Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001745

Physical Location & Seq

Genomic Coordinates Reverse (-)

10739687 .. 10740577

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG097400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGCACGTTCATTGGGCACATAGTACCTGGCTTTGCCCTCACCCTTCTTGGTTTATGGCACACCATCAACACTATCAGATCTTATTTTCTCAAAGGCCCCAGTAACTTTAGAGTAAGGTTTTGGTACCCATTGAACTGCCCTTTTTCCATTATTAAACACCTGGAACTCATTTTCATCTTATCTTTCTCTGTATTTGCGATTATTATGCAAGTTCTAGACTTCCCTTTTCTTAACTTCTCCTTCAAGCTCCATAATTTGGAGCATGCAACCATGTTCCTCCACCTTGCCATATTTGCAGGGTTTACGCTTTCAGCTGAGTTTATTAATTCGTTTCAAATCCTATCTGGGGTCGTTGGATTGCTTACGGCCTCTGTTTTCTGCCAAGAGCTTTTCCTTCTCCATTTCCACTCCACTGACCATGTTGGTCTTGAAGGGCATTACCATTGGTTATTACAGCTCATAGTGTTTGCTTCTGTCATGGCAGCTTTAGCAGCAACTTGTTGCCAAACCAGTCTTCCTGCAGCACTTGTTCTGTCTATTTCAGTTGTATTCCAAGGTTGCTGGTTTATGAACATGGGATTCATGCTCTGGGTTCCTAAGTTTGTTCCGAAGGGCTGTGTTGTCAGTCTCATCGAGGGTAGCAGTGATAACATGCTTGGATCATCAGTTACTTGTAGATCAAGTGAGTCAGAATTTAGGGCAAGGGCATTGGCCAACTTGCAATTTAGTTGGATACTTTCTGGGATTTTGATATTCACAGCATGTACATGCCTGAAGTTTGCTGGCAAATGCATTCCAAGAGTATCAATAGAGTATGAGCAACTCCATACTAGCAGAGGAGCAGATGTCCCTATAGTCATAAATGATTTCAAAGAAGCTCATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF716

Protein Analysis

296

Amino Acids

33.1

Weight (kDa)

