FvH4_7g31670

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000753
Physical Location & Seq
Reverse (-)
22846471 .. 22849905
3435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31670.t2

Sequence Viewer

Length: 1392 bp
ATGGAAACGGATGTTGACAAGCGTTTGAAGCTTACGGACATGCCTCTCACTCATCCTAACATGTATCAACAAGGATGTTCCGGCCCTAATCTTACAAACCAACAGAACCAACCAGACCCGATGCAGTGGGATGGTGGTTGTGGTGCTGGATATGTTAATGACCAAGTTCCTAAGGGAGCTCTGGAAATGGTTTCCTCGATGAAGGAGGAGAAGGAGCTGTATCTTGGTTTCGAAGAAGTCAACTATCGAAGAAGTTGTTACGTCTTCCGCACCATCAAACTGTCTGAGTTATTGGTTTGCTCTTGTAACTTCAATATGGATGCTCGTGAAATTACCGGGTGCGTCAATTGTGCCCCCAAAACCAAACAGAAATCGCAGTTGCGCCAGCGGGCTTGGCTCTTCACCGGGGAGAAAGTCCCGGAAAGCTGCGGCAGCAAAGAGGTGAAAATCCCAACGCGTATGGGTTCCTGTGCCTACGGCTCCCGAATCATCTTCGCCGGTGGCTTGGTTCCCCGACCAGATGAGGAAACAACAATGACGGCAGCCCATGTGCCTTGTGGAGATGTGTATAGTTTTGAGCCGGAGTCTAGTGTGTGGAAAAGGCTTGATTGGAGTATCCCGAAGGCGAAACCAGAGCCCTTGCTTTTTGAGGTGAACGGAAATCTCTATTGTCTTGCCGGTGCTCCTCATGAACCCTCTTTCGAGGTATACGATAGCAGTTCTCGTGAATGTTTGTTTCTGCCGCATCCTCCAGATAGCATTCCGGAACTAGGCAATTGGCATGGTTTTGTACATTACAGGTCTTTTAATAGATTGGCTTGTGCTATTGTTGGATCCAAGATCTTGATCTCGAGCATGGGGAACGTGCCAGCCTATTACATTCCCATTATCTGCTTCGACGTGAATGACAAGAAACAGAAATGGAGAATGATGACTTCCTTGTTCGATGGTAAGCCTTTTCCTTTCGATGGCAGGGCATTAGTCTTGGACTTGGATGATGGTACACATGATAAGGTCATGTTCTCTTTTCGTAATGAGGGTGAGATATCTGTCTCTCGATTAGTAGTGGATGATGATGGCGATATAAGCATCTCTTACGAAGGATGGTTGGGGATTTTTCGCTTGCTCTGTACCTTCGTGTGTAAACATTCTCCACCGTCATACACCTTTGTCGATCTTGGAGATAAAACTGTTGCCTTTGTTGTGTGTGCAAACATGTTTTCTGGGGTAAAGGCTCTTGGGAAGGTGCGTGTTGTTGTCATAGTCATTTGCTATGATGTGTTGGGCTCAAAAAGAATCACAAGTGAGATCCTGGCCACTCGCATCTTTGAGTACAATTGTCATTCCTCGGGCGTCATGTATACTAAGTTTACCAGTGGCTTTGTGCTCTAA

Protein Analysis

464

Amino Acids

51.89

Weight (kDa)

