RNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RRM_1 | PF00076 | 14 - 80 | 4.4e-07 | RNA recognition motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 3 cut(s) | 58, 909, 959 |
| AccBSI | CCGCTC | 1 cut(s) | 229 |
| AccI | GTMKAC | 1 cut(s) | 48 |
| AccIII | TCCGGA | 1 cut(s) | 1111 |
| AciI | CCGC | 6 cut(s) | 155, 229, 428, 796, 1029, 1069 |
| AclWI | GGATC | 7 cut(s) | 1103, 1271, 1284, 1359, 1372, 1643, 1656 |
| AcoI | YGGCCR | 1 cut(s) | 1845 |
| AcsI | RAATTY | 1 cut(s) | 764 |
| AcyI | GRCGYC | 3 cut(s) | 59, 910, 960 |
| AdeI | CACNNNGTG | 1 cut(s) | 1088 |
| AfaI | GTAC | 4 cut(s) | 218, 289, 1241, 1534 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 291, 934, 1502, 1644 |
| AflIII | ACRYGT | 1 cut(s) | 597 |
| AgsI | TTSAA | 8 cut(s) | 88, 244, 565, 769, 776, 1501, 1528, 1862 |
| AleI | CACNNNNGTG | 1 cut(s) | 1063 |
| AluBI | AGCT | 5 cut(s) | 267, 496, 685, 745, 1135 |
| AluI | AGCT | 5 cut(s) | 267, 496, 685, 745, 1135 |
| Alw26I | GTCTC | 7 cut(s) | 8, 68, 962, 1109, 1404, 1588, 1834 |
| AlwI | GGATC | 7 cut(s) | 1103, 1271, 1284, 1359, 1372, 1643, 1656 |
| Ama87I | CYCGRG | 2 cut(s) | 1150, 1879 |
| Aor13HI | TCCGGA | 1 cut(s) | 1111 |
| AoxI | GGCC | 3 cut(s) | 619, 1070, 1845 |
| ApeKI | GCWGC | 3 cut(s) | 4, 119, 682 |
| ApoI | RAATTY | 1 cut(s) | 764 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1214, 1246 |
| AspLEI | GCGC | 6 cut(s) | 61, 300, 881, 912, 962, 1771 |
| AspS9I | GGNCC | 5 cut(s) | 620, 1214, 1660, 1749, 1817 |
| AsuC2I | CCSGG | 4 cut(s) | 917, 934, 947, 1388 |
| AsuHPI | GGTGA | 4 cut(s) | 236, 679, 1195, 1496 |
| AsuII | TTCGAA | 1 cut(s) | 759 |
| AvaI | CYCGRG | 2 cut(s) | 1150, 1879 |
| AvaII | GGWCC | 4 cut(s) | 1214, 1660, 1749, 1817 |
| AxyI | CCTNAGG | 1 cut(s) | 699 |
| BalI | TGGCCA | 1 cut(s) | 1847 |
| BamHI | GGATCC | 3 cut(s) | 1276, 1364, 1648 |
| BanI | GGYRCC | 3 cut(s) | 58, 909, 959 |
| BauI | CACGAG | 1 cut(s) | 1254 |
| BbvI | GCAGC | 3 cut(s) | 16, 106, 694 |
| BccI | CCATC | 4 cut(s) | 61, 272, 341, 1475 |
| BceAI | ACGGC | 2 cut(s) | 205, 1021 |
| BciVI | GTATCC | 1 cut(s) | 986 |
| BcnI | CCSGG | 4 cut(s) | 917, 934, 947, 1388 |
| BcoDI | GTCTC | 7 cut(s) | 8, 68, 962, 1109, 1404, 1588, 1834 |
| BfaI | CTAG | 6 cut(s) | 158, 497, 624, 1086, 1163, 1403 |
| BfoI | RGCGCY | 5 cut(s) | 62, 301, 913, 963, 1772 |
| BfuI | GTATCC | 1 cut(s) | 986 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1777 |
| BglII | AGATCT | 2 cut(s) | 706, 1371 |
| BisI | GCNGC | 6 cut(s) | 5, 120, 155, 683, 1030, 1070 |
