Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

20276842 .. 20280180

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27001.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGAAACAGTTGGTGACAAGCGTTTGAAGCTTACGGACATGCCTCTCACTCATCCCAAATACTATCAACAAGGATATGCCGGCTGCCCTAGTCTTACTATCCAACAGAACCAACCAGAACCGATGCAGCGGGATGGTGGTTGTGGTGCTGGATATGTTAACCAGCCACCTTATCAGCAACTTCAGACACAGGGGAAGGAGAAGGAGCTGTATCTATGTTTCGAAGAAGTCAGCTTTCCAACAAGTTGTTACGTCTTACGCACCATCAAACTTTCCGAGTTATTGGCATGCTCTTGTAACTTTAGCACCGAAACTTGCACAATAACCAAGTGCCGAAATTGCACCCCCAAAACCAAACAGGAACATCAGTTGCGCCTGCGGGCTTGGCTTTTCACTGGGGAGAAAGTCCCCCCAAGCTGCGGCCTTGTGGAGAGAATCCCAGAGAGTATGAGTTGCTGTGCCTACGGCTCCCAAATGTTCCTCACCGGTGGCGTGGTTCCCCCACCAGATGCAGACACAGCGAATTATGTGCCTAGTGGAGATGTCTATAGTTTTAAGCCGGAGTCTACTATTTGGCAAAAGGTTGATTGGAGTTGCCCAAAGGTGAAACCAAATCCCTTGCTTTTTGAGGTGAATGGAAAACTCTATTGTCTCGCAGCCTGTGGTTCTCTTGGAGTTACCAGTTCTGGTGGATGTTTGGTTCTGCCGGATCCTATAGCTAACGTGCCGAGACTAAAAAGTTGGCTTGGTCTTGCAAACTACATTACTTTTGATAAATTGGCTTGTGCTGTTGTTGGATCCAAGATCTTGATCTCGTTTCTAGAGCCTTACCTTTGCGACCTTCCCATTATTTGCTTTGACGTAAATGACAAGGAAAAGGAATGGAGAGTGATGACTTCCTTGTTTAATGGTAAGCCTTTTCCCTTCGTTGGCAGGGCTTTAGTCTTGGACTTGAAAGGTACACATGTCATGTTCTCCTTTTGTAATCAGCGCTATATATGTGTCTCTCAATTAGCACTGAATGATGATGGCGATATAAGCATCTCTCAAGAAAAATGTTTTATGGTTCTTGGCTTGGTCGATACCTTGATGAAATACACTGATCCACTGTCATACAACTTTGTCGATCTTGGAGATCAATGTGTTGCCCTTGTTTTGTGTGGCAACATTTCTTCTTATGGAGAGGATTATGGACATTTTCTCGGGAAGGTGCGTGTTGTTGTAGTAGTGATTCACTATGAAGTATTGAGTTCAAATTGTATCACAAGTAATATCAAGGCCACTCGCACCTTTGAGTACAATTGTCATTCCTCGGACATCCTTCTTACTCACTTGACCGGTGGCTTTGTGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

452

Amino Acids

50.05

Weight (kDa)

