Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

79033177 .. 79037068

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0592200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCAAGTACTAGTGCTCCTGCTCTGTCTTTGTCAAAACTGGATTTTCCATTTGTGTCCTCTCAAAGAAGCATGAGGATAGCTCCACTTTCACTCACTTTCAGCAAAGGAAACCTCCATCAATTTCAGATGCCTGGTCGCATTTCTAAGTTTAATGGGTCGAAATCAAGTGGGTTTGTCTTATTTTCTTCCTTAAATGGTCAAATTGAAGCTAACAATGCTCCTGAGGTCCAAGTTCAAAGCAGTTTTTGGAACTGGAAGGGTTATTCTATCCGCTATCAACATGCTGGCAACAGTGGCCCGGCTTTAGTATTAGTTCATGGGTTTGGAGCAAACAGTGACCACTGGAGAAAAAATATTCCAGTTCTAGCAAGAACACATAGGGTGTACTCTATTGATCTCATTGGTTATGGGTACTCTGACAAACCAAATCCTCGTCAATTTGGTGAAAGTCCCTTTTACACATTTGATACATGGGCCACTCAGATAAATGAATTTTGTGTTGATGTTATCAAGGATGAAGCATTCTTCATATGCAACTCTATTGGAGGTCTTGTTGGTCTTCAGGCAGCATTTATGGAGCCACAGATATGCAAGGGTCTAATGCTTATAAATATTTCTCTTCGTATGCTTCATATTAAAAAGCAGCCTTGGTATGGGAAACCATTGATAAAATCATTTCAGAACTTACTGAGAAATACTGATGTTGGCAAATACTTTTTCAAAACTGTTGCGACACCAGAGTCTGTGAGGAATATCCTTCGCCAGTGCTACCATGATACCTCCCAAGTGACAGATGAACTAGTTGAAAAAATCCTTCTTCCAGGACTTGAGCCTGGTGCCGTAGACGTGTTTTTGGAGTTCATTTGTTATTCAGATGGCCCTCTACCTGAGGAACTATTACCTAAAGTGAAGTGTCCTGTTTTGATAGCATGGGGTGACAAGGATCCATGGGAACCTATTGAACTTGGACGTGCCTATGGGAATTTTGAATCTGTAGAAGACTTTGTTGTTCTTCCTAATGTTGGCCACTGCCCTCAGGATGAAGCACCTGATCTTGTAAATCCACTGGTCGAGTCATTTGTGGCACGCCATGCTGCACTCTCATCCAGTATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

373

Amino Acids

41.61

Weight (kDa)

