Rw1G038950

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000753
Physical Location & Seq
Forward (+)
66479982 .. 66481009
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038950.1

Sequence Viewer

Length: 966 bp
ATGGTGATAGTGGTGCTGGCCTGGGTTTATGTTTATCCAGAAGTCCAGAACAACATGATGGATCACCTTAACCTGTATCACGGAGGACAGCCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCGCAGCCTTGTGCTTACCAGCTGCCTTATCAGCAACATCAGACACAGTGGACTGTTGGCAGTGATGTGAGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCACAGGAGAAGAAGCTGTATTTATGTTTCCATGAGCGCAATGACCAAAGGTCCAAAGCAATTGTTGTTACGTTCTCCGCACCATCAATGTTGTCCGAGTTACTTGCATGCTCCTCCCAACCGGAATCTCAGTTGCGCACTTGCGCCAGCGAGGAAGTTCCCTACAGCTGCTATAGCGCGGAGGCGATAATCCCTTCGCCTATGGGTTGCTGTGCCTCCGGCTCCCAAATCTTCTTCGCCGGTGGCATGGCTCCACTACCACATAGGGAAAGACGATATCTGCCAAGTGGAGATGTCTATAGTTTTGAACCCAACTCTACGTTTTGGAGAAAGCATGAATGGAGTTTCCTGAAGGGGAAACCAGACCCCTTGCTTTTTGAGGTGAACGAAAATCTCTATTGTCTCGCAGGTAGGCCCCTAGGTTATTCTCTTGATCATCCCACTTTCGAGGTATACTATAGCAGCTCTGGTGAATGTGAGGCTCTGCTGGATCCTCCACTTTACCTACCGGAACTAGATCGCGACAAAAACTACAGCGGCCCTTTTCCTGGTCGTGAATTGTCTTATGCTATTGTTGGTACCAAGATCTTGATCTCGAGCAGGCACAACAATGAATCAATCCCTAACTTTCCCATTATGTGCTTTGTTGTGAATGACAAGGAAAAGAAATGGAGAGAGATGACATCGAACAGGTAA

Protein Analysis

321

Amino Acids

36.6

Weight (kDa)

