Rh6AG108600

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001745
Physical Location & Seq
Reverse (-)
15810639 .. 15811049
411 bp
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UTR
Exon/CDS
Intron
Rh6AG108600.1

Sequence Viewer

Length: 411 bp
ATGGCAGCTTTAGCAGCAACTTGTTGCCAAACCAGCCTTCCTGCAGCACTTGTTCTGTCTATTTCAGTTGTATTCCAAGGTTGTTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTTGTTCCGAAGGGCTGTGTTGTCAGTCTCATCGAGGGTAGCAGTGATAACATGCTTGGATCATCAGTTGCTTGTAGATCAAGTGAGTCAGAATTTAGGGCAAGGGCGTTGGCCAACTTGCAATTTAGTTGGATACTTTCTGGGATTTTGATATTCACAGCATGTACATGCCTGAAGTTTGCTGGCAAATGCATTCCAAGAGTATCAATAGAGTATGAGCAACTCCATACTAGCAGAGGAGCAGATGTCCCTATAGTCATAAATGATTTCAAGGAAGCTCATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

136

Amino Acids

14.76

Weight (kDa)

7.54

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF716 PF04819 2 - 98 2.5e-27 Family of unknown function (DUF716)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 190
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 289
AgsI TTSAA 1 cut(s) 394
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 8, 401
AluI AGCT 2 cut(s) 8, 401
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 190
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 5, 14, 44
ApoI RAATTY 1 cut(s) 215
BalI TGGCCA 1 cut(s) 236
BbvI GCAGC 3 cut(s) 17, 26, 56
BciVI GTATCC 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 2 cut(s) 42, 375
BfuI GTATCC 1 cut(s) 249
BisI GCNGC 3 cut(s) 6, 15, 45
BlsI GCNGC 3 cut(s) 7, 16, 46
BmiI GGNNCC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 3 cut(s) 17, 26, 56
BshFI GGCC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 315
BsnI GGCC 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 182, 200
BspANI GGCC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 2 cut(s) 182, 200
BssT1I CCWWGG 1 cut(s) 76
BstAUI TGTACA 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 2 cut(s) 120, 408
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 2 cut(s) 185, 203
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 182, 200
BstMWI GCNNNNNNNGC 3 cut(s) 11, 14, 33
BstNSI RCATGY 3 cut(s) 178, 288, 294
BstSFI CTRYAG 2 cut(s) 42, 375
BstV1I GCAGC 3 cut(s) 17, 26, 56
BsuI GTATCC 1 cut(s) 249
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 288
CviAII CATG 5 cut(s) 97, 106, 175, 285, 291
CviJI RGCY 5 cut(s) 8, 36, 138, 236, 401
CviKI_1 RGCY 5 cut(s) 8, 36, 138, 236, 401
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 120, 408
DpnI GATC 2 cut(s) 184, 202
DpnII GATC 2 cut(s) 182, 200
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 100, 109, 178, 288, 294
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 96, 105, 174, 284, 290
Fnu4HI GCNGC 3 cut(s) 6, 15, 45
FokI GGATG 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 6, 15, 45
FspBI CTAG 1 cut(s) 354
GluI GCNGC 3 cut(s) 6, 15, 45
HaeIII GGCC 1 cut(s) 236
Hin1II CATG 5 cut(s) 100, 109, 178, 288, 294
HinfI GANTC 2 cut(s) 102, 209
Hpy188I TCNGA 2 cut(s) 132, 214
HpyAV CCTTC 2 cut(s) 47, 127
HpyCH4V TGCA 3 cut(s) 44, 244, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 14, 33
HpyF3I CTNAG 2 cut(s) 120, 408
Hsp92II CATG 5 cut(s) 100, 109, 178, 288, 294
Kzo9I GATC 2 cut(s) 182, 200
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 6 cut(s) 46, 54, 97, 249, 291, 308
Lsp1109I GCAGC 3 cut(s) 17, 26, 56
MaeI CTAG 1 cut(s) 354
MalI GATC 2 cut(s) 184, 202
MboI GATC 2 cut(s) 182, 200
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 215, 245
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 2 cut(s) 151, 353
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 317
MscI TGGCCA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 289
Msp20I TGGCCA 1 cut(s) 236
Mva1269I GAATGC 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 11, 14, 33
NdeII GATC 2 cut(s) 182, 200
NlaIII CATG 5 cut(s) 100, 109, 178, 288, 294
NlaIV GGNNCC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 3 cut(s) 178, 288, 294
PctI GAATGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 3 cut(s) 7, 16, 46
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 117
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 289
SatI GCNGC 3 cut(s) 6, 15, 45
Sau3AI GATC 2 cut(s) 182, 200
SchI GAGTC 1 cut(s) 218
SetI ASST 3 cut(s) 10, 82, 403
SfcI CTRYAG 2 cut(s) 42, 375
SmiMI CAYNNNNRTG 1 cut(s) 289
Sse9I AATT 2 cut(s) 215, 245
SspMI CTAG 1 cut(s) 354
StyI CCWWGG 1 cut(s) 76
TaqI TCGA 1 cut(s) 156
TasI AATT 2 cut(s) 215, 245
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 1 cut(s) 102
TscAI CASTG 1 cut(s) 172
TseI GCWGC 3 cut(s) 5, 14, 44
TspDTI ATGAA 2 cut(s) 94, 107
TspRI CASTG 1 cut(s) 172
XapI RAATTY 1 cut(s) 215
XceI RCATGY 3 cut(s) 178, 288, 294
XspI CTAG 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.