Rroxscaffold_6G00414150

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
36452167 .. 36453797
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414150.1

Sequence Viewer

Length: 261 bp
ATGGTCTTCAGACAAGACTGCCGGAGGAAGATGACTCCATCAGGCCTAGCTATATGGCCCAATCTATACGGCCCACCTGATCTCAGGTATCAATTGGAACTGTGTAAGAAAGCTTTGGAGGAGAACATAATCGTGTATCTGGAAACTGGTTGTGGAAAAACCCACATAGCCGTTTTGCTTATGCATGAACTGCACCTGTTGATCTTGAAACCTCAGAACATACATGTGTTTCTTGCACCTACATTTCTGATGGTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002252 GO:0002376 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006351 GO:0006353 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009798 GO:0009888 GO:0009892 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010050 GO:0010073 GO:0010074 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010492 GO:0010599 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0018130 GO:0019222 GO:0019438 GO:0019827 GO:0022414 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048507 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0097659 GO:0098542 GO:0098586 GO:0098727 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1990904
KEGG Pathways
Metabolic & Signaling

Protein Analysis

86

Amino Acids

9.9

Weight (kDa)

8.54

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 223
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 50, 113
AluI AGCT 2 cut(s) 50, 113
AoxI GGCC 3 cut(s) 43, 56, 70
AspS9I GGNCC 2 cut(s) 57, 71
BccI CCATC 2 cut(s) 46, 244
BceAI ACGGC 2 cut(s) 85, 155
BfaI CTAG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 57, 71
Bse1I ACTGG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 97, 227
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 3 cut(s) 45, 58, 72
BsiSI CCGG 1 cut(s) 22
BsnI GGCC 3 cut(s) 45, 58, 72
Bsp143I GATC 2 cut(s) 79, 201
BspANI GGCC 3 cut(s) 45, 58, 72
BspCNI CTCAG 2 cut(s) 96, 226
BsrI ACTGG 1 cut(s) 151
BssMI GATC 2 cut(s) 79, 201
Bst4CI ACNGT 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 83, 213
BstKTI GATC 2 cut(s) 82, 204
BstMBI GATC 2 cut(s) 79, 201
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 227
BsuRI GGCC 3 cut(s) 45, 58, 72
Cfr13I GGNCC 2 cut(s) 57, 71
CviAII CATG 2 cut(s) 185, 224
CviJI RGCY 6 cut(s) 45, 50, 58, 72, 113, 170
CviKI_1 RGCY 6 cut(s) 45, 50, 58, 72, 113, 170
DdeI CTNAG 2 cut(s) 83, 213
DpnI GATC 2 cut(s) 81, 203
DpnII GATC 2 cut(s) 79, 201
Eco147I AGGCCT 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 186
FaeI CATG 2 cut(s) 188, 227
FaiI YATR 9 cut(s) 53, 55, 67, 128, 167, 182, 186, 221, 225
FatI CATG 2 cut(s) 184, 223
FspBI CTAG 1 cut(s) 47
HaeIII GGCC 3 cut(s) 45, 58, 72
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 188, 227
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 34
HpaII CCGG 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 11, 216, 249
Hpy188III TCNNGA 2 cut(s) 140, 205
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 184, 193, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 83, 213
Hsp92II CATG 2 cut(s) 188, 227
Kzo9I GATC 2 cut(s) 79, 201
LpnPI CCDG 7 cut(s) 27, 35, 70, 90, 125, 132, 209
MaeI CTAG 1 cut(s) 47
MalI GATC 2 cut(s) 81, 203
MboI GATC 2 cut(s) 79, 201
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 1 cut(s) 92
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 3 cut(s) 18, 112, 222
Mph1103I ATGCAT 1 cut(s) 186
MslI CAYNNNNRTG 2 cut(s) 131, 224
MspI CCGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 2 cut(s) 79, 201
NlaIII CATG 2 cut(s) 188, 227
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 1 cut(s) 227
PceI AGGCCT 1 cut(s) 45
PciI ACATGT 1 cut(s) 223
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 223
PspPI GGNCC 2 cut(s) 57, 71
RseI CAYNNNNRTG 2 cut(s) 131, 224
Sau3AI GATC 2 cut(s) 79, 201
Sau96I GGNCC 2 cut(s) 57, 71
SchI GAGTC 1 cut(s) 28
SetI ASST 7 cut(s) 52, 79, 89, 115, 198, 214, 241
SmiMI CAYNNNNRTG 2 cut(s) 131, 224
Sse9I AATT 1 cut(s) 92
SseBI AGGCCT 1 cut(s) 45
SspMI CTAG 1 cut(s) 47
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 1 cut(s) 102
TasI AATT 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 201
XceI RCATGY 1 cut(s) 227
XspI CTAG 1 cut(s) 47
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.