Rmu_sc0000414.1_g000007

Family of unknown function (DUF716)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000414.1
OG0001745
Physical Location & Seq
Reverse (-)
25560 .. 26177
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000414.1_g000007.1.cds

Sequence Viewer

Length: 618 bp
atgttcctccaccttgccatatttgcagggtttacgctttccgctgagtttattaattcgtttcaaatcctatctggggtcgttgaattgcttacggcctctgttttctgccaagagcttttccttctccatttccactccactgaccatgttggtcttgaagggcattaccattggttattacagctcatagtgtttgcttctgtcatggcagctttagcagcaacttgttgccaaaccagtcttcctgcagcagttgttctgtctatttcagttgtcttccaaggttgctggtttatgaacatgggattcatgctctgggttcctaagtttgttccgaagggctgtgttgtcagtctcatcgagggtagcagtgataacatgcttggatcatcagttacttgtagatcaagtgagtcagaatttagggcaagggcattggccaacttgcaatttagttggatactttctgggattttgatattcacagcatgtacatgcctgaagtttgctggcaaatgcattccaagagtatcaatagagtatgagcaactccatactagcagaggagcagatgtccctatagtcataaatgatttcaaggaagctcatccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF716

Protein Analysis

205

Amino Acids

22.56

Weight (kDa)

6.02

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 397
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 524
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 4 cut(s) 65, 86, 161, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AluBI AGCT 4 cut(s) 118, 187, 215, 608
AluI AGCT 4 cut(s) 118, 187, 215, 608
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 96, 441
ApeKI GCWGC 3 cut(s) 212, 221, 251
ApoI RAATTY 1 cut(s) 422
AseI ATTAAT 1 cut(s) 54
BalI TGGCCA 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 236, 271
BbvI GCAGC 3 cut(s) 224, 233, 263
BceAI ACGGC 1 cut(s) 111
BciVI GTATCC 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 249, 582
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 3 cut(s) 213, 222, 252
BlsI GCNGC 3 cut(s) 214, 223, 253
BmiI GGNNCC 1 cut(s) 324
BpiI GAAGAC 2 cut(s) 236, 271
BsaJI CCNNGG 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 3 cut(s) 224, 233, 263
BshFI GGCC 2 cut(s) 98, 443
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 522
BsnI GGCC 2 cut(s) 98, 443
Bsp1407I TGTACA 1 cut(s) 494
Bsp143I GATC 2 cut(s) 389, 407
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 98, 443
BspCNI CTCAG 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 324
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 494
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 2 cut(s) 389, 407
BssT1I CCWWGG 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 514
BstDEI CTNAG 3 cut(s) 45, 327, 615
BstF5I GGATG 1 cut(s) 610
BstKTI GATC 2 cut(s) 392, 410
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 2 cut(s) 389, 407
BstMWI GCNNNNNNNGC 3 cut(s) 23, 218, 221
BstNSI RCATGY 3 cut(s) 385, 495, 501
BstSFI CTRYAG 2 cut(s) 249, 582
BstV1I GCAGC 3 cut(s) 224, 233, 263
BstV2I GAAGAC 2 cut(s) 236, 271
BsuI GTATCC 1 cut(s) 456
BsuRI GGCC 2 cut(s) 98, 443
BtsCI GGATG 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 141, 379
Cac8I GCNNGC 1 cut(s) 514
Csp6I GTAC 1 cut(s) 495
CviAII CATG 7 cut(s) 149, 208, 304, 313, 382, 492, 498
CviJI RGCY 7 cut(s) 98, 118, 187, 215, 345, 443, 608
CviKI_1 RGCY 7 cut(s) 98, 118, 187, 215, 345, 443, 608
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 3 cut(s) 45, 327, 615
DpnI GATC 2 cut(s) 391, 409
DpnII GATC 2 cut(s) 389, 407
EaeI YGGCCR 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 7 cut(s) 152, 211, 307, 316, 385, 495, 501
FaqI GGGAC 1 cut(s) 563
FatI CATG 7 cut(s) 148, 207, 303, 312, 381, 491, 497
Fnu4HI GCNGC 3 cut(s) 213, 222, 252
FokI GGATG 1 cut(s) 597
Fsp4HI GCNGC 3 cut(s) 213, 222, 252
FspBI CTAG 1 cut(s) 561
GluI GCNGC 3 cut(s) 213, 222, 252
HaeIII GGCC 2 cut(s) 98, 443
Hin1II CATG 7 cut(s) 152, 211, 307, 316, 385, 495, 501
HinfI GANTC 2 cut(s) 309, 416
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 339, 421
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 134, 155, 334
HpyCH4V TGCA 4 cut(s) 26, 251, 451, 522
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 218, 221
HpyF3I CTNAG 3 cut(s) 45, 327, 615
Hsp92II CATG 7 cut(s) 152, 211, 307, 316, 385, 495, 501
Kzo9I GATC 2 cut(s) 389, 407
LmnI GCTCC 1 cut(s) 569
LpnPI CCDG 9 cut(s) 12, 60, 253, 261, 277, 304, 456, 498, 515
Lsp1109I GCAGC 3 cut(s) 224, 233, 263
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 1 cut(s) 397
MalI GATC 2 cut(s) 391, 409
MboI GATC 2 cut(s) 389, 407
MboII GAAGA 2 cut(s) 236, 271
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 4 cut(s) 55, 86, 422, 452
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 440
MnlI CCTC 4 cut(s) 17, 109, 358, 560
Mox20I TGGCCA 1 cut(s) 443
Mph1103I ATGCAT 1 cut(s) 524
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 496
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 522
MwoI GCNNNNNNNGC 3 cut(s) 23, 218, 221
NdeII GATC 2 cut(s) 389, 407
NlaIII CATG 7 cut(s) 152, 211, 307, 316, 385, 495, 501
NlaIV GGNNCC 1 cut(s) 324
NsiI ATGCAT 1 cut(s) 524
NspI RCATGY 3 cut(s) 385, 495, 501
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 309
PkrI GCNGC 3 cut(s) 214, 223, 253
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PshBI ATTAAT 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 324
PstI CTGCAG 1 cut(s) 253
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 496
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 213, 222, 252
Sau3AI GATC 2 cut(s) 389, 407
SchI GAGTC 1 cut(s) 425
SetI ASST 6 cut(s) 15, 120, 189, 217, 289, 610
SfcI CTRYAG 2 cut(s) 249, 582
SmiMI CAYNNNNRTG 1 cut(s) 496
Sse9I AATT 4 cut(s) 55, 86, 422, 452
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 1 cut(s) 363
TasI AATT 4 cut(s) 55, 86, 422, 452
TatI WGTACW 1 cut(s) 494
TfiI GAWTC 1 cut(s) 309
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 2 cut(s) 148, 379
TseI GCWGC 3 cut(s) 212, 221, 251
TspDTI ATGAA 2 cut(s) 301, 314
TspRI CASTG 2 cut(s) 148, 379
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 422
XceI RCATGY 3 cut(s) 385, 495, 501
XspI CTAG 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.