| BlsI | GCNGC | 6 cut(s) | 6, 121, 156, 684, 1031, 1071 |
| Bme1390I | CCNGG | 4 cut(s) | 917, 934, 947, 1388 |
| Bme18I | GGWCC | 4 cut(s) | 1214, 1660, 1749, 1817 |
| BmeT110I | CYCGRG | 2 cut(s) | 1150, 1879 |
| BmgT120I | GGNCC | 5 cut(s) | 620, 1214, 1660, 1749, 1817 |
| BmrFI | CCNGG | 4 cut(s) | 917, 934, 947, 1388 |
| BmsI | GCATC | 6 cut(s) | 184, 222, 352, 852, 1455, 1632 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1693 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 20, 52, 308, 340 |
| BpmI | CTGGAG | 1 cut(s) | 1120 |
| Bpu14I | TTCGAA | 1 cut(s) | 759 |
| BpuEI | CTTGAG | 2 cut(s) | 32, 1266 |
| BpuMI | CCSGG | 4 cut(s) | 917, 934, 947, 1388 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1376 |
| BsaHI | GRCGYC | 3 cut(s) | 59, 910, 960 |
| BsaI | GGTCTC | 1 cut(s) | 68 |
| BsaJI | CCNNGG | 6 cut(s) | 123, 220, 366, 933, 955, 1151 |
| BsaWI | WCCGGW | 2 cut(s) | 284, 1111 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 377, 407, 774, 804 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 291, 934, 1502, 1644 |
| Bse118I | RCCGGY | 1 cut(s) | 1610 |
| Bse1I | ACTGG | 2 cut(s) | 900, 1909 |
| Bse21I | CCTNAGG | 1 cut(s) | 699 |
| Bse3DI | GCAATG | 2 cut(s) | 830, 874 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1376 |
| BseAI | TCCGGA | 1 cut(s) | 1111 |
| BseDI | CCNNGG | 6 cut(s) | 123, 220, 366, 933, 955, 1151 |
| BseGI | GGATG | 8 cut(s) | 76, 237, 352, 367, 589, 792, 1606, 1623 |
| BseJI | GATNNNNATC | 1 cut(s) | 1376 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 291, 934, 1502, 1644 |
| BseMI | GCAATG | 2 cut(s) | 830, 874 |
| BseMII | CTCAG | 3 cut(s) | 189, 254, 917 |
| BseNI | ACTGG | 2 cut(s) | 900, 1909 |
| BseRI | GAGGAG | 1 cut(s) | 795 |
| BseXI | GCAGC | 3 cut(s) | 16, 106, 694 |
| BseYI | CCCAGC | 2 cut(s) | 267, 300 |
| BshFI | GGCC | 3 cut(s) | 621, 1072, 1847 |
| BshNI | GGYRCC | 3 cut(s) | 58, 909, 959 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1150, 1879 |
| BsiSI | CCGG | 8 cut(s) | 285, 916, 933, 947, 1112, 1274, 1388, 1611 |
| BslFI | GGGAC | 4 cut(s) | 284, 929, 1311, 1762 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 291, 934, 1502, 1644 |
| BsmAI | GTCTC | 7 cut(s) | 8, 68, 962, 1109, 1404, 1588, 1834 |
| BsmBI | CGTCTC | 2 cut(s) | 8, 962 |
| BsmFI | GGGAC | 4 cut(s) | 284, 929, 1311, 1762 |
| BsnI | GGCC | 3 cut(s) | 621, 1072, 1847 |
| Bso31I | GGTCTC | 1 cut(s) | 68 |
| BsoBI | CYCGRG | 2 cut(s) | 1150, 1879 |