5.8

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 407
Acc36I ACCTGC 2 cut(s) 237, 668
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 723
AccII CGCG 2 cut(s) 449, 792
AciI CCGC 4 cut(s) 128, 348, 449, 807
AclWI GGATC 3 cut(s) 69, 755, 768
AcuI CTGAAG 1 cut(s) 641
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 1 cut(s) 818
AgsI TTSAA 1 cut(s) 578
AhdI GACNNNNNGTC 1 cut(s) 319
AjnI CCWGG 3 cut(s) 20, 91, 817
AluBI AGCT 5 cut(s) 148, 211, 286, 438, 735
AluI AGCT 5 cut(s) 148, 211, 286, 438, 735
Alw26I GTCTC 3 cut(s) 125, 269, 677
AlwI GGATC 3 cut(s) 69, 755, 768
Ama87I CYCGRG 1 cut(s) 865
AoxI GGCC 3 cut(s) 18, 683, 808
ApeKI GCWGC 7 cut(s) 112, 130, 148, 208, 256, 438, 732
Asp718I GGTACC 1 cut(s) 848
AspA2I CCTAGG 1 cut(s) 688
AspLEI GCGC 4 cut(s) 309, 408, 416, 449
AspS9I GGNCC 3 cut(s) 321, 684, 809
AsuHPI GGTGA 5 cut(s) 16, 56, 205, 664, 752
AvaI CYCGRG 1 cut(s) 865
AvaII GGWCC 1 cut(s) 321
AvrII CCTAGG 1 cut(s) 688
BamHI GGATCC 1 cut(s) 760
BanI GGYRCC 1 cut(s) 848
BbvI GCAGC 7 cut(s) 124, 135, 142, 220, 268, 425, 744
BccI CCATC 2 cut(s) 52, 361
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 3 cut(s) 22, 93, 819
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 125, 269, 677
BfaI CTAG 2 cut(s) 689, 785
BfmI CTRYAG 6 cut(s) 230, 433, 442, 568, 727, 802
BfuAI ACCTGC 2 cut(s) 237, 668
BglII AGATCT 1 cut(s) 855
BisI GCNGC 8 cut(s) 113, 131, 149, 209, 257, 439, 733, 808
BlnI CCTAGG 1 cut(s) 688
BlsI GCNGC 8 cut(s) 114, 132, 150, 210, 258, 440, 734, 809
Bme1390I CCNGG 3 cut(s) 22, 93, 819
Bme18I GGWCC 1 cut(s) 321
BmeRI GACNNNNNGTC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 865
BmgT120I GGNCC 3 cut(s) 321, 684, 809
BmiI GGNNCC 5 cut(s) 493, 522, 686, 762, 850
BmrFI CCNGG 3 cut(s) 22, 93, 819
BsaBI GATNNNNATC 1 cut(s) 860
BsaI GGTCTC 2 cut(s) 125, 269
BsaJI CCNNGG 2 cut(s) 21, 688
BsaWI WCCGGW 2 cut(s) 391, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse118I RCCGGY 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 860
BseBI CCWGG 3 cut(s) 22, 93, 819
BseDI CCNNGG 2 cut(s) 21, 688
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 1 cut(s) 818
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 373
BseXI GCAGC 7 cut(s) 124, 135, 142, 220, 268, 425, 744
Bsh1236I CGCG 2 cut(s) 449, 792
BshFI GGCC 3 cut(s) 20, 685, 810
BshNI GGYRCC 1 cut(s) 848
BsiHKCI CYCGRG 1 cut(s) 865
BsiSI CCGG 4 cut(s) 392, 489, 510, 779
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 3 cut(s) 125, 269, 677
BsnI GGCC 3 cut(s) 20, 685, 810
Bso31I GGTCTC 2 cut(s) 125, 269
BsoBI CYCGRG 1 cut(s) 865
Bsp143I GATC 6 cut(s) 61, 703, 760, 787, 855, 861
Bsp68I TCGCGA 1 cut(s) 792
BspACI CCGC 4 cut(s) 128, 348, 449, 807
BspANI GGCC 3 cut(s) 20, 685, 810
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 2 cut(s) 449, 792
BspLI GGNNCC 5 cut(s) 493, 522, 686, 762, 850
BspMAI CTGCAG 1 cut(s) 234
BspMI ACCTGC 2 cut(s) 237, 668
BspPI GGATC 3 cut(s) 69, 755, 768
BspT107I GGYRCC 1 cut(s) 848
BspTNI GGTCTC 2 cut(s) 125, 269
BsrDI GCAATG 1 cut(s) 316
BsrFI RCCGGY 1 cut(s) 509
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 21, 688
