Rh2DG333400

Belongs to the helicase family. Dicer subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001745
Physical Location & Seq
Reverse (-)
42648091 .. 42648938
848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG333400.1

Sequence Viewer

Length: 369 bp
ATGCCTTCTTTGGGCTTAGGAACTTCGCAGTCCAGCCCTGGCTTGGTCAGTGACGCTGCCGCTGCCATCAAGGATATGGCCATATTGATTGGGCTCCACTCTATGGCAATGAGGATGAGGTATCAATTGGAACTGTGTATGAAAGCTTTGGAGGAGAACATAATTGTCTATATGGAAACTGGTTGTGGAAAGACCTACATAGCTGTGTTGCCTATGTATGAACTAGTTGATACTCAAACCTCAGAAGAACATGTGTGTTCTGTGTCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATAGAGGTAATAATAATAATACTGTATTTCTTTCTTTCATATTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko05206 map05206
Pfam Domains
Protein Families
DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

5.21

Isoelectric Point (pI)

44.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 41 - 86 7.8e-06 DEAD/DEAH box helicase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 11, 43, 103
AflIII ACRYGT 1 cut(s) 250
AhlI ACTAGT 1 cut(s) 223
AjnI CCWGG 2 cut(s) 37, 266
AluBI AGCT 2 cut(s) 146, 203
AluI AGCT 2 cut(s) 146, 203
AlwI GGATC 1 cut(s) 299
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 2 cut(s) 56, 62
BalI TGGCCA 1 cut(s) 80
BanII GRGCYC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 43, 49
BccI CCATC 1 cut(s) 74
BciT130I CCWGG 2 cut(s) 39, 268
BcuI ACTAGT 1 cut(s) 223
BfaI CTAG 1 cut(s) 224
BisI GCNGC 3 cut(s) 57, 60, 63
BlsI GCNGC 3 cut(s) 58, 61, 64
Bme1390I CCNGG 2 cut(s) 39, 268
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 39, 268
BpmI CTGGAG 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 43, 103
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 39, 268
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 3 cut(s) 11, 43, 103
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 43, 49
BshFI GGCC 1 cut(s) 80
BslI CCNNNNNNNGG 3 cut(s) 11, 43, 103
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 272, 291
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 299
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 272, 291
Bst2UI CCWGG 2 cut(s) 39, 268
Bst4CI ACNGT 2 cut(s) 135, 343
BstDEI CTNAG 2 cut(s) 16, 241
BstF5I GGATG 1 cut(s) 120
BstKTI GATC 2 cut(s) 275, 294
BstMBI GATC 2 cut(s) 272, 291
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 39, 268
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 37, 266
BstV1I GCAGC 2 cut(s) 43, 49
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 55
CseI GACGC 1 cut(s) 62
CviAII CATG 1 cut(s) 251
CviJI RGCY 7 cut(s) 15, 36, 42, 80, 94, 146, 203
CviKI_1 RGCY 7 cut(s) 15, 36, 42, 80, 94, 146, 203
DdeI CTNAG 2 cut(s) 16, 241
DpnI GATC 2 cut(s) 274, 293
DpnII GATC 2 cut(s) 272, 291
EaeI YGGCCR 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 37, 266
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 254
FatI CATG 1 cut(s) 250
Fnu4HI GCNGC 3 cut(s) 57, 60, 63
FokI GGATG 1 cut(s) 127
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 3 cut(s) 57, 60, 63
FspBI CTAG 1 cut(s) 224
GluI GCNGC 3 cut(s) 57, 60, 63
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 1 cut(s) 80
HgaI GACGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 144
Hpy188I TCNGA 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 15
HpyCH4III ACNGT 2 cut(s) 135, 343
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 2 cut(s) 16, 241
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 272, 291
LmnI GCTCC 2 cut(s) 99, 306
LpnPI CCDG 6 cut(s) 24, 46, 51, 165, 253, 280
Lsp1109I GCAGC 2 cut(s) 43, 49
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 274, 293
MboI GATC 2 cut(s) 272, 291
MboII GAAGA 1 cut(s) 257
MfeI CAATTG 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 3 cut(s) 125, 162, 296
MluNI TGGCCA 1 cut(s) 80
MnlI CCTC 5 cut(s) 105, 111, 145, 250, 317
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 39, 268
MunI CAATTG 1 cut(s) 125
MvaI CCWGG 2 cut(s) 39, 268
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 2 cut(s) 272, 291
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 1 cut(s) 254
PciI ACATGT 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 266
PkrI GCNGC 3 cut(s) 58, 61, 64
PscI ACATGT 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 37, 266
PspGI CCWGG 2 cut(s) 37, 266
PspN4I GGNNCC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 203
SatI GCNGC 3 cut(s) 57, 60, 63
Sau3AI GATC 2 cut(s) 272, 291
ScrFI CCNGG 2 cut(s) 39, 268
SduI GDGCHC 1 cut(s) 96
SetI ASST 6 cut(s) 122, 148, 197, 205, 242, 328
SmiMI CAYNNNNRTG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 223
Sse9I AATT 3 cut(s) 125, 162, 296
SsiI CCGC 1 cut(s) 60
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 37, 266
TaaI ACNGT 2 cut(s) 135, 343
TasI AATT 3 cut(s) 125, 162, 296
TauI GCSGC 1 cut(s) 62
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 56, 62
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 155, 234, 346
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 103
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 73
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.