6.32

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	101 - 351	1.2e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	102 - 317	8e-08	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	103 - 355	4.2e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AasI	GACNNNNNNGTC	1 cut(s)	742
AccB1I	GGYRCC	1 cut(s)	839
AccI	GTMKAC	1 cut(s)	846
AciI	CCGC	1 cut(s)	274
AclWI	GGATC	2 cut(s)	941, 954
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	2 cut(s)	494, 985
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	3 cut(s)	10, 389, 416
AfiI	CCNNNNNNNGG	2 cut(s)	656, 1025
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	6 cut(s)	209, 239, 724, 809, 965, 992
AhlI	ACTAGT	2 cut(s)	11, 802
AjiI	CACGTC	2 cut(s)	850, 974
AjnI	CCWGG	3 cut(s)	133, 823, 835
AluBI	AGCT	2 cut(s)	83, 212
AluI	AGCT	2 cut(s)	83, 212
Alw21I	GWGCWC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	941, 954
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	4 cut(s)	298, 477, 880, 1027
ApeKI	GCWGC	3 cut(s)	569, 646, 1097
ApoI	RAATTY	2 cut(s)	494, 985
AspS9I	GGNCC	4 cut(s)	229, 299, 477, 881
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	458, 950
AvaII	GGWCC	1 cut(s)	229
AxyI	CCTNAGG	3 cut(s)	225, 891, 1038
BalI	TGGCCA	1 cut(s)	1029
BamHI	GGATCC	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	554, 1008
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	581, 658, 1084
BccI	CCATC	2 cut(s)	126, 872
BceAI	ACGGC	1 cut(s)	827
BciT130I	CCWGG	3 cut(s)	135, 825, 837
BcnI	CCSGG	1 cut(s)	302
BcuI	ACTAGT	2 cut(s)	11, 802
BfaI	CTAG	3 cut(s)	12, 368, 803
BfmI	CTRYAG	1 cut(s)	996
BisI	GCNGC	3 cut(s)	570, 647, 1098
BlsI	GCNGC	3 cut(s)	571, 648, 1099
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	4 cut(s)	135, 302, 825, 837
Bme18I	GGWCC	1 cut(s)	229
BmgBI	CACGTC	2 cut(s)	850, 974
BmgT120I	GGNCC	4 cut(s)	229, 299, 477, 881
BmiI	GGNNCC	4 cut(s)	582, 841, 948, 957
BmrFI	CCNGG	4 cut(s)	135, 302, 825, 837
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	554, 1008
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	650, 950
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 1025
Bse1I	ACTGG	7 cut(s)	45, 260, 350, 362, 766, 1074, 1110
Bse21I	CCTNAGG	3 cut(s)	225, 891, 1038
BseBI	CCWGG	3 cut(s)	135, 825, 837
BseDI	CCNNGG	2 cut(s)	650, 950
BseGI	GGATG	3 cut(s)	523, 1048, 1106
BseLI	CCNNNNNNNGG	2 cut(s)	656, 1025
BseMII	CTCAG	5 cut(s)	216, 497, 683, 882, 1052
BseNI	ACTGG	7 cut(s)	45, 260, 350, 362, 766, 1074, 1110
BseXI	GCAGC	3 cut(s)	581, 658, 1084
BsgI	GTGCAG	1 cut(s)	1083
BshFI	GGCC	4 cut(s)	300, 479, 882, 1029
BshNI	GGYRCC	1 cut(s)	839
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	656, 1025
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	524
BsnI	GGCC	4 cut(s)	300, 479, 882, 1029
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	3 cut(s)	397, 946, 1054
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	1 cut(s)	274
BspANI	GGCC	4 cut(s)	300, 479, 882, 1029
BspCNI	CTCAG	5 cut(s)	217, 496, 684, 883, 1051
BspLI	GGNNCC	4 cut(s)	582, 841, 948, 957
BspPI	GGATC	2 cut(s)	941, 954
BspT107I	GGYRCC	1 cut(s)	839
BsrI	ACTGG	7 cut(s)	45, 260, 350, 362, 766, 1074, 1110
BssECI	CCNNGG	2 cut(s)	650, 950
BssMI	GATC	3 cut(s)	397, 946, 1054
BssT1I	CCWWGG	2 cut(s)	650, 950
Bst2UI	CCWGG	3 cut(s)	135, 825, 837
Bst4CI	ACNGT	3 cut(s)	296, 338, 730
Bst6I	CTCTTC	1 cut(s)	627
BstAPI	GCANNNNNTGC	1 cut(s)	1094
BstC8I	GCNNGC	2 cut(s)	289, 1090
BstDEI	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	3 cut(s)	523, 1048, 1106
BstKTI	GATC	3 cut(s)	400, 949, 1057
BstMBI	GATC	3 cut(s)	397, 946, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
BstNI	CCWGG	3 cut(s)	135, 825, 837
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	4 cut(s)	133, 300, 823, 835
BstSFI	CTRYAG	1 cut(s)	996
BstV1I	GCAGC	3 cut(s)	581, 658, 1084
BstV2I	GAAGAC	2 cut(s)	554, 1008
BstX2I	RGATCY	1 cut(s)	946
BstYI	RGATCY	1 cut(s)	946
Bsu36I	CCTNAGG	3 cut(s)	225, 891, 1038
BsuRI	GGCC	4 cut(s)	300, 479, 882, 1029
BtgI	CCRYGG	1 cut(s)	950
BtrI	CACGTC	2 cut(s)	850, 974
BtsCI	GGATG	3 cut(s)	523, 1048, 1106
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	6 cut(s)	301, 343, 343, 773, 1030, 1067
Cac8I	GCNNGC	2 cut(s)	289, 1090
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	4 cut(s)	229, 299, 477, 881
Csp6I	GTAC	3 cut(s)	9, 388, 415
CviAII	CATG	8 cut(s)	73, 284, 320, 474, 776, 933, 951, 1094
CviQI	GTAC	3 cut(s)	9, 388, 415
DdeI	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
DpnI	GATC	3 cut(s)	399, 948, 1056
DpnII	GATC	3 cut(s)	397, 946, 1054
DrdI	GACNNNNNNGTC	1 cut(s)	742
DseDI	GACNNNNNNGTC	1 cut(s)	742
