Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Forward (+)

15256285 .. 15256898

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1072300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCAAGTTATAGACTTCCCTTTTCTTCAATTCTCTTTCAAGCTCCATAACTTGGAGCATGCAACCATGTTCCTCCACCTCATCGTATTTGCAGCCTTTATGCTTTCCTCTGTTTTTTGCCAAGAGCTTTTCCTACTCTATTTCCACTCAGCCGACCATGTTGGGCTTGAAGGGCATTACCACTGGTTGTTGCAGCTCATTGTGTTTGCTTCCGTCATGGCAGCTGTAACAGCAACTTGTTTCCGAACCAATCTTCCTGCAGCACTTGTTCTTTCGATTTCAGTTGTTTTTCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTACGGGTTTCTAGGTTTGCTCCGAAGGGTTGCGCTGTCCATTTTGTTGAGGGTAACGGTGATAGCATGCTTGGAGCGGTAACTTGTGGGACAAGTAAGGCTGATTTTAGGGCACGAGCATTGGCAAACTTGCAATTTAGTTGGATACTTTGTGGGATTTTTGATATTCACAGGATGCACATGCCTGAAATTTGCAGGCAAATGCATTCCAAGGGAGGTGTCAATAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

8.23

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	32 - 162	1.9e-39	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccBSI	CCGCTC	1 cut(s)	401
AciI	CCGC	1 cut(s)	401
AcsI	RAATTY	1 cut(s)	513
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	4 cut(s)	29, 40, 170, 293
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AluBI	AGCT	4 cut(s)	43, 127, 196, 224
AluI	AGCT	4 cut(s)	43, 127, 196, 224
ApeKI	GCWGC	4 cut(s)	92, 193, 221, 260
ApoI	RAATTY	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	359
AsuHPI	GGTGA	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	438
BbvI	GCAGC	4 cut(s)	104, 205, 233, 272
BciVI	GTATCC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	4 cut(s)	93, 194, 222, 261
BlsI	GCNGC	4 cut(s)	94, 195, 223, 262
BmsI	GCATC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	104, 205, 233, 272
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	439
BspACI	CCGC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	534
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	534
Bst2BI	CACGAG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	383
BstC8I	GCNNGC	3 cut(s)	60, 392, 521
BstDEI	CTNAG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 230
BstNSI	RCATGY	3 cut(s)	62, 394, 508
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	104, 205, 233, 272
BsuI	GTATCC	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	3 cut(s)	60, 392, 521
CfoI	GCGC	1 cut(s)	359
CviAII	CATG	8 cut(s)	59, 67, 158, 217, 313, 322, 391, 505
CviJI	RGCY	8 cut(s)	43, 95, 127, 152, 166, 196, 224, 425
CviKI_1	RGCY	8 cut(s)	43, 95, 127, 152, 166, 196, 224, 425
DdeI	CTNAG	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	8 cut(s)	62, 70, 161, 220, 316, 325, 394, 508
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	8 cut(s)	58, 66, 157, 216, 312, 321, 390, 504
Fnu4HI	GCNGC	4 cut(s)	93, 194, 222, 261
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	4 cut(s)	93, 194, 222, 261
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	4 cut(s)	93, 194, 222, 261
HhaI	GCGC	1 cut(s)	359
Hin1II	CATG	8 cut(s)	62, 70, 161, 220, 316, 325, 394, 508
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HinfI	GANTC	1 cut(s)	318
HphI	GGTGA	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	245, 348
HpyAV	CCTTC	2 cut(s)	164, 343
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	9 cut(s)	4, 62, 92, 193, 260, 457, 502, 519, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 230
HpyF3I	CTNAG	1 cut(s)	148
Hsp92II	CATG	8 cut(s)	62, 70, 161, 220, 316, 325, 394, 508
HspAI	GCGC	1 cut(s)	357
LmnI	GCTCC	4 cut(s)	48, 55, 349, 398
LpnPI	CCDG	6 cut(s)	169, 270, 286, 481, 505, 522
Lsp1109I	GCAGC	4 cut(s)	104, 205, 233, 272
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	226, 377, 403
MbiI	CCGCTC	1 cut(s)	401
MboII	GAAGA	2 cut(s)	17, 245
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	3 cut(s)	29, 458, 513
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	5 cut(s)	83, 89, 118, 367, 533
Mph1103I	ATGCAT	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	529
MwoI	GCNNNNNNNGC	2 cut(s)	172, 230
NlaIII	CATG	8 cut(s)	62, 70, 161, 220, 316, 325, 394, 508
NsiI	ATGCAT	1 cut(s)	531
NspI	RCATGY	3 cut(s)	62, 394, 508
PaeI	GCATGC	2 cut(s)	62, 394
PctI	GAATGC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	4 cut(s)	94, 195, 223, 262
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	224
SatI	GCNGC	4 cut(s)	93, 194, 222, 261
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	8 cut(s)	45, 81, 129, 198, 226, 298, 341, 544
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	258
SphI	GCATGC	2 cut(s)	62, 394
Sse9I	AATT	3 cut(s)	29, 458, 513
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	275
TasI	AATT	3 cut(s)	29, 458, 513
TfiI	GAWTC	1 cut(s)	318
TscAI	CASTG	1 cut(s)	188
TseI	GCWGC	4 cut(s)	92, 193, 221, 260
TspDTI	ATGAA	2 cut(s)	310, 323
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	3 cut(s)	62, 394, 508
XspI	CTAG	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.