| Bsp119I | TTCGAA | 1 cut(s) | 759 |
| Bsp13I | TCCGGA | 1 cut(s) | 1111 |
| Bsp1407I | TGTACA | 1 cut(s) | 1239 |
| Bsp19I | CCATGG | 1 cut(s) | 220 |
| BspACI | CCGC | 6 cut(s) | 155, 229, 428, 796, 1029, 1069 |
| BspANI | GGCC | 3 cut(s) | 621, 1072, 1847 |
| BspCNI | CTCAG | 3 cut(s) | 190, 255, 916 |
| BspEI | TCCGGA | 1 cut(s) | 1111 |
| BspHI | TCATGA | 3 cut(s) | 1219, 1564, 1630 |
| BspPI | GGATC | 7 cut(s) | 1103, 1271, 1284, 1359, 1372, 1643, 1656 |
| BspT104I | TTCGAA | 1 cut(s) | 759 |
| BspT107I | GGYRCC | 3 cut(s) | 58, 909, 959 |
| BspTNI | GGTCTC | 1 cut(s) | 68 |
| BsrBI | CCGCTC | 1 cut(s) | 229 |
| BsrDI | GCAATG | 2 cut(s) | 830, 874 |
| BsrFI | RCCGGY | 1 cut(s) | 1610 |
| BsrGI | TGTACA | 1 cut(s) | 1239 |
| BsrI | ACTGG | 2 cut(s) | 900, 1909 |
| BssAI | RCCGGY | 1 cut(s) | 1610 |
| BssECI | CCNNGG | 6 cut(s) | 123, 220, 366, 933, 955, 1151 |
| BssNI | GRCGYC | 3 cut(s) | 59, 910, 960 |
| BssSI | CACGAG | 1 cut(s) | 1254 |
| BssT1I | CCWWGG | 2 cut(s) | 220, 366 |
| Bst2BI | CACGAG | 1 cut(s) | 1254 |
| Bst4CI | ACNGT | 4 cut(s) | 127, 642, 810, 1692 |
| Bst6I | CTCTTC | 1 cut(s) | 89 |
| BstACI | GRCGYC | 3 cut(s) | 59, 910, 960 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 876 |
| BstAUI | TGTACA | 1 cut(s) | 1239 |
| BstBI | TTCGAA | 1 cut(s) | 759 |
| BstC8I | GCNNGC | 4 cut(s) | 57, 872, 1027, 1767 |
| BstDEI | CTNAG | 4 cut(s) | 198, 263, 699, 903 |
| BstDSI | CCRYGG | 2 cut(s) | 123, 220 |
| BstF5I | GGATG | 8 cut(s) | 76, 237, 352, 367, 589, 792, 1606, 1623 |
| BstH2I | RGCGCY | 5 cut(s) | 62, 301, 913, 963, 1772 |
| BstHHI | GCGC | 6 cut(s) | 61, 300, 881, 912, 962, 1771 |
| BstMAI | GTCTC | 7 cut(s) | 8, 68, 962, 1109, 1404, 1588, 1834 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 139, 876, 1038, 1620, 1777 |
| BstNSI | RCATGY | 2 cut(s) | 580, 601 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1693 |
| BstSCI | CCNGG | 4 cut(s) | 915, 932, 945, 1386 |
| BstV1I | GCAGC | 3 cut(s) | 16, 106, 694 |
| BstX2I | RGATCY | 5 cut(s) | 706, 1276, 1364, 1371, 1648 |
| BstYI | RGATCY | 5 cut(s) | 706, 1276, 1364, 1371, 1648 |
| Bsu36I | CCTNAGG | 1 cut(s) | 699 |
| BsuI | GTATCC | 1 cut(s) | 986 |
| BsuRI | GGCC | 3 cut(s) | 621, 1072, 1847 |
| BtgI | CCRYGG | 2 cut(s) | 123, 220 |
| BtgZI | GCGATG | 1 cut(s) | 207 |
| BtsCI | GGATG | 8 cut(s) | 76, 237, 352, 367, 589, 792, 1606, 1623 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 911 |
| Cac8I | GCNNGC | 4 cut(s) | 57, 872, 1027, 1767 |
| CciI | TCATGA | 3 cut(s) | 1219, 1564, 1630 |
