Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15601543 .. 15602007

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGGCACGTTCATTGGGCACGTAGTACCTGGCTTTGCCCTCACCCTTCTTGGTTTATGGCATACAGTCAACACTATCAGATCTTATTTTCTCAAAGGCACTAGTAACTTTAGAGTGAGGTTTTGGTACCCATTGAACTACCCTTTTTCCAAAATTAAACACCTGGGACTCATTTTCATCTTATCTTTCTCTGGATTTGCAGTTATCGTGCAAGTTCTAGACTTCCCTGTTCTTAACTTCTCCTTCAAGCTCCATAATTTGGAGCATGCAACCATGTTCCTCCACCTTGCATATTTGCAGGGTTTTCGCTTTCAGCTGGGTTTATTAATTCGTTTCAAATCCTACCTGGGGTCGTTGGATTGCTTACGGCCTCTGTTTTCTGCCAAGATCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTATCATTTGTTATTGCAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

154

Amino Acids

17.63

Weight (kDa)

9.97

Isoelectric Point (pI)

20.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	27, 128
AfiI	CCNNNNNNNGG	2 cut(s)	259, 348
AgsI	TTSAA	4 cut(s)	136, 247, 337, 433
AhlI	ACTAGT	1 cut(s)	101
AjnI	CCWGG	3 cut(s)	28, 162, 345
AluBI	AGCT	3 cut(s)	250, 316, 459
AluI	AGCT	3 cut(s)	250, 316, 459
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	456
AseI	ATTAAT	1 cut(s)	326
Asp718I	GGTACC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	34
BaeGI	GKGCMC	2 cut(s)	8, 21
BanI	GGYRCC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	3 cut(s)	30, 164, 347
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	2 cut(s)	102, 218
BglII	AGATCT	2 cut(s)	80, 387
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	3 cut(s)	30, 164, 347
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	30, 164, 347
BsaAI	YACGTR	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	163, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 348
BseBI	CCWGG	3 cut(s)	30, 164, 347
BseDI	CCNNGG	2 cut(s)	163, 346
BseLI	CCNNNNNNNGG	2 cut(s)	259, 348
BseSI	GKGCMC	2 cut(s)	8, 21
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	259, 348
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	8, 21
Bsp143I	GATC	2 cut(s)	80, 387
BspANI	GGCC	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	163, 346
BssMI	GATC	2 cut(s)	80, 387
Bst2UI	CCWGG	3 cut(s)	30, 164, 347
Bst4CI	ACNGT	1 cut(s)	67
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	267
BstKTI	GATC	2 cut(s)	83, 390
BstMBI	GATC	2 cut(s)	80, 387
BstNI	CCWGG	3 cut(s)	30, 164, 347
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	28, 162, 345
BstSLI	GKGCMC	2 cut(s)	8, 21
BstX2I	RGATCY	2 cut(s)	80, 387
BstYI	RGATCY	2 cut(s)	80, 387
BsuRI	GGCC	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	267
Csp6I	GTAC	2 cut(s)	26, 127
CviAII	CATG	3 cut(s)	266, 274, 421
CviJI	RGCY	5 cut(s)	33, 250, 316, 370, 459
CviKI_1	RGCY	5 cut(s)	33, 250, 316, 370, 459
CviQI	GTAC	2 cut(s)	26, 127
DpnI	GATC	2 cut(s)	82, 389
DpnII	GATC	2 cut(s)	80, 387
EcoRII	CCWGG	3 cut(s)	28, 162, 345
FaeI	CATG	3 cut(s)	269, 277, 424
FaiI	YATR	8 cut(s)	58, 63, 255, 267, 275, 292, 422, 463
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	3 cut(s)	265, 273, 420
Fnu4HI	GCNGC	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	2 cut(s)	102, 218
GluI	GCNGC	1 cut(s)	457
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	269, 277, 424
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	168
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	192, 218, 430
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	4 cut(s)	56, 253, 406, 427
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	8, 21
HpyCH4V	TGCA	6 cut(s)	200, 211, 269, 290, 298, 456
HpySE526I	ACGT	2 cut(s)	8, 21
Hsp92II	CATG	3 cut(s)	269, 277, 424
KpnI	GGTACC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	80, 387
LmnI	GCTCC	2 cut(s)	255, 262
MaeI	CTAG	2 cut(s)	102, 218
MaeII	ACGT	2 cut(s)	8, 21
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	82, 389
MboI	GATC	2 cut(s)	80, 387
MflI	RGATCY	2 cut(s)	80, 387
MhlI	GDGCHC	2 cut(s)	8, 21
MluCI	AATT	3 cut(s)	153, 256, 327
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	4 cut(s)	50, 111, 290, 381
MseI	TTAA	3 cut(s)	156, 234, 326
MspA1I	CMGCKG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	30, 164, 347
MvaI	CCWGG	3 cut(s)	30, 164, 347
NdeII	GATC	2 cut(s)	80, 387
NlaIII	CATG	3 cut(s)	269, 277, 424
NlaIV	GGNNCC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Ppu21I	YACGTR	1 cut(s)	22
PshBI	ATTAAT	1 cut(s)	326
Psp6I	CCWGG	3 cut(s)	28, 162, 345
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	3 cut(s)	28, 162, 345
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	80, 387
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	2 cut(s)	27, 128
RsaNI	GTAC	2 cut(s)	26, 127
SaqAI	TTAA	3 cut(s)	156, 234, 326
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	2 cut(s)	80, 387
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	3 cut(s)	30, 164, 347
SduI	GDGCHC	2 cut(s)	8, 21
SpeI	ACTAGT	1 cut(s)	101
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	3 cut(s)	153, 256, 327
SspMI	CTAG	2 cut(s)	102, 218
StyD4I	CCNGG	3 cut(s)	28, 162, 345
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	2 cut(s)	11, 24
TasI	AATT	3 cut(s)	153, 256, 327
Tru1I	TTAA	3 cut(s)	156, 234, 326
Tru9I	TTAA	3 cut(s)	156, 234, 326
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	1 cut(s)	456
TspDTI	ATGAA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	420
Van91I	CCANNNNNTGG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	2 cut(s)	102, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.