7.19

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF716	PF04819	117 - 258	2.3e-45	Family of unknown function (DUF716)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49470
fragaria_vesca	FvH4_2g07340 FvH4_7g04431
malus_domestica	MD05G1072300.v1.1
prunus_persica	Prupe.8G112800_v2.0.a1
pyrus_communis	pycom10g06910
rosa_chinensis	RchiOBHm_Chr2g0124381 RchiOBHm_Chr6g0260041 RchiOBHm_Chr6g0260051 RchiOBHm_Chr6g0260061 RchiOBHm_Chr6g0260131 RchiOBHm_Chr6g0260141 RchiOBHm_Chr6g0260331 RchiOBHm_Chr6g0260341 RchiOBHm_Chr6g0260351 RchiOBHm_Chr6g0260371 RchiOBHm_Chr6g0260381 RchiOBHm_Chr6g0260551 RchiOBHm_Chr6g0260561 RchiOBHm_Chr6g0260601 RchiOBHm_Chr6g0260651 RchiOBHm_Chr6g0260741 RchiOBHm_Chr6g0260751
rosa_laevigata	RLG00000001835 RLG00000014496
rosa_multiflora	Rmu_sc0000414.1_g000007 Rmu_sc0000588.1_g000031 Rmu_sc0000588.1_g000055 Rmu_sc0005472.1_g000020 Rmu_sc0012140.1_g000021
rosa_roxburghii	Rroxscaffold_2G00119950 Rroxscaffold_6G00414150 Rroxscaffold_7G00201480 Rroxscaffold_7G00207300
rosa_rugosa	Rorug02G0250900 Rorug05G0591700 Rorug05G0592200
rosa_samantha	Rh2DG333400 Rh6AG108600 Rh6BG104100 Rh6BG105800 Rh6BG148300 Rh6CG097400 Rh6CG099200 Rh6DG091100 Rh7AG303500
rosa_wichuraiana	Rw2G024940 Rw6G009360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	259
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	797
AfaI	GTAC	3 cut(s)	27, 128, 769
AfiI	CCNNNNNNNGG	2 cut(s)	259, 349
AgsI	TTSAA	5 cut(s)	136, 247, 338, 434, 874
AjnI	CCWGG	2 cut(s)	28, 162
AjuI	GAANNNNNNNTTGG	2 cut(s)	501, 533
AluBI	AGCT	6 cut(s)	250, 317, 391, 460, 488, 881
AluI	AGCT	6 cut(s)	250, 317, 391, 460, 488, 881
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	3 cut(s)	97, 369, 714
ApeKI	GCWGC	3 cut(s)	485, 494, 524
ApoI	RAATTY	1 cut(s)	695
AseI	ATTAAT	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	34
BaeGI	GKGCMC	2 cut(s)	8, 21
BalI	TGGCCA	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	497, 506, 536
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	384
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BciT130I	CCWGG	2 cut(s)	30, 164
BciVI	GTATCC	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	635
BfaI	CTAG	2 cut(s)	218, 834
BfmI	CTRYAG	2 cut(s)	522, 855
BfuI	GTATCC	1 cut(s)	729
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	3 cut(s)	486, 495, 525
BlsI	GCNGC	3 cut(s)	487, 496, 526
Bme1390I	CCNGG	2 cut(s)	30, 164
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	3 cut(s)	100, 128, 597
BmrFI	CCNGG	2 cut(s)	30, 164
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	834, 864
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 349
Bse1I	ACTGG	2 cut(s)	102, 513
BseBI	CCWGG	2 cut(s)	30, 164
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	2 cut(s)	259, 349
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	102, 513
BseRI	GAGGAG	1 cut(s)	855
BseSI	GKGCMC	2 cut(s)	8, 21
BseXI	GCAGC	3 cut(s)	497, 506, 536
BshFI	GGCC	3 cut(s)	99, 371, 716
BshNI	GGYRCC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	836
BslI	CCNNNNNNNGG	2 cut(s)	259, 349
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	836
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	3 cut(s)	99, 371, 716
Bsp1286I	GDGCHC	2 cut(s)	8, 21
Bsp1407I	TGTACA	1 cut(s)	767
Bsp143I	GATC	3 cut(s)	80, 662, 680
BspANI	GGCC	3 cut(s)	99, 371, 716
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	100, 128, 597
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	126
BsrGI	TGTACA	1 cut(s)	767
BsrI	ACTGG	2 cut(s)	102, 513
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	3 cut(s)	80, 662, 680
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	30, 164
BstAUI	TGTACA	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	267, 787
BstDEI	CTNAG	3 cut(s)	318, 600, 888
BstF5I	GGATG	1 cut(s)	883
BstKTI	GATC	3 cut(s)	83, 665, 683
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	3 cut(s)	80, 662, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 491, 494
BstNI	CCWGG	2 cut(s)	30, 164
BstNSI	RCATGY	4 cut(s)	269, 658, 768, 774
BstSCI	CCNGG	2 cut(s)	28, 162
BstSFI	CTRYAG	2 cut(s)	522, 855
BstSLI	GKGCMC	2 cut(s)	8, 21
BstV1I	GCAGC	3 cut(s)	497, 506, 536
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	729
