
MboI GATC 1 cut(s) 80
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 8, 21
MluCI AATT 2 cut(s) 153, 200
MnlI CCTC 1 cut(s) 50
MseI TTAA 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
NdeII GATC 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 2 cut(s) 27, 128
RsaNI GTAC 2 cut(s) 26, 127
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 80
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 8, 21
SetI ASST 3 cut(s) 11, 31, 122
SgeI CNNG 6 cut(s) 19, 41, 42, 62, 114, 175
Sse9I AATT 2 cut(s) 153, 200
SspMI CTAG 2 cut(s) 102, 217
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 11
TasI AATT 2 cut(s) 153, 200
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 70, 167
TspDTI ATGAA 1 cut(s) 165
TspRI CASTG 2 cut(s) 70, 167
XspI CTAG 2 cut(s) 102, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.