Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

52459603 .. 52460310

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACATTCTGTTCTGGAATTGCCGAGGGATTTGCAATCCCTCTACAAGGCGTGCTTTGAAGACTTTGATCTCACAGCACAAGCCAGCGATCGTCTTTCTGATTAAAACGAAGATCAGAGAGAAGGAGGAGTTTGGAAGGCTGCAGCGGACTCTAGGGTTTGATCATGTAGAGGGTTTTTTAAGTGTAGGCCAATCCGGAAGGTTGGGTTTGTTCTGGAACGAGGAAACTAGGGTTCGTATTCGTCAGCCCTCACATGCGCGGTTCATTGACGCGGTGGTGGATGATGACAATGGACTATTCCGGTGGAGACTTACATGCTTTTACGGCAATCCTTCGGCGGCAGAAAGACAGGAGTCGTGGAATTTGATTCGATCGTTAAGTGACGATGATTCACTGCCTTGGGTGGTTCTTGGTGATTTCAATGAGATTGTGCATTCGTCGGAGAAATTGGATGGGAGATTGAGGCCGGAAAGTCAGATGCGGGGCTTCCGGGAAGCCCTGAGTTATGCTGAGTTGGTGGATTTAGGTTTTCATGGTTGTCCGTATACTTGGAGTGATTCTGAAACTAAGGTTCGGCTGGATAGGGTGGTGGTCACGGCAGCCTGGCTTGATTGCTTTTCGCATTCCAGAGTGATCCATCTGCCGCCCAGTAAATCGGATCACATTCCAATTTTGCTCCGAGTTAGCGCGAGTCCAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

235

Amino Acids

27.01

Weight (kDa)