BssMI GATC 6 cut(s) 61, 703, 760, 787, 855, 861
BssNAI GTATAC 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 688
Bst1107I GTATAC 1 cut(s) 724
Bst2UI CCWGG 3 cut(s) 22, 93, 819
Bst4CI ACNGT 2 cut(s) 174, 181
BstC8I GCNNGC 5 cut(s) 18, 234, 379, 418, 872
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 2 cut(s) 449, 792
BstHHI GCGC 4 cut(s) 309, 408, 416, 449
BstKTI GATC 6 cut(s) 64, 706, 763, 790, 858, 864
BstMAI GTCTC 3 cut(s) 125, 269, 677
BstMBI GATC 6 cut(s) 61, 703, 760, 787, 855, 861
BstMWI GCNNNNNNNGC 2 cut(s) 157, 444
BstNI CCWGG 3 cut(s) 22, 93, 819
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 3 cut(s) 20, 91, 817
BstSFI CTRYAG 6 cut(s) 230, 433, 442, 568, 727, 802
BstUI CGCG 2 cut(s) 449, 792
BstV1I GCAGC 7 cut(s) 124, 135, 142, 220, 268, 425, 744
BstX2I RGATCY 2 cut(s) 760, 855
BstXI CCANNNNNNTGG 2 cut(s) 116, 260
BstYI RGATCY 2 cut(s) 760, 855
BstZ17I GTATAC 1 cut(s) 724
BsuRI GGCC 3 cut(s) 20, 685, 810
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 2 cut(s) 179, 193
BtuMI TCGCGA 1 cut(s) 792
BveI ACCTGC 2 cut(s) 237, 668
Cac8I GCNNGC 5 cut(s) 18, 234, 379, 418, 872
CfoI GCGC 4 cut(s) 309, 408, 416, 449
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 3 cut(s) 321, 684, 809
Csp6I GTAC 1 cut(s) 849
CviAII CATG 7 cut(s) 55, 116, 260, 302, 378, 517, 605
CviQI GTAC 1 cut(s) 849
DdeI CTNAG 1 cut(s) 399
DpnI GATC 6 cut(s) 63, 705, 762, 789, 857, 863
DpnII GATC 6 cut(s) 61, 703, 760, 787, 855, 861
DriI GACNNNNNGTC 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 688
Eco31I GGTCTC 2 cut(s) 125, 269
Eco32I GATATC 1 cut(s) 548
Eco47I GGWCC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 641
Eco88I CYCGRG 1 cut(s) 865
EcoO109I RGGNCCY 1 cut(s) 684
EcoRII CCWGG 3 cut(s) 20, 91, 817
EcoRV GATATC 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 688
ErhI CCWWGG 1 cut(s) 688
FaeI CATG 7 cut(s) 58, 119, 263, 305, 381, 520, 608
FatI CATG 7 cut(s) 54, 115, 259, 301, 377, 516, 604
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 8 cut(s) 113, 131, 149, 209, 257, 439, 733, 808
FokI GGATG 1 cut(s) 693
Fsp4HI GCNGC 8 cut(s) 113, 131, 149, 209, 257, 439, 733, 808
FspBI CTAG 2 cut(s) 689, 785
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 4 cut(s) 308, 407, 415, 448
GluI GCNGC 8 cut(s) 113, 131, 149, 209, 257, 439, 733, 808
HaeIII GGCC 3 cut(s) 20, 685, 810
HapII CCGG 4 cut(s) 392, 489, 510, 779
HhaI GCGC 4 cut(s) 309, 408, 416, 449
Hin1II CATG 7 cut(s) 58, 119, 263, 305, 381, 520, 608
Hin6I GCGC 4 cut(s) 307, 406, 414, 447
HinP1I GCGC 4 cut(s) 307, 406, 414, 447
HinfI GANTC 3 cut(s) 196, 395, 884
HpaII CCGG 4 cut(s) 392, 489, 510, 779
HphI GGTGA 5 cut(s) 16, 56, 205, 664, 752
Hpy166II GTNNAC 4 cut(s) 177, 200, 655, 724
Hpy188I TCNGA 2 cut(s) 168, 367
Hpy188III TCNNGA 8 cut(s) 38, 46, 619, 701, 791, 824, 859, 865
Hpy8I GTNNAC 4 cut(s) 177, 200, 655, 724
HpyAV CCTTC 2 cut(s) 474, 616
HpyCH4III ACNGT 2 cut(s) 174, 181
HpyCH4IV ACGT 2 cut(s) 341, 590
HpyCH4V TGCA 2 cut(s) 232, 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 444
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 341, 590
