Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Forward (+)

8070967 .. 8071854

Gene Structure 888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGGGACCTTTGTCGGACACATAGTACCTGGCCTTGCTCTTGCCCTCCTTGGTTTATGGCACACCGTCAACACTATCATATCCTATTTTCTCAAAGGCCCTAGTAACTTTACAATAAGGTTTTGGTACCCATTAAATTCCCCGGTTTCGAAACTCAAACACTTGGAGCTCATTTTCATCTTATCTTTCTCTGTATGGGCAATTCTCATGCAAGTTATAGACTTCCCTTTATTTCAATTCTCTTTCAAGCTCCACAACTTGGAGCATGCAACCATGTTCCTCCACCTCGTCATATTTGCAGCCTTTACGCTTTGTGCTGAGTTGATTCATTCACTTCACATCCTATCCGGGGTCGTTGGAATACTAGTAGCCTCTGTTTTCTGCCAAGAGCTTTTCCTACTTCATTTCCACTCTGCCGACCATGTTGGGCTTGAAGGACATTACCACTGGTTGCTGCAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTCTGGCAGCAACTTGTTTCCGAACCAGTCTTCCTGCAGCACTTGTTCTTTCGATTTCAGTTGTTTTTCAGGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAGGTTTGTTCCGAAGGGTTGCATTGTCCACTTTGTTGAGGGTACCGGTGATAGCATGCTTGGAGCGGTAAATTGTGAGACAAGTGAGGCTGATTTTAGGGCGCGAGCATTGGCGAACTTGCAATTTAGTTGGATACTTTCTGGAATTTTGATATTCACAGGATGCACATGCCTGAAATTTGCAGGCAAATGCATTCCAAGGGAGCTGTCAATAGAGTATGAGCAACTCCAGAGTAGAGGAGCAGATATCCCTGTAGCCATGAATGATTTCAAGGAAGCATATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

296

Amino Acids

32.96

Weight (kDa)

