Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15171170 .. 15171556

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTTTCAGCTGAGTTTATTAATTCGTTTCAAATCCTATCTGGGGTCGTTGGATTGCTTACGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTACAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCAGCAACTTGTTGCCAAACCAGTCTTCCTGCAGCAGTTGTTCTGTCTATTTCAGTTGTATTCCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTTGTTCCTAGGGGCATTACAATTGGTTATTGCAGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

112

Amino Acids

12.3

Weight (kDa)

6.14

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	15 - 104	1.8e-32	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	32, 128
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	4 cut(s)	11, 85, 154, 182
AluI	AGCT	4 cut(s)	11, 85, 154, 182
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	3 cut(s)	179, 188, 218
AseI	ATTAAT	1 cut(s)	21
AspA2I	CCTAGG	1 cut(s)	305
AvrII	CCTAGG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	191, 200, 230
BceAI	ACGGC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	3 cut(s)	180, 189, 219
BlnI	CCTAGG	1 cut(s)	305
BlsI	GCNGC	3 cut(s)	181, 190, 220
BmiI	GGNNCC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	250, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	250, 305
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	207
BseXI	GCAGC	3 cut(s)	191, 200, 230
BshFI	GGCC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	250, 305
BssT1I	CCWWGG	2 cut(s)	250, 305
BstDEI	CTNAG	2 cut(s)	12, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 188
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	191, 200, 230
BstV2I	GAAGAC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	108
CviAII	CATG	4 cut(s)	116, 175, 271, 280
CviJI	RGCY	5 cut(s)	11, 65, 85, 154, 182
CviKI_1	RGCY	5 cut(s)	11, 65, 85, 154, 182
DdeI	CTNAG	2 cut(s)	12, 294
Eco130I	CCWWGG	2 cut(s)	250, 305
EcoT14I	CCWWGG	2 cut(s)	250, 305
ErhI	CCWWGG	2 cut(s)	250, 305
FaeI	CATG	4 cut(s)	119, 178, 274, 283
FaiI	YATR	7 cut(s)	117, 158, 176, 266, 272, 281, 337
FatI	CATG	4 cut(s)	115, 174, 270, 279
Fnu4HI	GCNGC	3 cut(s)	180, 189, 219
Fsp4HI	GCNGC	3 cut(s)	180, 189, 219
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	3 cut(s)	180, 189, 219
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	119, 178, 274, 283
HinfI	GANTC	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	101, 122
HpyCH4V	TGCA	2 cut(s)	218, 330
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 188
HpyF3I	CTNAG	2 cut(s)	12, 294
Hsp92II	CATG	4 cut(s)	119, 178, 274, 283
LpnPI	CCDG	5 cut(s)	27, 220, 228, 244, 271
Lsp1109I	GCAGC	3 cut(s)	191, 200, 230
MaeI	CTAG	1 cut(s)	306
MboII	GAAGA	1 cut(s)	203
MfeI	CAATTG	1 cut(s)	318
MluCI	AATT	2 cut(s)	22, 318
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	21
MspA1I	CMGCKG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	2 cut(s)	185, 188
NlaIII	CATG	4 cut(s)	119, 178, 274, 283
NlaIV	GGNNCC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	181, 190, 220
PshBI	ATTAAT	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	3 cut(s)	180, 189, 219
SetI	ASST	5 cut(s)	13, 87, 156, 184, 256
SfcI	CTRYAG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	22, 318
SspMI	CTAG	1 cut(s)	306
StyI	CCWWGG	2 cut(s)	250, 305
TasI	AATT	2 cut(s)	22, 318
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	3 cut(s)	179, 188, 218
TspDTI	ATGAA	3 cut(s)	268, 281, 324
TspRI	CASTG	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	21
XmaJI	CCTAGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.