Rw1G039110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000753
Physical Location & Seq
Forward (+)
66684787 .. 66686709
1923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039110.1

Sequence Viewer

Length: 810 bp
ATGTCTGACCATGTCCCCAAATGGATGCAGCTGAGAGAGTTCAGACAGGCACAGTGGAGCTCATTAAGGAGGGAAATTCAAGAGCATGCAACAGAATGGTATCCATTCCGCAATAGATTGCCAGCAAATCGGGTCCAGACAATTCTCAGGGACTTGATTAAAAATTCCATCAATAAGCAGAAGCAACATCAATTCGGAGTGCTAAACTTGGACAGCATAATCATAAATGCAGACTCTGAAGCATTTTTAAAATACATACAGTTGGACCAATCCTCCACTGAAGCTAAACAGACGTATAATGAAGCCCTTGCCAGACTGATTGAGACCATATTTCCAGCAGACCTATCATACCCACTTGAGTTCGAGCACTTTAGGCATCTGGCCAGTAGGGCAAGCAATCAGACTGAGCTCGAGCAGTTGTTTTACCACCCAATACTGCTGTCCAGAGTAGAAAGAATACTTTTTGTCCATCATGCCTTCGTCATGATTGGACAAAAATGTATGACAGAGGACAAAACAATATGGAAGAGGCTAGAAGAAATGCAGAAGTTCATGAACATCAAGAACATAATCAGTGGCAAACAGATATTAGAGGCAGTGTACAACGACTTTAAAGGGGACTATAAAACGGATGCAAGGGCAGCTTTCAAATTCTACCGGCACTGCATCCTTCACTACAACGACTATTTGGAAGAGGGACAACTAAAACAACCAGGGGCAAAACACCAAGCGGGTTCACAAACAGCTGCACAGTACCAAGCCAGTTCAACAGCTGCTGCACAGTACCAAGCCAGTTCAACAGCTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

31.49

Weight (kDa)