6.02

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	566
AciI	CCGC	3 cut(s)	130, 379, 420
AclWI	GGATC	5 cut(s)	704, 717, 792, 805, 1097
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	961, 1298
AfeI	AGCGCT	1 cut(s)	992
AfiI	CCNNNNNNNGG	2 cut(s)	419, 929
AflIII	ACRYGT	1 cut(s)	964
AgeI	ACCGGT	2 cut(s)	485, 1337
AgsI	TTSAA	3 cut(s)	28, 955, 1254
AloI	GAACNNNNNNTCC	2 cut(s)	684, 716
AluBI	AGCT	5 cut(s)	31, 208, 234, 417, 719
AluI	AGCT	5 cut(s)	31, 208, 234, 417, 719
Alw26I	GTCTC	3 cut(s)	656, 724, 1009
AlwI	GGATC	5 cut(s)	704, 717, 792, 805, 1097
Ama87I	CYCGRG	1 cut(s)	1202
Aor51HI	AGCGCT	1 cut(s)	992
AoxI	GGCC	2 cut(s)	421, 1278
ApeKI	GCWGC	4 cut(s)	84, 127, 417, 656
AsiGI	ACCGGT	2 cut(s)	485, 1337
AspLEI	GCGC	2 cut(s)	375, 993
AsuHPI	GGTGA	4 cut(s)	26, 475, 616, 643
AsuII	TTCGAA	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	1202
BaeI	ACNNNNGTAYC	2 cut(s)	951, 984
BamHI	GGATCC	2 cut(s)	709, 797
BbvI	GCAGC	4 cut(s)	71, 139, 404, 668
BccI	CCATC	3 cut(s)	128, 272, 1022
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BcoDI	GTCTC	3 cut(s)	656, 724, 1009
BfaI	CTAG	3 cut(s)	90, 534, 821
BfmI	CTRYAG	2 cut(s)	547, 714
BfoI	RGCGCY	1 cut(s)	994
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	5 cut(s)	85, 128, 418, 421, 657
BlsI	GCNGC	5 cut(s)	86, 129, 419, 422, 658
BmeT110I	CYCGRG	1 cut(s)	1202
BmiI	GGNNCC	4 cut(s)	469, 498, 711, 799
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	3 cut(s)	114, 499, 1050
BmuI	ACTGGG	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	1032
BsaBI	GATNNNNATC	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	1311
BsaWI	WCCGGW	2 cut(s)	485, 1337
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 929
Bse118I	RCCGGY	3 cut(s)	80, 485, 1337
Bse1I	ACTGG	2 cut(s)	400, 681
Bse8I	GATNNNNATC	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	1311
BseGI	GGATG	4 cut(s)	52, 139, 698, 1317
BseJI	GATNNNNATC	1 cut(s)	809
BseLI	CCNNNNNNNGG	2 cut(s)	419, 929
BseNI	ACTGG	2 cut(s)	400, 681
BseXI	GCAGC	4 cut(s)	71, 139, 404, 668
BshFI	GGCC	2 cut(s)	423, 1280
BshTI	ACCGGT	2 cut(s)	485, 1337
BsiHKCI	CYCGRG	1 cut(s)	1202
BsiSI	CCGG	5 cut(s)	81, 486, 560, 707, 1338
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	419, 929
BsmAI	GTCTC	3 cut(s)	656, 724, 1009
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	423, 1280
BsoBI	CYCGRG	1 cut(s)	1202
Bsp119I	TTCGAA	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
BspACI	CCGC	3 cut(s)	130, 379, 420
BspANI	GGCC	2 cut(s)	423, 1280
BspLI	GGNNCC	4 cut(s)	469, 498, 711, 799
BspPI	GGATC	5 cut(s)	704, 717, 792, 805, 1097
BspT104I	TTCGAA	1 cut(s)	222
BsrFI	RCCGGY	3 cut(s)	80, 485, 1337
BsrI	ACTGG	2 cut(s)	400, 681
BssAI	RCCGGY	3 cut(s)	80, 485, 1337
BssECI	CCNNGG	1 cut(s)	1311
BssMI	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
Bst4CI	ACNGT	2 cut(s)	10, 1110
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	4 cut(s)	82, 289, 377, 381
BstF5I	GGATG	4 cut(s)	52, 139, 698, 1317
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	2 cut(s)	375, 993
BstKTI	GATC	7 cut(s)	712, 800, 807, 813, 1105, 1129, 1138
BstMAI	GTCTC	3 cut(s)	656, 724, 1009
BstMBI	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 339, 385, 518, 1038
BstNSI	RCATGY	3 cut(s)	43, 291, 968
BstSFI	CTRYAG	2 cut(s)	547, 714
BstV1I	GCAGC	4 cut(s)	71, 139, 404, 668
BstX2I	RGATCY	3 cut(s)	709, 797, 804
BstYI	RGATCY	3 cut(s)	709, 797, 804
BsuRI	GGCC	2 cut(s)	423, 1280
BtsCI	GGATG	4 cut(s)	52, 139, 698, 1317
BtsIMutI	CAGTG	4 cut(s)	393, 1016, 1098, 1106
Cac8I	GCNNGC	4 cut(s)	82, 289, 377, 381
CfoI	GCGC	2 cut(s)	375, 993
Cfr10I	RCCGGY	3 cut(s)	80, 485, 1337
Csp6I	GTAC	2 cut(s)	960, 1297
CspAI	ACCGGT	2 cut(s)	485, 1337
CviAII	CATG	4 cut(s)	40, 288, 965, 970
CviQI	GTAC	2 cut(s)	960, 1297
DpnI	GATC	7 cut(s)	711, 799, 806, 812, 1104, 1128, 1137
DpnII	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
Eco47III	AGCGCT	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	1202
FaeI	CATG	4 cut(s)	43, 291, 968, 973
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	4 cut(s)	39, 287, 964, 969
FauI	CCCGC	2 cut(s)	123, 372