6.52

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	117 - 257	6.4e-46	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	126, 641
AccB1I	GGYRCC	2 cut(s)	126, 641
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	665
AccII	CGCG	1 cut(s)	703
AciI	CCGC	1 cut(s)	665
AcsI	RAATTY	3 cut(s)	136, 744, 776
AfaI	GTAC	3 cut(s)	27, 128, 643
AfiI	CCNNNNNNNGG	2 cut(s)	259, 349
AgeI	ACCGGT	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	236, 247, 434, 871
AhlI	ACTAGT	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	28
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	6 cut(s)	169, 250, 391, 460, 488, 805
AluI	AGCT	6 cut(s)	169, 250, 391, 460, 488, 805
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	671
AoxI	GGCC	2 cut(s)	31, 97
ApeKI	GCWGC	6 cut(s)	299, 454, 457, 485, 494, 524
ApoI	RAATTY	3 cut(s)	136, 744, 776
AsiGI	ACCGGT	1 cut(s)	644
Asp700I	GAANNNNTTC	1 cut(s)	866
Asp718I	GGTACC	2 cut(s)	126, 641
AspA2I	CCTAGG	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	6, 98
AsuC2I	CCSGG	2 cut(s)	143, 349
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	6
AvrII	CCTAGG	1 cut(s)	599
BanI	GGYRCC	2 cut(s)	126, 641
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	6 cut(s)	311, 441, 469, 497, 506, 536
BciT130I	CCWGG	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	143, 349
BcoDI	GTCTC	1 cut(s)	671
BcuI	ACTAGT	1 cut(s)	364
BfaI	CTAG	3 cut(s)	102, 365, 600
BfmI	CTRYAG	3 cut(s)	455, 522, 852
BfuI	GTATCC	1 cut(s)	726
BisI	GCNGC	6 cut(s)	300, 455, 458, 486, 495, 525
BlnI	CCTAGG	1 cut(s)	599
BlsI	GCNGC	6 cut(s)	301, 456, 459, 487, 496, 526
Bme1390I	CCNGG	3 cut(s)	30, 143, 349
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	6, 98
BmiI	GGNNCC	4 cut(s)	7, 128, 597, 643
BmrFI	CCNGG	3 cut(s)	30, 143, 349
BmsI	GCATC	1 cut(s)	752
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	812
Bpu14I	TTCGAA	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	143, 349
BsaJI	CCNNGG	5 cut(s)	49, 141, 348, 599, 797
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 349
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	2 cut(s)	452, 513
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	5 cut(s)	49, 141, 348, 599, 797
BseGI	GGATG	2 cut(s)	339, 767
BseLI	CCNNNNNNNGG	2 cut(s)	259, 349
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	452, 513
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	6 cut(s)	311, 441, 469, 497, 506, 536
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	33, 99
BshNI	GGYRCC	2 cut(s)	126, 641
BshTI	ACCGGT	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	3 cut(s)	143, 348, 645
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	259, 349
BsmAI	GTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	792
BsnI	GGCC	2 cut(s)	33, 99
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	2 cut(s)	33, 99
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	703
BspLI	GGNNCC	4 cut(s)	7, 128, 597, 643
BspMAI	CTGCAG	2 cut(s)	459, 526
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	2 cut(s)	126, 641
BsrBI	CCGCTC	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	2 cut(s)	452, 513
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	5 cut(s)	49, 141, 348, 599, 797
BssT1I	CCWWGG	3 cut(s)	49, 599, 797
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	4 cut(s)	267, 656, 705, 784
BstDEI	CTNAG	2 cut(s)	318, 885
BstF5I	GGATG	2 cut(s)	339, 767
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	703
BstMAI	GTCTC	1 cut(s)	671
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 494
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	3 cut(s)	269, 658, 771
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	28, 141, 347
BstSFI	CTRYAG	3 cut(s)	455, 522, 852
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	6 cut(s)	311, 441, 469, 497, 506, 536
BstV2I	GAAGAC	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	33, 99
BtsCI	GGATG	2 cut(s)	339, 767
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	267, 656, 705, 784
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	2 cut(s)	6, 98
Csp6I	GTAC	3 cut(s)	26, 127, 642
CspAI	ACCGGT	1 cut(s)	644
CviQI	GTAC	3 cut(s)	26, 127, 642
DdeI	CTNAG	2 cut(s)	318, 885
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	3 cut(s)	49, 599, 797
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	2 cut(s)	6, 98
EcoRII	CCWGG	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	3 cut(s)	49, 599, 797
EcoT22I	ATGCAT	1 cut(s)	794
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	3 cut(s)	49, 599, 797
FaqI	GGGAC	1 cut(s)	19
Fnu4HI	GCNGC	6 cut(s)	300, 455, 458, 486, 495, 525
FokI	GGATG	2 cut(s)	326, 774
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	6 cut(s)	300, 455, 458, 486, 495, 525
FspBI	CTAG	3 cut(s)	102, 365, 600
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	6 cut(s)	300, 455, 458, 486, 495, 525
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	2 cut(s)	33, 99
HapII	CCGG	3 cut(s)	143, 348, 645
HhaI	GCGC	1 cut(s)	703
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	325, 582
HpaII	CCGG	3 cut(s)	143, 348, 645
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	70, 628
Hpy188I	TCNGA	3 cut(s)	17, 509, 612
Hpy188III	TCNNGA	2 cut(s)	741, 829
Hpy8I	GTNNAC	2 cut(s)	70, 628
HpyAV	CCTTC	2 cut(s)	428, 607
HpyCH4III	ACNGT	1 cut(s)	67
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 494
HpyF3I	CTNAG	2 cut(s)	318, 885
HspAI	GCGC	1 cut(s)	701
KpnI	GGTACC	2 cut(s)	130, 645
LmnI	GCTCC	6 cut(s)	166, 255, 262, 662, 802, 839
Lsp1109I	GCAGC	6 cut(s)	311, 441, 469, 497, 506, 536
LweI	GCATC	1 cut(s)	752
MaeI	CTAG	3 cut(s)	102, 365, 600
MaeIII	GTNAC	1 cut(s)	104
MbiI	CCGCTC	1 cut(s)	665
MboII	GAAGA	1 cut(s)	509
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	7 cut(s)	136, 201, 236, 670, 722, 744, 776
MmeI	TCCRAC	2 cut(s)	337, 710
MnlI	CCTC	7 cut(s)	56, 290, 296, 382, 631, 679, 830
Mph1103I	ATGCAT	1 cut(s)	794
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	1 cut(s)	134
MspI	CCGG	3 cut(s)	143, 348, 645
MspR9I	CCNGG	3 cut(s)	30, 143, 349
Mva1269I	GAATGC	1 cut(s)	792
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	491, 494
NciI	CCSGG	2 cut(s)	143, 349
NlaIV	GGNNCC	4 cut(s)	7, 128, 597, 643
NsiI	ATGCAT	1 cut(s)	794
NspI	RCATGY	3 cut(s)	269, 658, 771
NspV	TTCGAA	1 cut(s)	149
PaeI	GCATGC	2 cut(s)	269, 658
PctI	GAATGC	1 cut(s)	792
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	2 cut(s)	325, 582
PflMI	CCANNNNNTGG	1 cut(s)	259
PinAI	ACCGGT	1 cut(s)	644
PkrI	GCNGC	6 cut(s)	301, 456, 459, 487, 496, 526
PpuMI	RGGWCCY	1 cut(s)	6
PshAI	GACNNNNGTC	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	4 cut(s)	7, 128, 597, 643
PspPI	GGNCC	2 cut(s)	6, 98
PspPPI	RGGWCCY	1 cut(s)	6
PstI	CTGCAG	2 cut(s)	459, 526
RsaI	GTAC	3 cut(s)	27, 128, 643
RsaNI	GTAC	3 cut(s)	26, 127, 642
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	6 cut(s)	300, 455, 458, 486, 495, 525
Sau96I	GGNCC	2 cut(s)	6, 98
ScrFI	CCNGG	3 cut(s)	30, 143, 349
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	752
SfcI	CTRYAG	3 cut(s)	455, 522, 852
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	1 cut(s)	6
SpeI	ACTAGT	1 cut(s)	364
SphI	GCATGC	2 cut(s)	269, 658
Sse9I	AATT	7 cut(s)	136, 201, 236, 670, 722, 744, 776
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	3 cut(s)	102, 365, 600
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	28, 141, 347
StyI	CCWWGG	3 cut(s)	49, 599, 797
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	149, 539
TasI	AATT	7 cut(s)	136, 201, 236, 670, 722, 744, 776
TfiI	GAWTC	2 cut(s)	325, 582
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	452
TseI	GCWGC	6 cut(s)	299, 454, 457, 485, 494, 524
TspDTI	ATGAA	6 cut(s)	166, 317, 392, 574, 587, 875
TspRI	CASTG	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	6
XapI	RAATTY	3 cut(s)	136, 744, 776
XceI	RCATGY	3 cut(s)	269, 658, 771
XmaJI	CCTAGG	1 cut(s)	599
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	3 cut(s)	102, 365, 600
Zsp2I	ATGCAT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.