| CfoI | GCGC | 6 cut(s) | 61, 300, 881, 912, 962, 1771 |
| Cfr10I | RCCGGY | 1 cut(s) | 1610 |
| Cfr13I | GGNCC | 5 cut(s) | 620, 1214, 1660, 1749, 1817 |
| Csp6I | GTAC | 4 cut(s) | 217, 288, 1240, 1533 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 96, 131, 902, 937, 1687, 1722 |
| CviQI | GTAC | 4 cut(s) | 217, 288, 1240, 1533 |
| DdeI | CTNAG | 4 cut(s) | 198, 263, 699, 903 |
| DinI | GGCGCC | 3 cut(s) | 60, 911, 961 |
| DraIII | CACNNNGTG | 1 cut(s) | 1088 |
| EaeI | YGGCCR | 1 cut(s) | 1845 |
| Eam1104I | CTCTTC | 1 cut(s) | 89 |
| EarI | CTCTTC | 1 cut(s) | 89 |
| Eco130I | CCWWGG | 2 cut(s) | 220, 366 |
| Eco31I | GGTCTC | 1 cut(s) | 68 |
| Eco47I | GGWCC | 4 cut(s) | 1214, 1660, 1749, 1817 |
| Eco81I | CCTNAGG | 1 cut(s) | 699 |
| Eco88I | CYCGRG | 2 cut(s) | 1150, 1879 |
| EcoRI | GAATTC | 1 cut(s) | 764 |
| EcoT14I | CCWWGG | 2 cut(s) | 220, 366 |
| EgeI | GGCGCC | 3 cut(s) | 60, 911, 961 |
| EheI | GGCGCC | 3 cut(s) | 60, 911, 961 |
| ErhI | CCWWGG | 2 cut(s) | 220, 366 |
| Esp3I | CGTCTC | 2 cut(s) | 8, 962 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1718, 1750 |
| FaqI | GGGAC | 4 cut(s) | 284, 929, 1311, 1762 |
| FauI | CCCGC | 1 cut(s) | 435 |
| FblI | GTMKAC | 1 cut(s) | 48 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 120, 155, 683, 1030, 1070 |
| FokI | GGATG | 8 cut(s) | 83, 244, 359, 374, 576, 779, 1610, 1613 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 120, 155, 683, 1030, 1070 |
| FspBI | CTAG | 6 cut(s) | 158, 497, 624, 1086, 1163, 1403 |
| GlaI | GCGC | 6 cut(s) | 60, 299, 880, 911, 961, 1770 |
| GluI | GCNGC | 6 cut(s) | 5, 120, 155, 683, 1030, 1070 |
| GsaI | CCCAGC | 2 cut(s) | 271, 304 |
| GsuI | CTGGAG | 1 cut(s) | 1120 |
| HaeII | RGCGCY | 5 cut(s) | 62, 301, 913, 963, 1772 |
| HaeIII | GGCC | 3 cut(s) | 621, 1072, 1847 |
| HapII | CCGG | 8 cut(s) | 285, 916, 933, 947, 1112, 1274, 1388, 1611 |
| HhaI | GCGC | 6 cut(s) | 61, 300, 881, 912, 962, 1771 |
| Hin1I | GRCGYC | 3 cut(s) | 59, 910, 960 |
| Hin6I | GCGC | 6 cut(s) | 59, 298, 879, 910, 960, 1769 |
| HinP1I | GCGC | 6 cut(s) | 59, 298, 879, 910, 960, 1769 |
| HincII | GTYRAC | 2 cut(s) | 49, 553 |
| HindII | GTYRAC | 2 cut(s) | 49, 553 |
| HindIII | AAGCTT | 1 cut(s) | 1133 |
| HinfI | GANTC | 7 cut(s) | 31, 212, 255, 392, 899, 1333, 1397 |
| HpaII | CCGG | 8 cut(s) | 285, 916, 933, 947, 1112, 1274, 1388, 1611 |
| HphI | GGTGA | 4 cut(s) | 236, 679, 1195, 1496 |
| Hpy188I | TCNGA | 1 cut(s) | 264 |
| Hpy99I | CGWCG | 1 cut(s) | 53 |