Hsp92II CATG 7 cut(s) 58, 119, 263, 305, 381, 520, 608
HspAI GCGC 4 cut(s) 307, 406, 414, 447
KpnI GGTACC 1 cut(s) 852
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 6 cut(s) 61, 703, 760, 787, 855, 861
LmnI GCTCC 3 cut(s) 386, 497, 526
Lsp1109I GCAGC 7 cut(s) 124, 135, 142, 220, 268, 425, 744
MaeI CTAG 2 cut(s) 689, 785
MaeII ACGT 2 cut(s) 341, 590
MaeIII GTNAC 2 cut(s) 337, 369
MalI GATC 6 cut(s) 63, 705, 762, 789, 857, 863
MboI GATC 6 cut(s) 61, 703, 760, 787, 855, 861
MboII GAAGA 3 cut(s) 292, 493, 496
MfeI CAATTG 1 cut(s) 330
MflI RGATCY 2 cut(s) 760, 855
MluCI AATT 4 cut(s) 103, 247, 330, 827
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 9 cut(s) 77, 394, 415, 445, 496, 643, 712, 742, 774
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 3 cut(s) 148, 438, 807
MspI CCGG 4 cut(s) 392, 489, 510, 779
MspR9I CCNGG 3 cut(s) 22, 93, 819
MunI CAATTG 1 cut(s) 330
MvaI CCWGG 3 cut(s) 22, 93, 819
MvnI CGCG 2 cut(s) 449, 792
MwoI GCNNNNNNNGC 2 cut(s) 157, 444
NdeII GATC 6 cut(s) 61, 703, 760, 787, 855, 861
NlaIII CATG 7 cut(s) 58, 119, 263, 305, 381, 520, 608
NlaIV GGNNCC 5 cut(s) 493, 522, 686, 762, 850
NruI TCGCGA 1 cut(s) 792
NsbI TGCGCA 1 cut(s) 407
NspI RCATGY 1 cut(s) 381
PaeI GCATGC 1 cut(s) 381
PaeR7I CTCGAG 1 cut(s) 865
PfeI GAWTC 2 cut(s) 395, 884
PkrI GCNGC 8 cut(s) 114, 132, 150, 210, 258, 440, 734, 809
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
Psp6I CCWGG 3 cut(s) 20, 91, 817
PspGI CCWGG 3 cut(s) 20, 91, 817
PspN4I GGNNCC 5 cut(s) 493, 522, 686, 762, 850
PspPI GGNCC 3 cut(s) 321, 684, 809
PstI CTGCAG 1 cut(s) 234
PsuI RGATCY 2 cut(s) 760, 855
PvuII CAGCTG 2 cut(s) 148, 438
RruI TCGCGA 1 cut(s) 792
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
RseI CAYNNNNRTG 1 cut(s) 879
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 8 cut(s) 113, 131, 149, 209, 257, 439, 733, 808
Sau3AI GATC 6 cut(s) 61, 703, 760, 787, 855, 861
Sau96I GGNCC 3 cut(s) 321, 684, 809
SbfI CCTGCAGG 1 cut(s) 234
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 22, 93, 819
SdaI CCTGCAGG 1 cut(s) 234
SfcI CTRYAG 6 cut(s) 230, 433, 442, 568, 727, 802
Sfr274I CTCGAG 1 cut(s) 865
SgrAI CRCCGGYG 1 cut(s) 509
SinI GGWCC 1 cut(s) 321
SlaI CTCGAG 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
SphI GCATGC 1 cut(s) 381
Sse8387I CCTGCAGG 1 cut(s) 234
Sse9I AATT 4 cut(s) 103, 247, 330, 827
SsiI CCGC 4 cut(s) 128, 348, 449, 807
SspMI CTAG 2 cut(s) 689, 785
StyD4I CCNGG 3 cut(s) 20, 91, 817
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 174, 181
TaiI ACGT 2 cut(s) 344, 593
TaqI TCGA 3 cut(s) 717, 866, 956
TasI AATT 4 cut(s) 103, 247, 330, 827
TauI GCSGC 1 cut(s) 810
TfiI GAWTC 2 cut(s) 395, 884
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 179, 193
TseI GCWGC 7 cut(s) 112, 130, 148, 208, 256, 438, 732
TspDTI ATGAA 2 cut(s) 621, 897
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 179, 193
VpaK11BI GGWCC 1 cut(s) 321
XceI RCATGY 1 cut(s) 381
XhoI CTCGAG 1 cut(s) 865
XmaJI CCTAGG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 2 cut(s) 689, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.