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	650, 950
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	548
Eco81I	CCTNAGG	3 cut(s)	225, 891, 1038
EcoRII	CCWGG	3 cut(s)	133, 823, 835
EcoT14I	CCWWGG	2 cut(s)	650, 950
ErhI	CCWWGG	2 cut(s)	650, 950
FaeI	CATG	8 cut(s)	76, 287, 323, 477, 779, 936, 954, 1097
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	8 cut(s)	72, 283, 319, 473, 775, 932, 950, 1093
FauNDI	CATATG	1 cut(s)	533
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	3 cut(s)	570, 647, 1098
FokI	GGATG	3 cut(s)	530, 1055, 1093
Fsp4HI	GCNGC	3 cut(s)	570, 647, 1098
FspBI	CTAG	3 cut(s)	12, 368, 803
GluI	GCNGC	3 cut(s)	570, 647, 1098
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	300, 479, 882, 1029
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	8 cut(s)	76, 287, 323, 477, 779, 936, 954, 1097
HinfI	GANTC	3 cut(s)	743, 992, 1076
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	458, 950
Hpy166II	GTNNAC	2 cut(s)	388, 847
Hpy188I	TCNGA	5 cut(s)	129, 421, 486, 684, 877
Hpy188III	TCNNGA	2 cut(s)	224, 1040
Hpy8I	GTNNAC	2 cut(s)	388, 847
HpyAV	CCTTC	3 cut(s)	253, 770, 827
HpyCH4III	ACNGT	3 cut(s)	296, 338, 730
HpyCH4IV	ACGT	2 cut(s)	849, 973
HpyCH4V	TGCA	3 cut(s)	537, 594, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
HpyF3I	CTNAG	6 cut(s)	147, 225, 483, 692, 891, 1038
HpySE526I	ACGT	2 cut(s)	849, 973
Hsp92II	CATG	8 cut(s)	76, 287, 323, 477, 779, 936, 954, 1097
Kzo9I	GATC	3 cut(s)	397, 946, 1054
LmnI	GCTCC	5 cut(s)	22, 88, 226, 329, 580
Lsp1109I	GCAGC	3 cut(s)	581, 658, 1084
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	12, 368, 803
MaeII	ACGT	2 cut(s)	849, 973
MaeIII	GTNAC	3 cut(s)	338, 790, 938
MalI	GATC	3 cut(s)	399, 948, 1056
MboI	GATC	3 cut(s)	397, 946, 1054
MboII	GAAGA	7 cut(s)	180, 520, 554, 614, 812, 1007, 1013
MflI	RGATCY	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	19
MlsI	TGGCCA	1 cut(s)	1029
MluCI	AATT	5 cut(s)	122, 204, 440, 494, 985
MluNI	TGGCCA	1 cut(s)	1029
MlyI	GAGTC	2 cut(s)	752, 1085
Mox20I	TGGCCA	1 cut(s)	1029
MscI	TGGCCA	1 cut(s)	1029
MseI	TTAA	3 cut(s)	153, 194, 639
MslI	CAYNNNNRTG	1 cut(s)	589
Msp20I	TGGCCA	1 cut(s)	1029
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	4 cut(s)	135, 302, 825, 837
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	3 cut(s)	135, 825, 837
MwoI	GCNNNNNNNGC	3 cut(s)	218, 297, 1094
NciI	CCSGG	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	950
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	3 cut(s)	397, 946, 1054
NlaIII	CATG	8 cut(s)	76, 287, 323, 477, 779, 936, 954, 1097
NlaIV	GGNNCC	4 cut(s)	582, 841, 948, 957
NmuCI	GTSAC	3 cut(s)	338, 790, 938
NspI	RCATGY	1 cut(s)	287
PctI	GAATGC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	992
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	571, 648, 1099
PleI	GAGTC	2 cut(s)	751, 1084
PpsI	GAGTC	2 cut(s)	751, 1084
PsiI	TTATAA	1 cut(s)	611
Psp6I	CCWGG	3 cut(s)	133, 823, 835
PspGI	CCWGG	3 cut(s)	133, 823, 835
PspN4I	GGNNCC	4 cut(s)	582, 841, 948, 957
PspPI	GGNCC	4 cut(s)	229, 299, 477, 881
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	946
RsaI	GTAC	3 cut(s)	10, 389, 416
RsaNI	GTAC	3 cut(s)	9, 388, 415
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	3 cut(s)	153, 194, 639
SatI	GCNGC	3 cut(s)	570, 647, 1098
Sau3AI	GATC	3 cut(s)	397, 946, 1054
Sau96I	GGNCC	4 cut(s)	229, 299, 477, 881
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	2 cut(s)	752, 1085
ScrFI	CCNGG	4 cut(s)	135, 302, 825, 837
SduI	GDGCHC	1 cut(s)	19
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	996
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	2 cut(s)	11, 802
Sse9I	AATT	5 cut(s)	122, 204, 440, 494, 985
SsiI	CCGC	1 cut(s)	274
SspI	AATATT	2 cut(s)	358, 616
SspMI	CTAG	3 cut(s)	12, 368, 803
StyD4I	CCNGG	4 cut(s)	133, 300, 823, 835
StyI	CCWWGG	2 cut(s)	650, 950
TaaI	ACNGT	3 cut(s)	296, 338, 730
TaiI	ACGT	2 cut(s)	852, 976
TaqI	TCGA	2 cut(s)	161, 1074
TasI	AATT	5 cut(s)	122, 204, 440, 494, 985
TatI	WGTACW	2 cut(s)	8, 387
TfiI	GAWTC	1 cut(s)	992
Tru1I	TTAA	3 cut(s)	153, 194, 639
Tru9I	TTAA	3 cut(s)	153, 194, 639
TscAI	CASTG	6 cut(s)	301, 343, 350, 773, 1037, 1074
TseFI	GTSAC	3 cut(s)	338, 790, 938
TseI	GCWGC	3 cut(s)	569, 646, 1097
Tsp45I	GTSAC	3 cut(s)	338, 790, 938
TspDTI	ATGAA	9 cut(s)	308, 507, 520, 534, 623, 813, 853, 1059, 1107
TspRI	CASTG	6 cut(s)	301, 343, 350, 773, 1037, 1074
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	494, 985
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	846
XspI	CTAG	3 cut(s)	12, 368, 803
ZrmI	AGTACT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.