Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Forward (+)

53997896 .. 53999422

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAAGTTCTAGACTTCCCTTTTCTTAACTTCTCCTTCAAGCTCCATAATTTGGAGCATGCAACCATGTTCCTCCACCTTGCCATATTTGCAGGGTTTATGCTTTCAGCTGAGTTTATTAATTCGTTTCAAATCCTAGCTGGGGTCGTTGGATTGCTTACGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTACAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTATAGCAGCAACTTGTTGCCAAACCAGTCTTCCTGCAGCACTTGTTCTGTCCATTTCAGTTGTATTCCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTGGTTCCGAAGGGCTGTGTTGTCAGTCTCATCGAGGGTAGCAGTGATAACATGCTTGGATCATCAGTTACTTGTAGATCAAGCGAGTCAGAATTTAGGGCAAGGGCATTGGCCAACTTGCAATTTAGTTGGATACTTTCTGGGATTTTGATATTCACAGCATGTACATGCCTGAAGTTTGCTGGCAAATGCATTCCAAGAGTATCAATAGAGTATGAGCAACTCCATACTAGCAGAGGAGCAGATGTCCCTATAGTCATAAATGATTTCAAGGAAGCTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

228

Amino Acids

25.11

Weight (kDa)

6.17

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	48 - 189	2.6e-45	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	52
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	52, 142
AgsI	TTSAA	4 cut(s)	40, 131, 227, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	7 cut(s)	43, 110, 140, 184, 253, 281, 674
AluI	AGCT	7 cut(s)	43, 110, 140, 184, 253, 281, 674
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	2 cut(s)	162, 507
ApeKI	GCWGC	3 cut(s)	278, 287, 317
ApoI	RAATTY	1 cut(s)	488
AseI	ATTAAT	1 cut(s)	120
BalI	TGGCCA	1 cut(s)	509
BbsI	GAAGAC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	290, 299, 329
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	3 cut(s)	11, 137, 627
BfmI	CTRYAG	3 cut(s)	282, 315, 648
BfuI	GTATCC	1 cut(s)	522
BisI	GCNGC	3 cut(s)	279, 288, 318
BlsI	GCNGC	3 cut(s)	280, 289, 319
BmiI	GGNNCC	2 cut(s)	390, 402
BpiI	GAAGAC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 142
Bse1I	ACTGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	2 cut(s)	52, 142
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	3 cut(s)	290, 299, 329
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	2 cut(s)	164, 509
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	2 cut(s)	52, 142
BsmAI	GTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	164, 509
Bsp1407I	TGTACA	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	455, 473
BspANI	GGCC	2 cut(s)	164, 509
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	390, 402
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	2 cut(s)	455, 473
BssT1I	CCWWGG	1 cut(s)	349
BstAUI	TGTACA	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	60, 580
BstDEI	CTNAG	3 cut(s)	111, 393, 681
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	2 cut(s)	458, 476
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	455, 473
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 284, 287
BstNSI	RCATGY	4 cut(s)	62, 451, 561, 567
BstSFI	CTRYAG	3 cut(s)	282, 315, 648
BstV1I	GCAGC	3 cut(s)	290, 299, 329
BstV2I	GAAGAC	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	164, 509
BtsCI	GGATG	1 cut(s)	676
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	207, 445
Cac8I	GCNNGC	2 cut(s)	60, 580
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	9 cut(s)	59, 67, 215, 274, 370, 379, 448, 558, 564
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	3 cut(s)	111, 393, 681
DpnI	GATC	2 cut(s)	457, 475
DpnII	GATC	2 cut(s)	455, 473
EaeI	YGGCCR	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	349
EcoT22I	ATGCAT	1 cut(s)	590
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	9 cut(s)	62, 70, 218, 277, 373, 382, 451, 561, 567
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	9 cut(s)	58, 66, 214, 273, 369, 378, 447, 557, 563
Fnu4HI	GCNGC	3 cut(s)	279, 288, 318
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	3 cut(s)	279, 288, 318
FspBI	CTAG	3 cut(s)	11, 137, 627
GluI	GCNGC	3 cut(s)	279, 288, 318
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	164, 509
Hin1II	CATG	9 cut(s)	62, 70, 218, 277, 373, 382, 451, 561, 567
HinfI	GANTC	2 cut(s)	375, 482
Hpy188I	TCNGA	2 cut(s)	405, 487
Hpy188III	TCNNGA	2 cut(s)	11, 224
HpyAV	CCTTC	4 cut(s)	46, 200, 221, 400
HpyCH4V	TGCA	6 cut(s)	4, 62, 92, 317, 517, 588
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 284, 287
HpyF3I	CTNAG	3 cut(s)	111, 393, 681
Hsp92II	CATG	9 cut(s)	62, 70, 218, 277, 373, 382, 451, 561, 567
Kzo9I	GATC	2 cut(s)	455, 473
LmnI	GCTCC	3 cut(s)	48, 55, 635
LpnPI	CCDG	9 cut(s)	78, 126, 319, 327, 343, 370, 522, 564, 581
Lsp1109I	GCAGC	3 cut(s)	290, 299, 329
MaeI	CTAG	3 cut(s)	11, 137, 627
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	457, 475
MboI	GATC	2 cut(s)	455, 473
MboII	GAAGA	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	4 cut(s)	49, 121, 488, 518
MluNI	TGGCCA	1 cut(s)	509
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	130, 506
MnlI	CCTC	4 cut(s)	83, 175, 424, 626
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	2 cut(s)	27, 120
MslI	CAYNNNNRTG	1 cut(s)	562
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	89, 284, 287
NdeII	GATC	2 cut(s)	455, 473
NlaIII	CATG	9 cut(s)	62, 70, 218, 277, 373, 382, 451, 561, 567
NlaIV	GGNNCC	2 cut(s)	390, 402
NsiI	ATGCAT	1 cut(s)	590
NspI	RCATGY	4 cut(s)	62, 451, 561, 567
PaeI	GCATGC	1 cut(s)	62
PctI	GAATGC	1 cut(s)	588
PfeI	GAWTC	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	280, 289, 319
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	390, 402
PstI	CTGCAG	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
RseI	CAYNNNNRTG	1 cut(s)	562
SaqAI	TTAA	2 cut(s)	27, 120
SatI	GCNGC	3 cut(s)	279, 288, 318
Sau3AI	GATC	2 cut(s)	455, 473
SchI	GAGTC	1 cut(s)	491
SetI	ASST	9 cut(s)	45, 81, 112, 142, 186, 255, 283, 355, 676
SfcI	CTRYAG	3 cut(s)	282, 315, 648
SmiMI	CAYNNNNRTG	1 cut(s)	562
SphI	GCATGC	1 cut(s)	62
Sse9I	AATT	4 cut(s)	49, 121, 488, 518
SspMI	CTAG	3 cut(s)	11, 137, 627
StyI	CCWWGG	1 cut(s)	349
TaqI	TCGA	1 cut(s)	429
TasI	AATT	4 cut(s)	49, 121, 488, 518
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	27, 120
Tru9I	TTAA	2 cut(s)	27, 120
TscAI	CASTG	2 cut(s)	214, 445
TseI	GCWGC	3 cut(s)	278, 287, 317
TspDTI	ATGAA	2 cut(s)	367, 380
TspRI	CASTG	2 cut(s)	214, 445
Van91I	CCANNNNNTGG	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	4 cut(s)	62, 451, 561, 567
XspI	CTAG	3 cut(s)	11, 137, 627
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.