8.7

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 731
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 3 cut(s) 75, 163, 650
AcuI CTGAAG 2 cut(s) 258, 300
AfaI GTAC 3 cut(s) 602, 755, 785
AgsI TTSAA 4 cut(s) 80, 649, 768, 798
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 8 cut(s) 31, 60, 284, 409, 644, 746, 773, 803
AluI AGCT 8 cut(s) 31, 60, 284, 409, 644, 746, 773, 803
Alw21I GWGCWC 3 cut(s) 62, 369, 411
Alw26I GTCTC 1 cut(s) 317
AlwNI CAGNNNCTG 2 cut(s) 236, 776
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 1 cut(s) 381
ApeKI GCWGC 5 cut(s) 28, 641, 746, 773, 776
ApoI RAATTY 3 cut(s) 75, 163, 650
AspS9I GGNCC 2 cut(s) 133, 265
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 2 cut(s) 133, 265
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 62, 411
Bbv12I GWGCWC 3 cut(s) 62, 369, 411
BbvI GCAGC 5 cut(s) 40, 653, 733, 760, 763
BccI CCATC 2 cut(s) 176, 477
BciT130I CCWGG 1 cut(s) 714
BciVI GTATCC 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 389
BisI GCNGC 5 cut(s) 29, 642, 747, 774, 777
BlsI GCNGC 5 cut(s) 30, 643, 748, 775, 778
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 2 cut(s) 133, 265
BmeT110I CYCGRG 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 133, 265
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 714
BmsI GCATC 4 cut(s) 15, 385, 622, 675
BpuEI CTTGAG 1 cut(s) 377
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 713
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bse118I RCCGGY 1 cut(s) 657
Bse1I ACTGG 3 cut(s) 384, 762, 792
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 1 cut(s) 713
BseGI GGATG 3 cut(s) 30, 637, 666
BseMII CTCAG 3 cut(s) 23, 160, 396
BseNI ACTGG 3 cut(s) 384, 762, 792
BseXI GCAGC 5 cut(s) 40, 653, 733, 760, 763
BsgI GTGCAG 2 cut(s) 732, 762
BshFI GGCC 1 cut(s) 383
BsiHKAI GWGCWC 3 cut(s) 62, 369, 411
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 1 cut(s) 658
BslFI GGGAC 3 cut(s) 164, 632, 711
BsmAI GTCTC 1 cut(s) 317
BsmFI GGGAC 3 cut(s) 164, 632, 711
BsnI GGCC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 62, 369, 411
Bsp1407I TGTACA 1 cut(s) 600
BspACI CCGC 2 cut(s) 109, 731
BspANI GGCC 1 cut(s) 383
BspCNI CTCAG 3 cut(s) 24, 159, 397
BspHI TCATGA 2 cut(s) 483, 552
BspLI GGNNCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 317
BsrFI RCCGGY 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 3 cut(s) 384, 762, 792
BssAI RCCGGY 1 cut(s) 657
BssECI CCNNGG 1 cut(s) 713
Bst2UI CCWGG 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 54, 261, 753, 783
Bst6I CTCTTC 2 cut(s) 521, 687
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 3 cut(s) 87, 123, 394
BstDEI CTNAG 3 cut(s) 32, 146, 405
BstF5I GGATG 3 cut(s) 30, 637, 666
BstMAI GTCTC 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 373, 389, 641
BstNI CCWGG 1 cut(s) 714
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 712
BstV1I GCAGC 5 cut(s) 40, 653, 733, 760, 763
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 383
BtsCI GGATG 3 cut(s) 30, 637, 666
BtsI GCAGTG 2 cut(s) 603, 661
BtsIMutI CAGTG 5 cut(s) 59, 276, 580, 603, 661
Cac8I GCNNGC 3 cut(s) 87, 123, 394
CaiI CAGNNNCTG 2 cut(s) 236, 776
CciI TCATGA 2 cut(s) 483, 552
Cfr10I RCCGGY 1 cut(s) 657
Cfr13I GGNCC 2 cut(s) 133, 265
Csp6I GTAC 3 cut(s) 601, 754, 784
CviAII CATG 5 cut(s) 11, 86, 473, 484, 553
CviQI GTAC 3 cut(s) 601, 754, 784
DdeI CTNAG 3 cut(s) 32, 146, 405
DraI TTTAAA 2 cut(s) 249, 613
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 521, 687
EarI CTCTTC 2 cut(s) 521, 687
Ecl136II GAGCTC 2 cut(s) 60, 409
Eco24I GRGCYC 2 cut(s) 62, 411
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 133, 265
Eco53kI GAGCTC 2 cut(s) 60, 409
Eco57I CTGAAG 2 cut(s) 258, 300
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 2 cut(s) 60, 409