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	5 cut(s)	85, 128, 418, 421, 657
FokI	GGATG	4 cut(s)	39, 146, 705, 1304
Fsp4HI	GCNGC	5 cut(s)	85, 128, 418, 421, 657
FspBI	CTAG	3 cut(s)	90, 534, 821
GlaI	GCGC	2 cut(s)	374, 992
GluI	GCNGC	5 cut(s)	85, 128, 418, 421, 657
HaeII	RGCGCY	1 cut(s)	994
HaeIII	GGCC	2 cut(s)	423, 1280
HapII	CCGG	5 cut(s)	81, 486, 560, 707, 1338
HhaI	GCGC	2 cut(s)	375, 993
Hin1II	CATG	4 cut(s)	43, 291, 968, 973
Hin6I	GCGC	2 cut(s)	373, 991
HinP1I	GCGC	2 cut(s)	373, 991
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	435, 563, 1231
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	5 cut(s)	81, 486, 560, 707, 1338
HphI	GGTGA	4 cut(s)	26, 475, 616, 643
Hpy166II	GTNNAC	3 cut(s)	160, 567, 962
Hpy188I	TCNGA	3 cut(s)	186, 277, 1315
Hpy188III	TCNNGA	4 cut(s)	808, 821, 1049, 1204
Hpy8I	GTNNAC	3 cut(s)	160, 567, 962
HpyAV	CCTTC	6 cut(s)	190, 196, 851, 934, 1201, 1331
HpyCH4III	ACNGT	2 cut(s)	10, 1110
HpyCH4IV	ACGT	3 cut(s)	252, 723, 861
HpyCH4V	TGCA	5 cut(s)	127, 318, 342, 512, 755
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 339, 385, 518, 1038
HpySE526I	ACGT	3 cut(s)	252, 723, 861
Hsp92II	CATG	4 cut(s)	43, 291, 968, 973
HspAI	GCGC	2 cut(s)	373, 991
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
LmnI	GCTCC	2 cut(s)	205, 473
Lsp1109I	GCAGC	4 cut(s)	71, 139, 404, 668
LweI	GCATC	3 cut(s)	114, 499, 1050
MaeI	CTAG	3 cut(s)	90, 534, 821
MaeII	ACGT	3 cut(s)	252, 723, 861
MaeIII	GTNAC	4 cut(s)	14, 248, 296, 676
MalI	GATC	7 cut(s)	711, 799, 806, 812, 1104, 1128, 1137
MboI	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
MboII	GAAGA	2 cut(s)	236, 1164
MfeI	CAATTG	1 cut(s)	1300
MflI	RGATCY	3 cut(s)	709, 797, 804
MluCI	AATT	6 cut(s)	337, 523, 776, 1010, 1255, 1300
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	3 cut(s)	127, 263, 775
MnlI	CCTC	5 cut(s)	54, 491, 622, 1177, 1321
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	3 cut(s)	159, 555, 906
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	5 cut(s)	81, 486, 560, 707, 1338
MunI	CAATTG	1 cut(s)	1300
MwoI	GCNNNNNNNGC	5 cut(s)	28, 339, 385, 518, 1038
NaeI	GCCGGC	1 cut(s)	82
NdeII	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	4 cut(s)	43, 291, 968, 973
NlaIV	GGNNCC	4 cut(s)	469, 498, 711, 799
NmeAIII	GCCGAG	1 cut(s)	753
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	3 cut(s)	43, 291, 968
NspV	TTCGAA	1 cut(s)	222
PaeI	GCATGC	1 cut(s)	291
PciI	ACATGT	1 cut(s)	964
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	435, 1231
PinAI	ACCGGT	2 cut(s)	485, 1337
PkrI	GCNGC	5 cut(s)	86, 129, 419, 422, 658
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PscI	ACATGT	1 cut(s)	964
PspN4I	GGNNCC	4 cut(s)	469, 498, 711, 799
PsuI	RGATCY	3 cut(s)	709, 797, 804
RsaI	GTAC	2 cut(s)	961, 1298
RsaNI	GTAC	2 cut(s)	960, 1297
SaqAI	TTAA	3 cut(s)	159, 555, 906
SatI	GCNGC	5 cut(s)	85, 128, 418, 421, 657
Sau3AI	GATC	7 cut(s)	709, 797, 804, 810, 1102, 1126, 1135
SchI	GAGTC	1 cut(s)	572
SfaNI	GCATC	3 cut(s)	114, 499, 1050
SfcI	CTRYAG	2 cut(s)	547, 714
SfuI	TTCGAA	1 cut(s)	222
SgrAI	CRCCGGYG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	1047
SmoI	CTYRAG	1 cut(s)	1047
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	6 cut(s)	337, 523, 776, 1010, 1255, 1300
SsiI	CCGC	3 cut(s)	130, 379, 420
SspMI	CTAG	3 cut(s)	90, 534, 821
TaaI	ACNGT	2 cut(s)	10, 1110
TaiI	ACGT	3 cut(s)	255, 726, 864
TaqI	TCGA	3 cut(s)	222, 1080, 1125
TasI	AATT	6 cut(s)	337, 523, 776, 1010, 1255, 1300
TatI	WGTACW	1 cut(s)	1296
TauI	GCSGC	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	435, 1231
Tru1I	TTAA	3 cut(s)	159, 555, 906
Tru9I	TTAA	3 cut(s)	159, 555, 906
TscAI	CASTG	4 cut(s)	400, 1023, 1105, 1113
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	4 cut(s)	84, 127, 417, 656
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	1106, 1254
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	4 cut(s)	400, 1023, 1105, 1113
XbaI	TCTAGA	1 cut(s)	820
XceI	RCATGY	3 cut(s)	43, 291, 968
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	3 cut(s)	90, 534, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.