Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15163908 .. 15166776

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 171 bp

ATGTATGAACCAGTTGATGCTCAAACCTCAGAAGAACGTATGTGTGTTCTGAGTCCTAGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGATTTTGAACCTCGATATGTTTTTAAAGACGATGGAGAGAGAGGTTAGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0003674 GO:0003824 GO:0004467 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006082 GO:0006629 GO:0006631 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009653 GO:0009791 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010143 GO:0010311 GO:0012505 GO:0015645 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0022622 GO:0030054 GO:0031957 GO:0032501 GO:0032502 GO:0032787 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0090696 GO:0090697 GO:0090698 GO:0098542 GO:0099402 GO:1901576 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

56

Amino Acids

6.67

Weight (kDa)

5.25

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	121
AlwI	GGATC	1 cut(s)	88
BccI	CCATC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	114
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	41, 42
BseNI	ACTGG	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	61, 80
BspCNI	CTCAG	2 cut(s)	41, 42
BspPI	GGATC	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	61, 80
BstDEI	CTNAG	2 cut(s)	28, 50
BstKTI	GATC	2 cut(s)	64, 83
BstMBI	GATC	2 cut(s)	61, 80
DdeI	CTNAG	2 cut(s)	28, 50
DpnI	GATC	2 cut(s)	63, 82
DpnII	GATC	2 cut(s)	61, 80
DraI	TTTAAA	1 cut(s)	138
FaiI	YATR	6 cut(s)	6, 41, 74, 76, 78, 131
FspBI	CTAG	1 cut(s)	57
HinfI	GANTC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	31, 51
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	28, 50
HpySE526I	ACGT	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	61, 80
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	1 cut(s)	24
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	37
MalI	GATC	2 cut(s)	63, 82
MboI	GATC	2 cut(s)	61, 80
MboII	GAAGA	1 cut(s)	44
MluCI	AATT	1 cut(s)	85
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	3 cut(s)	37, 134, 148
MseI	TTAA	1 cut(s)	137
NdeII	GATC	2 cut(s)	61, 80
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	137
Sau3AI	GATC	2 cut(s)	61, 80
SchI	GAGTC	1 cut(s)	61
SetI	ASST	4 cut(s)	29, 40, 126, 159
SfaNI	GCATC	1 cut(s)	7
SgeI	CNNG	3 cut(s)	23, 69, 137
Sse9I	AATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	21
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.