| HpyAV | CCTTC | 5 cut(s) | 508, 733, 1479, 1507, 1802 |
| HpyCH4III | ACNGT | 4 cut(s) | 127, 642, 810, 1692 |
| HpyCH4IV | ACGT | 3 cut(s) | 789, 1413, 1434 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 133, 506, 823, 870, 1159, 1294, 1311 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 139, 876, 1038, 1620, 1777 |
| HpyF3I | CTNAG | 4 cut(s) | 198, 263, 699, 903 |
| HpySE526I | ACGT | 3 cut(s) | 789, 1413, 1434 |
| Hsp92I | GRCGYC | 3 cut(s) | 59, 910, 960 |
| HspAI | GCGC | 6 cut(s) | 59, 298, 879, 910, 960, 1769 |
| KasI | GGCGCC | 3 cut(s) | 58, 909, 959 |
| Kpn2I | TCCGGA | 1 cut(s) | 1111 |
| LmnI | GCTCC | 4 cut(s) | 41, 742, 930, 1013 |
| Lsp1109I | GCAGC | 3 cut(s) | 16, 106, 694 |
| LweI | GCATC | 6 cut(s) | 184, 222, 352, 852, 1455, 1632 |
| MaeI | CTAG | 6 cut(s) | 158, 497, 624, 1086, 1163, 1403 |
| MaeII | ACGT | 3 cut(s) | 789, 1413, 1434 |
| MaeIII | GTNAC | 5 cut(s) | 98, 406, 785, 833, 1664 |
| MbiI | CCGCTC | 1 cut(s) | 229 |
| MboII | GAAGA | 4 cut(s) | 76, 742, 773, 1012 |
| MfeI | CAATTG | 1 cut(s) | 1306 |
| MflI | RGATCY | 5 cut(s) | 706, 1276, 1364, 1371, 1648 |
| MlsI | TGGCCA | 1 cut(s) | 1847 |
| MluCI | AATT | 4 cut(s) | 244, 478, 764, 1306 |
| MluNI | TGGCCA | 1 cut(s) | 1847 |
| Mly113I | GGCGCC | 3 cut(s) | 59, 910, 960 |
| MlyI | GAGTC | 3 cut(s) | 386, 1342, 1406 |
| MmeI | TCCRAC | 2 cut(s) | 661, 1342 |
| Mox20I | TGGCCA | 1 cut(s) | 1847 |
| MroI | TCCGGA | 1 cut(s) | 1111 |
| MscI | TGGCCA | 1 cut(s) | 1847 |
| MseI | TTAA | 6 cut(s) | 521, 672, 1206, 1338, 1376, 1674 |
| MslI | CAYNNNNRTG | 2 cut(s) | 192, 1063 |
| Msp20I | TGGCCA | 1 cut(s) | 1847 |
| MspI | CCGG | 8 cut(s) | 285, 916, 933, 947, 1112, 1274, 1388, 1611 |
| MspR9I | CCNGG | 4 cut(s) | 917, 934, 947, 1388 |
| MunI | CAATTG | 1 cut(s) | 1306 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 139, 876, 1038, 1620, 1777 |
| NarI | GGCGCC | 3 cut(s) | 59, 910, 960 |
| NciI | CCSGG | 4 cut(s) | 917, 934, 947, 1388 |
| NcoI | CCATGG | 1 cut(s) | 220 |
| NmeAIII | GCCGAG | 1 cut(s) | 980 |
| NmuCI | GTSAC | 2 cut(s) | 98, 833 |
| NspI | RCATGY | 2 cut(s) | 580, 601 |
| NspV | TTCGAA | 1 cut(s) | 759 |
| OliI | CACNNNNGTG | 1 cut(s) | 1063 |
| PagI | TCATGA | 3 cut(s) | 1219, 1564, 1630 |
| PciI | ACATGT | 1 cut(s) | 597 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 852, 1388 |
| PfeI | GAWTC | 4 cut(s) | 31, 212, 255, 899 |
| PfoI | TCCNGGA | 1 cut(s) | 945 |
| PkrI | GCNGC | 6 cut(s) | 6, 121, 156, 684, 1031, 1071 |