BsuRI	GGCC	3 cut(s)	99, 371, 716
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	414, 652
Cac8I	GCNNGC	2 cut(s)	267, 787
Cfr13I	GGNCC	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	26, 127, 768
CviAII	CATG	9 cut(s)	266, 274, 422, 481, 577, 586, 655, 765, 771
CviQI	GTAC	3 cut(s)	26, 127, 768
DdeI	CTNAG	3 cut(s)	318, 600, 888
DpnI	GATC	3 cut(s)	82, 664, 682
DpnII	GATC	3 cut(s)	80, 662, 680
EaeI	YGGCCR	1 cut(s)	714
Eco130I	CCWWGG	1 cut(s)	556
Eco57I	CTGAAG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	28, 162
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	9 cut(s)	269, 277, 425, 484, 580, 589, 658, 768, 774
FaqI	GGGAC	1 cut(s)	836
FatI	CATG	9 cut(s)	265, 273, 421, 480, 576, 585, 654, 764, 770
Fnu4HI	GCNGC	3 cut(s)	486, 495, 525
FokI	GGATG	1 cut(s)	870
Fsp4HI	GCNGC	3 cut(s)	486, 495, 525
FspBI	CTAG	2 cut(s)	218, 834
GluI	GCNGC	3 cut(s)	486, 495, 525
HaeIII	GGCC	3 cut(s)	99, 371, 716
Hin1II	CATG	9 cut(s)	269, 277, 425, 484, 580, 589, 658, 768, 774
HinfI	GANTC	2 cut(s)	582, 689
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	3 cut(s)	80, 612, 694
Hpy188III	TCNNGA	2 cut(s)	218, 431
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	5 cut(s)	56, 253, 407, 428, 607
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	6 cut(s)	211, 269, 299, 524, 724, 795
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 491, 494
HpyF3I	CTNAG	3 cut(s)	318, 600, 888
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	9 cut(s)	269, 277, 425, 484, 580, 589, 658, 768, 774
KpnI	GGTACC	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	80, 662, 680
LmnI	GCTCC	3 cut(s)	255, 262, 842
Lsp1109I	GCAGC	3 cut(s)	497, 506, 536
MaeI	CTAG	2 cut(s)	218, 834
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	104, 670
MalI	GATC	3 cut(s)	82, 664, 682
MboI	GATC	3 cut(s)	80, 662, 680
MboII	GAAGA	1 cut(s)	509
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	8, 21
MlsI	TGGCCA	1 cut(s)	716
MluCI	AATT	4 cut(s)	256, 328, 695, 725
MluNI	TGGCCA	1 cut(s)	716
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	2 cut(s)	337, 713
MnlI	CCTC	5 cut(s)	50, 290, 382, 631, 833
Mox20I	TGGCCA	1 cut(s)	716
Mph1103I	ATGCAT	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	716
MseI	TTAA	3 cut(s)	156, 234, 327
MslI	CAYNNNNRTG	1 cut(s)	769
Msp20I	TGGCCA	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	30, 164
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	2 cut(s)	30, 164
MwoI	GCNNNNNNNGC	3 cut(s)	296, 491, 494
NdeII	GATC	3 cut(s)	80, 662, 680
NlaIII	CATG	9 cut(s)	269, 277, 425, 484, 580, 589, 658, 768, 774
NlaIV	GGNNCC	3 cut(s)	100, 128, 597
NsiI	ATGCAT	1 cut(s)	797
NspI	RCATGY	4 cut(s)	269, 658, 768, 774
PaeI	GCATGC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	582
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	487, 496, 526
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PshBI	ATTAAT	1 cut(s)	327
Psp6I	CCWGG	2 cut(s)	28, 162
PspGI	CCWGG	2 cut(s)	28, 162
PspN4I	GGNNCC	3 cut(s)	100, 128, 597
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	3 cut(s)	27, 128, 769
RsaNI	GTAC	3 cut(s)	26, 127, 768
RseI	CAYNNNNRTG	1 cut(s)	769
SaqAI	TTAA	3 cut(s)	156, 234, 327
SatI	GCNGC	3 cut(s)	486, 495, 525
Sau3AI	GATC	3 cut(s)	80, 662, 680
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	2 cut(s)	30, 164
SduI	GDGCHC	2 cut(s)	8, 21
SfcI	CTRYAG	2 cut(s)	522, 855
SmiMI	CAYNNNNRTG	1 cut(s)	769
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	4 cut(s)	256, 328, 695, 725
SspMI	CTAG	2 cut(s)	218, 834
StyD4I	CCNGG	2 cut(s)	28, 162
StyI	CCWWGG	1 cut(s)	556
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	636
TasI	AATT	4 cut(s)	256, 328, 695, 725
TatI	WGTACW	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	582
Tru1I	TTAA	3 cut(s)	156, 234, 327
Tru9I	TTAA	3 cut(s)	156, 234, 327
TscAI	CASTG	2 cut(s)	421, 652
TseI	GCWGC	3 cut(s)	485, 494, 524
TspDTI	ATGAA	3 cut(s)	166, 574, 587
TspRI	CASTG	2 cut(s)	421, 652
Van91I	CCANNNNNTGG	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	1 cut(s)	695
XbaI	TCTAGA	1 cut(s)	217
XceI	RCATGY	4 cut(s)	269, 658, 768, 774
XspI	CTAG	2 cut(s)	218, 834
Zsp2I	ATGCAT	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.