EcoRII CCWGG 1 cut(s) 712
EcoT38I GRGCYC 2 cut(s) 62, 411
FaeI CATG 5 cut(s) 14, 89, 476, 487, 556
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FaqI GGGAC 3 cut(s) 164, 632, 711
FatI CATG 5 cut(s) 10, 85, 472, 483, 552
FauI CCCGC 1 cut(s) 724
Fnu4HI GCNGC 5 cut(s) 29, 642, 747, 774, 777
FokI GGATG 3 cut(s) 37, 644, 653
FriOI GRGCYC 2 cut(s) 62, 411
Fsp4HI GCNGC 5 cut(s) 29, 642, 747, 774, 777
FspBI CTAG 1 cut(s) 533
GluI GCNGC 5 cut(s) 29, 642, 747, 774, 777
HaeIII GGCC 1 cut(s) 383
HapII CCGG 1 cut(s) 658
Hin1II CATG 5 cut(s) 14, 89, 476, 487, 556
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 658
Hpy166II GTNNAC 2 cut(s) 601, 737
Hpy188I TCNGA 5 cut(s) 7, 44, 197, 238, 402
Hpy188III TCNNGA 6 cut(s) 80, 136, 444, 484, 553, 562
Hpy8I GTNNAC 2 cut(s) 601, 737
HpyAV CCTTC 2 cut(s) 487, 680
HpyCH4III ACNGT 4 cut(s) 54, 261, 753, 783
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 8 cut(s) 28, 89, 230, 544, 635, 666, 749, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 373, 389, 641
HpyF3I CTNAG 3 cut(s) 32, 146, 405
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 5 cut(s) 14, 89, 476, 487, 556
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 5 cut(s) 40, 653, 733, 760, 763
LweI GCATC 4 cut(s) 15, 385, 622, 675
MaeI CTAG 1 cut(s) 533
MaeII ACGT 1 cut(s) 293
MboII GAAGA 3 cut(s) 538, 548, 704
MhlI GDGCHC 3 cut(s) 62, 369, 411
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 5 cut(s) 75, 141, 163, 191, 650
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 6 cut(s) 63, 283, 502, 522, 586, 688
Mox20I TGGCCA 1 cut(s) 383
MscI TGGCCA 1 cut(s) 383
MseI TTAA 5 cut(s) 65, 159, 248, 612, 808
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 4 cut(s) 31, 746, 773, 803
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 373, 389, 641
NlaIII CATG 5 cut(s) 14, 89, 476, 487, 556
NlaIV GGNNCC 1 cut(s) 134
NspI RCATGY 1 cut(s) 89
PaeI GCATGC 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 410
PagI TCATGA 2 cut(s) 483, 552
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 5 cut(s) 30, 643, 748, 775, 778
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 2 cut(s) 62, 411
Psp6I CCWGG 1 cut(s) 712
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 2 cut(s) 133, 265
PspXI VCTCGAGB 1 cut(s) 410
PstNI CAGNNNCTG 2 cut(s) 236, 776
PsyI GACNNNGTC 1 cut(s) 11
PvuII CAGCTG 4 cut(s) 31, 746, 773, 803
RsaI GTAC 3 cut(s) 602, 755, 785
RsaNI GTAC 3 cut(s) 601, 754, 784
SacI GAGCTC 2 cut(s) 62, 411
SaqAI TTAA 5 cut(s) 65, 159, 248, 612, 808
SatI GCNGC 5 cut(s) 29, 642, 747, 774, 777
Sau96I GGNCC 2 cut(s) 133, 265
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 3 cut(s) 62, 369, 411
SfaNI GCATC 4 cut(s) 15, 385, 622, 675
Sfr274I CTCGAG 1 cut(s) 410
SinI GGWCC 2 cut(s) 133, 265
SlaI CTCGAG 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 356, 410
SmoI CTYRAG 2 cut(s) 356, 410
SphI GCATGC 1 cut(s) 89
Sse9I AATT 5 cut(s) 75, 141, 163, 191, 650
SsiI CCGC 2 cut(s) 109, 731
SspMI CTAG 1 cut(s) 533
SstI GAGCTC 2 cut(s) 62, 411
StyD4I CCNGG 1 cut(s) 712
TaaI ACNGT 4 cut(s) 54, 261, 753, 783
TaiI ACGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 363, 411
TasI AATT 5 cut(s) 75, 141, 163, 191, 650
TatI WGTACW 1 cut(s) 600
Tru1I TTAA 5 cut(s) 65, 159, 248, 612, 808
Tru9I TTAA 5 cut(s) 65, 159, 248, 612, 808
TscAI CASTG 5 cut(s) 59, 283, 580, 603, 668
TseI GCWGC 5 cut(s) 28, 641, 746, 773, 776
TspDTI ATGAA 3 cut(s) 315, 541, 569
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 5 cut(s) 59, 283, 580, 603, 668
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 2 cut(s) 133, 265
XapI RAATTY 3 cut(s) 75, 163, 650
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 410
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.