Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

16337979 .. 16341453

Gene Structure 3475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG105800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCTCCATAATTTGGAGCATGCAACCATGTTCCTCCACCTTGCCATATTTGCAGGGTTTACGCTTTCAGCCGAGTTTATTAATTCGTTTCAAATCCTATCTGGGGTCGTTGGATTGCTTATGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACAATTGGTTATTGCAGTTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCAGCAACTTTTTGCCAAACCAGTCTTCCTGCAGCACTTGTTCTGTCTATTTCAGTTGTATTCCAAGAGACTGCGGTGCCTGATGCTAATGGAAATGGCCCAGTTGATAACCATAGCTATGCAGAGCAACGATTGCAGCAGGTCATCGAATCTAAGTATATCATGAAGGATCCTTCTGCAGAACCGGTTCATTTGAAAGTGCAGAACCGGTTATACAAGAACACCTGCCTTCATCTGTTGAGGCAGGATATAGGCATATTGATTGTGCTCCACTCTATGGCAATGAGAAGGAGGTATCAATTGGAACTGTGTAAGAAAGCTTTGGAGAACATAATTGTGTATCTGGAAACTGGTTGTGGAAAGACCCACATAGCCGTGTTGCTTATGTATGAACCAGTTGATACTCAAACCTCAGAAGAACGTATGTGTGTTCTGAGTCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGGAGATTGAGTACCATATTATGAGAGTTGCTAGGACTGAAGACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

263

Amino Acids

29.69

Weight (kDa)