7.72

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	5 - 222	4e-13	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	3 cut(s)	262, 275, 692
AccIII	TCCGGA	1 cut(s)	197
AciI	CCGC	6 cut(s)	148, 262, 275, 341, 484, 647
AclWI	GGATC	2 cut(s)	631, 669
AcsI	RAATTY	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	61, 424
AjnI	CCWGG	1 cut(s)	605
AloI	GAACNNNNNNTCC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	631, 669
Aor13HI	TCCGGA	1 cut(s)	197
AoxI	GGCC	2 cut(s)	190, 467
ApeKI	GCWGC	3 cut(s)	142, 145, 602
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	2 cut(s)	262, 692
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	3 cut(s)	129, 157, 614
BccI	CCATC	2 cut(s)	449, 648
BceAI	ACGGC	2 cut(s)	343, 615
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	155, 231
BfmI	CTRYAG	1 cut(s)	143
BisI	GCNGC	5 cut(s)	143, 146, 342, 603, 647
BlsI	GCNGC	5 cut(s)	144, 147, 343, 604, 648
Bme1390I	CCNGG	2 cut(s)	494, 607
BmrFI	CCNGG	2 cut(s)	494, 607
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	645
BoxI	GACNNNNGTC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	25, 401
BsaWI	WCCGGW	2 cut(s)	197, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	651
BseAI	TCCGGA	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	2 cut(s)	25, 401
BseGI	GGATG	2 cut(s)	289, 460
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	494, 504
BseNI	ACTGG	1 cut(s)	651
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	129, 157, 614
Bsh1236I	CGCG	3 cut(s)	262, 275, 692
Bsh1285I	CGRYCG	2 cut(s)	93, 377
BshFI	GGCC	2 cut(s)	192, 469
BsiEI	CGRYCG	2 cut(s)	93, 377
BsiSI	CCGG	4 cut(s)	198, 304, 470, 493
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	304
BsmI	GAATGC	2 cut(s)	436, 625
BsnI	GGCC	2 cut(s)	192, 469
Bsp13I	TCCGGA	1 cut(s)	197
Bsp143I	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
BspACI	CCGC	6 cut(s)	148, 262, 275, 341, 484, 647
BspANI	GGCC	2 cut(s)	192, 469
BspCNI	CTCAG	2 cut(s)	495, 505
BspEI	TCCGGA	1 cut(s)	197
BspFNI	CGCG	3 cut(s)	262, 275, 692
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	2 cut(s)	631, 669
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	2 cut(s)	25, 401
BssMI	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
BssNAI	GTATAC	1 cut(s)	549
BssT1I	CCWWGG	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	54, 87
BstDEI	CTNAG	3 cut(s)	503, 513, 570
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	289, 460
BstFNI	CGCG	3 cut(s)	262, 275, 692
BstHHI	GCGC	2 cut(s)	262, 692
BstKTI	GATC	7 cut(s)	72, 93, 117, 166, 377, 639, 664
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
BstMCI	CGRYCG	2 cut(s)	93, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	607
BstNSI	RCATGY	2 cut(s)	260, 321
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	492, 605
BstSFI	CTRYAG	1 cut(s)	143
BstUI	CGCG	3 cut(s)	262, 275, 692
BstV1I	GCAGC	3 cut(s)	129, 157, 614
BstV2I	GAAGAC	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	192, 469
BtsCI	GGATG	2 cut(s)	289, 460
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	54, 87
CfoI	GCGC	2 cut(s)	262, 692
CseI	GACGC	1 cut(s)	281
CviAII	CATG	4 cut(s)	167, 257, 318, 536
DdeI	CTNAG	3 cut(s)	503, 513, 570
DpnI	GATC	7 cut(s)	71, 92, 116, 165, 376, 638, 663
DpnII	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
Eco130I	CCWWGG	1 cut(s)	401
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	170, 260, 321, 539
FaiI	YATR	6 cut(s)	168, 258, 319, 510, 537, 549
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	4 cut(s)	166, 256, 317, 535
FauI	CCCGC	1 cut(s)	477
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	5 cut(s)	143, 146, 342, 603, 647
FokI	GGATG	2 cut(s)	296, 467
Fsp4HI	GCNGC	5 cut(s)	143, 146, 342, 603, 647
FspBI	CTAG	2 cut(s)	155, 231
GlaI	GCGC	2 cut(s)	261, 691
GluI	GCNGC	5 cut(s)	143, 146, 342, 603, 647
HaeIII	GGCC	2 cut(s)	192, 469
HapII	CCGG	4 cut(s)	198, 304, 470, 493
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	2 cut(s)	262, 692
Hin1II	CATG	4 cut(s)	170, 260, 321, 539
Hin6I	GCGC	2 cut(s)	260, 690
HinP1I	GCGC	2 cut(s)	260, 690
HinfI	GANTC	6 cut(s)	151, 356, 370, 392, 560, 694
HpaII	CCGG	4 cut(s)	198, 304, 470, 493
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	7 cut(s)	102, 119, 445, 480, 565, 661, 683
Hpy188III	TCNNGA	4 cut(s)	16, 198, 217, 630
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	4 cut(s)	118, 132, 195, 345
HpyCH4V	TGCA	3 cut(s)	36, 145, 436
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	3 cut(s)	503, 513, 570
Hsp92II	CATG	4 cut(s)	170, 260, 321, 539
HspAI	GCGC	2 cut(s)	260, 690
Kpn2I	TCCGGA	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
LmnI	GCTCC	1 cut(s)	684
Lsp1109I	GCAGC	3 cut(s)	129, 157, 614
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	2 cut(s)	155, 231
MaeIII	GTNAC	2 cut(s)	383, 595
MalI	GATC	7 cut(s)	71, 92, 116, 165, 376, 638, 663
MboI	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
MboII	GAAGA	2 cut(s)	73, 124
MfeI	CAATTG	1 cut(s)	699
MluCI	AATT	5 cut(s)	19, 364, 449, 672, 699
MlyI	GAGTC	3 cut(s)	145, 365, 703
MmeI	TCCRAC	1 cut(s)	423
MnlI	CCTC	7 cut(s)	20, 52, 121, 166, 217, 262, 459
MroI	TCCGGA	1 cut(s)	197
MseI	TTAA	3 cut(s)	105, 182, 380
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	4 cut(s)	198, 304, 470, 493
MspR9I	CCNGG	2 cut(s)	494, 607
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	2 cut(s)	436, 625
MvaI	CCWGG	1 cut(s)	607
MvnI	CGCG	3 cut(s)	262, 275, 692
MwoI	GCNNNNNNNGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	494
NdeII	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
NlaIII	CATG	4 cut(s)	170, 260, 321, 539
NmeAIII	GCCGAG	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	383, 595
NspI	RCATGY	2 cut(s)	260, 321
PctI	GAATGC	2 cut(s)	436, 625
PfeI	GAWTC	3 cut(s)	370, 392, 560
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	5 cut(s)	144, 147, 343, 604, 648
Ple19I	CGATCG	2 cut(s)	93, 377
PleI	GAGTC	3 cut(s)	145, 364, 702
PpsI	GAGTC	3 cut(s)	145, 364, 702
PshAI	GACNNNNGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PstI	CTGCAG	1 cut(s)	147
PvuI	CGATCG	2 cut(s)	93, 377
SaqAI	TTAA	3 cut(s)	105, 182, 380
SatI	GCNGC	5 cut(s)	143, 146, 342, 603, 647
Sau3AI	GATC	7 cut(s)	69, 90, 114, 163, 374, 636, 661
SchI	GAGTC	3 cut(s)	145, 365, 703
ScrFI	CCNGG	2 cut(s)	494, 607
SetI	ASST	3 cut(s)	206, 532, 576
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	19, 364, 449, 672, 699
SsiI	CCGC	6 cut(s)	148, 262, 275, 341, 484, 647
SspMI	CTAG	2 cut(s)	155, 231
StyD4I	CCNGG	2 cut(s)	492, 605
StyI	CCWWGG	1 cut(s)	401
TaqI	TCGA	1 cut(s)	373
TasI	AATT	5 cut(s)	19, 364, 449, 672, 699
TauI	GCSGC	2 cut(s)	344, 649
TfiI	GAWTC	3 cut(s)	370, 392, 560
Tru1I	TTAA	3 cut(s)	105, 182, 380
Tru9I	TTAA	3 cut(s)	105, 182, 380
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	2 cut(s)	383, 595
TseI	GCWGC	3 cut(s)	142, 145, 602
Tsp45I	GTSAC	2 cut(s)	383, 595
TspDTI	ATGAA	2 cut(s)	256, 524
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	2 cut(s)	260, 321
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	2 cut(s)	155, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.