Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

15696750 .. 15697076

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCCTCTATTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTGCAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCAGCAACTTGTTGCCAAACCAGTCTTCTAGCAGCACTTGTTCTGTCTATTTCAGTTGTATTCCAAGGTTGCTGGTTTATGAACATGGGATTCATTGATAAGATCAATTATAATTCATTCCTAAATCTCACTGTGTTGGTCCATTATCTTATATTAGCTTTACCTCATGTGCTGGACACGTTTTGGTTCAAGCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

108

Amino Acids

12.33

Weight (kDa)

6.0

Isoelectric Point (pI)

25.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	2 - 74	2.8e-24	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	68, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	4 cut(s)	25, 94, 122, 284
AluI	AGCT	4 cut(s)	25, 94, 122, 284
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	91, 119, 128, 158
AspS9I	GGNCC	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	4 cut(s)	103, 131, 140, 170
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	4 cut(s)	92, 120, 129, 159
BlsI	GCNGC	4 cut(s)	93, 121, 130, 160
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	103, 131, 140, 170
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	259
BstKTI	GATC	1 cut(s)	231
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 128
BstV1I	GCAGC	4 cut(s)	103, 131, 140, 170
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	48, 255
Cfr13I	GGNCC	1 cut(s)	265
CviAII	CATG	5 cut(s)	56, 115, 211, 293, 320
CviJI	RGCY	5 cut(s)	5, 25, 94, 122, 284
CviKI_1	RGCY	5 cut(s)	5, 25, 94, 122, 284
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	5 cut(s)	59, 118, 214, 296, 323
FaiI	YATR	9 cut(s)	57, 98, 116, 206, 212, 237, 278, 294, 321
FatI	CATG	5 cut(s)	55, 114, 210, 292, 319
Fnu4HI	GCNGC	4 cut(s)	92, 120, 129, 159
Fsp4HI	GCNGC	4 cut(s)	92, 120, 129, 159
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	4 cut(s)	92, 120, 129, 159
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	59, 118, 214, 296, 323
HinfI	GANTC	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	41, 62
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 128
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	5 cut(s)	59, 118, 214, 296, 323
Kzo9I	GATC	1 cut(s)	228
LpnPI	CCDG	3 cut(s)	160, 184, 284
Lsp1109I	GCAGC	4 cut(s)	103, 131, 140, 170
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	305
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	1 cut(s)	143
MluCI	AATT	2 cut(s)	232, 238
MnlI	CCTC	2 cut(s)	16, 300
MwoI	GCNNNNNNNGC	2 cut(s)	125, 128
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	5 cut(s)	59, 118, 214, 296, 323
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	4 cut(s)	93, 121, 130, 160
PsiI	TTATAA	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	265
SatI	GCNGC	4 cut(s)	92, 120, 129, 159
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	1 cut(s)	265
SetI	ASST	7 cut(s)	27, 96, 124, 196, 286, 292, 308
SinI	GGWCC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	232, 238
SspMI	CTAG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	308
TasI	AATT	2 cut(s)	232, 238
TfiI	GAWTC	1 cut(s)	216
TscAI	CASTG	2 cut(s)	55, 262
TseI	GCWGC	4 cut(s)	91, 119, 128, 158
TspDTI	ATGAA	3 cut(s)	208, 221, 231
TspRI	CASTG	2 cut(s)	55, 262
VpaK11BI	GGWCC	1 cut(s)	265
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.