5.83

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	35 - 104	2.8e-17	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	2 cut(s)	376, 479
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	2 cut(s)	13, 523
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	3 cut(s)	410, 423, 718
AfaI	GTAC	1 cut(s)	755
AfiI	CCNNNNNNNGG	3 cut(s)	13, 103, 523
AgeI	ACCGGT	2 cut(s)	430, 453
AgsI	TTSAA	3 cut(s)	92, 188, 442
AjnI	CCWGG	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	4 cut(s)	145, 242, 363, 566
AluI	AGCT	4 cut(s)	145, 242, 363, 566
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	3 cut(s)	410, 423, 718
AoxI	GGCC	2 cut(s)	123, 343
ApeKI	GCWGC	4 cut(s)	239, 248, 278, 382
AseI	ATTAAT	1 cut(s)	81
AsiGI	ACCGGT	2 cut(s)	430, 453
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	4 cut(s)	251, 260, 290, 394
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	774
BfmI	CTRYAG	2 cut(s)	276, 423
BfuAI	ACCTGC	2 cut(s)	376, 479
BisI	GCNGC	4 cut(s)	240, 249, 279, 383
BlsI	GCNGC	4 cut(s)	241, 250, 280, 384
Bme1390I	CCNGG	1 cut(s)	687
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	2 cut(s)	324, 417
BmrFI	CCNGG	1 cut(s)	687
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	708
BsaWI	WCCGGW	2 cut(s)	430, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 103, 523
Bse118I	RCCGGY	2 cut(s)	430, 453
Bse1I	ACTGG	4 cut(s)	267, 347, 601, 641
Bse3DI	GCAATG	2 cut(s)	534, 744
BseBI	CCWGG	1 cut(s)	687
BseLI	CCNNNNNNNGG	3 cut(s)	13, 103, 523
BseMI	GCAATG	2 cut(s)	534, 744
BseMII	CTCAG	2 cut(s)	671, 672
BseNI	ACTGG	4 cut(s)	267, 347, 601, 641
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	4 cut(s)	251, 260, 290, 394
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	125, 345
BshNI	GGYRCC	1 cut(s)	322
BshTI	ACCGGT	2 cut(s)	430, 453
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	431, 454
BslI	CCNNNNNNNGG	3 cut(s)	13, 103, 523
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	125, 345
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	415, 691, 710
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	125, 345
BspCNI	CTCAG	2 cut(s)	671, 672
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	2 cut(s)	324, 417
BspMAI	CTGCAG	2 cut(s)	280, 427
BspMI	ACCTGC	2 cut(s)	376, 479
BspPI	GGATC	3 cut(s)	410, 423, 718
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	2 cut(s)	534, 744
BsrFI	RCCGGY	2 cut(s)	430, 453
BsrI	ACTGG	4 cut(s)	267, 347, 601, 641
BssAI	RCCGGY	2 cut(s)	430, 453
BssMI	GATC	3 cut(s)	415, 691, 710
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	555
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	3 cut(s)	399, 658, 680
BstKTI	GATC	3 cut(s)	418, 694, 713
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	3 cut(s)	415, 691, 710
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 245, 248, 379
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	2 cut(s)	276, 423
BstV1I	GCAGC	4 cut(s)	251, 260, 290, 394
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	125, 345
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	2 cut(s)	376, 479
Cac8I	GCNNGC	1 cut(s)	21
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	2 cut(s)	430, 453
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	754
CspAI	ACCGGT	2 cut(s)	430, 453
CviAII	CATG	5 cut(s)	20, 28, 176, 235, 409
CviJI	RGCY	8 cut(s)	71, 125, 145, 242, 345, 363, 566, 620
CviKI_1	RGCY	8 cut(s)	71, 125, 145, 242, 345, 363, 566, 620
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	3 cut(s)	399, 658, 680
DpnI	GATC	3 cut(s)	417, 693, 712
DpnII	GATC	3 cut(s)	415, 691, 710
EcoRII	CCWGG	1 cut(s)	685
FaeI	CATG	5 cut(s)	23, 31, 179, 238, 412
FatI	CATG	5 cut(s)	19, 27, 175, 234, 408
Fnu4HI	GCNGC	4 cut(s)	240, 249, 279, 383
Fsp4HI	GCNGC	4 cut(s)	240, 249, 279, 383
FspBI	CTAG	1 cut(s)	774
GluI	GCNGC	4 cut(s)	240, 249, 279, 383
GsuI	CTGGAG	1 cut(s)	708
HaeIII	GGCC	2 cut(s)	125, 345
HapII	CCGG	2 cut(s)	431, 454
Hin1II	CATG	5 cut(s)	23, 31, 179, 238, 412
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	2 cut(s)	395, 682
HpaII	CCGG	2 cut(s)	431, 454
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	661, 681
Hpy188III	TCNNGA	3 cut(s)	185, 409, 590
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	6 cut(s)	161, 182, 406, 429, 485, 528
HpyCH4III	ACNGT	1 cut(s)	555
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	9 cut(s)	23, 53, 211, 278, 368, 382, 425, 448, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 245, 248, 379
HpyF3I	CTNAG	3 cut(s)	399, 658, 680
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	5 cut(s)	23, 31, 179, 238, 412
Kzo9I	GATC	3 cut(s)	415, 691, 710
LmnI	GCTCC	4 cut(s)	9, 16, 519, 725
Lsp1109I	GCAGC	4 cut(s)	251, 260, 290, 394
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	1 cut(s)	667
MalI	GATC	3 cut(s)	417, 693, 712
MboI	GATC	3 cut(s)	415, 691, 710
MboII	GAAGA	2 cut(s)	263, 674
MfeI	CAATTG	2 cut(s)	199, 545
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	6 cut(s)	10, 82, 199, 545, 579, 715
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	44, 136, 480, 531, 667, 736
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	3 cut(s)	363, 581, 620
MspI	CCGG	2 cut(s)	431, 454
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	2 cut(s)	199, 545
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	4 cut(s)	50, 245, 248, 379
NdeII	GATC	3 cut(s)	415, 691, 710
NlaIII	CATG	5 cut(s)	23, 31, 179, 238, 412
NlaIV	GGNNCC	2 cut(s)	324, 417
NmeAIII	GCCGAG	1 cut(s)	97
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PagI	TCATGA	1 cut(s)	408
PaqCI	CACCTGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	395
PflMI	CCANNNNNTGG	2 cut(s)	13, 523
PfoI	TCCNGGA	1 cut(s)	685
PinAI	ACCGGT	2 cut(s)	430, 453
PkrI	GCNGC	4 cut(s)	241, 250, 280, 384
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PshBI	ATTAAT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	324, 417
PspPI	GGNCC	1 cut(s)	344
PsrI	GAACNNNNNNTAC	2 cut(s)	443, 475
PstI	CTGCAG	2 cut(s)	280, 427
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	3 cut(s)	363, 581, 620
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	240, 249, 279, 383
Sau3AI	GATC	3 cut(s)	415, 691, 710
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	276, 423
SmiMI	CAYNNNNRTG	3 cut(s)	363, 581, 620
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	6 cut(s)	10, 82, 199, 545, 579, 715
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	774
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	555
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	1 cut(s)	393
TasI	AATT	6 cut(s)	10, 82, 199, 545, 579, 715
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	4 cut(s)	239, 248, 278, 382
TspDTI	ATGAA	5 cut(s)	205, 425, 425, 467, 651
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	2 cut(s)	13, 523
VspI	ATTAAT	1 cut(s)	81
XceI	RCATGY	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.