| PleI | GAGTC | 3 cut(s) | 386, 1341, 1405 |
| PluTI | GGCGCC | 3 cut(s) | 62, 913, 963 |
| PpsI | GAGTC | 3 cut(s) | 386, 1341, 1405 |
| PscI | ACATGT | 1 cut(s) | 597 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1693 |
| PspFI | CCCAGC | 2 cut(s) | 267, 300 |
| PspPI | GGNCC | 5 cut(s) | 620, 1214, 1660, 1749, 1817 |
| PsuI | RGATCY | 5 cut(s) | 706, 1276, 1364, 1371, 1648 |
| RsaI | GTAC | 4 cut(s) | 218, 289, 1241, 1534 |
| RsaNI | GTAC | 4 cut(s) | 217, 288, 1240, 1533 |
| RseI | CAYNNNNRTG | 2 cut(s) | 192, 1063 |
| SalI | GTCGAC | 1 cut(s) | 47 |
| SaqAI | TTAA | 6 cut(s) | 521, 672, 1206, 1338, 1376, 1674 |
| SatI | GCNGC | 6 cut(s) | 5, 120, 155, 683, 1030, 1070 |
| Sau96I | GGNCC | 5 cut(s) | 620, 1214, 1660, 1749, 1817 |
| SchI | GAGTC | 3 cut(s) | 386, 1342, 1406 |
| ScrFI | CCNGG | 4 cut(s) | 917, 934, 947, 1388 |
| SfaNI | GCATC | 6 cut(s) | 184, 222, 352, 852, 1455, 1632 |
| SfoI | GGCGCC | 3 cut(s) | 60, 911, 961 |
| SfuI | TTCGAA | 1 cut(s) | 759 |
| SinI | GGWCC | 4 cut(s) | 1214, 1660, 1749, 1817 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 192, 1063 |
| SmlI | CTYRAG | 2 cut(s) | 11, 1281 |
| SmoI | CTYRAG | 2 cut(s) | 11, 1281 |
| Sse9I | AATT | 4 cut(s) | 244, 478, 764, 1306 |
| SsiI | CCGC | 6 cut(s) | 155, 229, 428, 796, 1029, 1069 |
| SspDI | GGCGCC | 3 cut(s) | 58, 909, 959 |
| SspMI | CTAG | 6 cut(s) | 158, 497, 624, 1086, 1163, 1403 |
| StyD4I | CCNGG | 4 cut(s) | 915, 932, 945, 1386 |
| StyI | CCWWGG | 2 cut(s) | 220, 366 |
| TaaI | ACNGT | 4 cut(s) | 127, 642, 810, 1692 |
| TaiI | ACGT | 3 cut(s) | 792, 1416, 1437 |
| TasI | AATT | 4 cut(s) | 244, 478, 764, 1306 |
| TatI | WGTACW | 1 cut(s) | 1239 |
| TauI | GCSGC | 3 cut(s) | 157, 1032, 1072 |
| TfiI | GAWTC | 4 cut(s) | 31, 212, 255, 899 |
| Tru1I | TTAA | 6 cut(s) | 521, 672, 1206, 1338, 1376, 1674 |
| Tru9I | TTAA | 6 cut(s) | 521, 672, 1206, 1338, 1376, 1674 |
| TscAI | CASTG | 2 cut(s) | 280, 911 |
| TseFI | GTSAC | 2 cut(s) | 98, 833 |
| TseI | GCWGC | 3 cut(s) | 4, 119, 682 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 833 |
| TspDTI | ATGAA | 4 cut(s) | 369, 743, 1647, 1821 |
| TspGWI | ACGGA | 3 cut(s) | 587, 1203, 1652 |
| TspRI | CASTG | 2 cut(s) | 280, 911 |
| VpaK11BI | GGWCC | 4 cut(s) | 1214, 1660, 1749, 1817 |
| XapI | RAATTY | 1 cut(s) | 764 |
| XceI | RCATGY | 2 cut(s) | 580, 601 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 644, 892 |
| XmiI | GTMKAC | 1 cut(s) | 48 |
| XspI | CTAG | 6 cut(s) | 158, 497, 624, 1086, 1163, 1403 |