6.04

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 12 - 77 3.4e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 708, 1361
AccII CGCG 1 cut(s) 457
AccIII TCCGGA 1 cut(s) 763
AciI CCGC 4 cut(s) 268, 388, 429, 743
AclWI GGATC 3 cut(s) 828, 841, 1303
AcoI YGGCCR 1 cut(s) 1314
AcyI GRCGYC 1 cut(s) 1353
AfaI GTAC 4 cut(s) 792, 1003, 1132, 1334
AfiI CCNNNNNNNGG 2 cut(s) 770, 968
AflIII ACRYGT 3 cut(s) 60, 455, 1215
AgsI TTSAA 2 cut(s) 28, 313
AjiI CACGTC 1 cut(s) 901
AjnI CCWGG 1 cut(s) 1311
AluBI AGCT 4 cut(s) 31, 179, 217, 426
AluI AGCT 4 cut(s) 31, 179, 217, 426
Alw21I GWGCWC 3 cut(s) 181, 685, 1389
Alw26I GTCTC 1 cut(s) 1057
AlwI GGATC 3 cut(s) 828, 841, 1303
Ama87I CYCGRG 2 cut(s) 850, 1348
Aor13HI TCCGGA 1 cut(s) 763
AoxI GGCC 2 cut(s) 82, 1314
ApeKI GCWGC 3 cut(s) 426, 432, 542
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 83
AsuC2I CCSGG 3 cut(s) 337, 406, 419
AsuHPI GGTGA 4 cut(s) 394, 454, 664, 1052
AsuII TTCGAA 1 cut(s) 231
AvaI CYCGRG 2 cut(s) 850, 1348
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 355
BalI TGGCCA 1 cut(s) 1316
BamHI GGATCC 1 cut(s) 833
BanII GRGCYC 3 cut(s) 181, 639, 1289
BauI CACGAG 2 cut(s) 324, 723
BbsI GAAGAC 1 cut(s) 256
Bbv12I GWGCWC 3 cut(s) 181, 685, 1389
BbvI GCAGC 3 cut(s) 413, 444, 554
BccI CCATC 7 cut(s) 125, 281, 941, 962, 992, 1070, 1098
BceAI ACGGC 2 cut(s) 493, 555
BciT130I CCWGG 1 cut(s) 1313
BciVI GTATCC 1 cut(s) 626
BcnI CCSGG 3 cut(s) 337, 406, 419
BcoDI GTCTC 1 cut(s) 1057
BfaI CTAG 2 cut(s) 588, 770
BfuI GTATCC 1 cut(s) 626
BglII AGATCT 1 cut(s) 840
BisI GCNGC 5 cut(s) 427, 430, 433, 543, 743
BlsI GCNGC 5 cut(s) 428, 431, 434, 544, 744
Bme1390I CCNGG 4 cut(s) 337, 406, 419, 1313
BmeT110I CYCGRG 2 cut(s) 850, 1348
BmgBI CACGTC 1 cut(s) 901
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 4 cut(s) 466, 481, 510, 835
BmrFI CCNGG 4 cut(s) 337, 406, 419, 1313
BmsI GCATC 5 cut(s) 111, 310, 754, 1098, 1332
BpiI GAAGAC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 231
BpuMI CCSGG 3 cut(s) 337, 406, 419
BsaBI GATNNNNATC 1 cut(s) 845
BsaHI GRCGYC 1 cut(s) 1353
BsaJI CCNNGG 2 cut(s) 405, 1347
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 968
Bse118I RCCGGY 2 cut(s) 497, 677
Bse1I ACTGG 1 cut(s) 1374
Bse21I CCTNAGG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 845
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 1 cut(s) 1313
BseDI CCNNGG 2 cut(s) 405, 1347
BseGI GGATG 9 cut(s) 16, 52, 80, 136, 325, 745, 1000, 1075, 1109
BseJI GATNNNNATC 1 cut(s) 845
BseLI CCNNNNNNNGG 2 cut(s) 770, 968
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 1374
BseRI GAGGAG 2 cut(s) 221, 675
BseSI GKGCMC 1 cut(s) 355
BseXI GCAGC 3 cut(s) 413, 444, 554
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 2 cut(s) 84, 1316
BsiHKAI GWGCWC 3 cut(s) 181, 685, 1389
BsiHKCI CYCGRG 2 cut(s) 850, 1348
BsiSI CCGG 8 cut(s) 81, 336, 405, 419, 498, 581, 678, 764
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 770, 968
BsmAI GTCTC 1 cut(s) 1057
BsmFI GGGAC 1 cut(s) 401
BsmI GAATGC 1 cut(s) 759
BsnI GGCC 2 cut(s) 84, 1316
BsoBI CYCGRG 2 cut(s) 850, 1348
Bsp119I TTCGAA 1 cut(s) 231
Bsp1286I GDGCHC 6 cut(s) 181, 355, 639, 685, 1289, 1389
Bsp13I TCCGGA 1 cut(s) 763
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 5 cut(s) 833, 840, 846, 1174, 1308
BspACI CCGC 4 cut(s) 268, 388, 429, 743
BspANI GGCC 2 cut(s) 84, 1316
BspCNI CTCAG 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 1 cut(s) 457
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 4 cut(s) 466, 481, 510, 835
BspPI GGATC 3 cut(s) 828, 841, 1303
BspQI GCTCTTC 1 cut(s) 404
BspT104I TTCGAA 1 cut(s) 231
BsrFI RCCGGY 2 cut(s) 497, 677
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 1 cut(s) 1374
BssAI RCCGGY 2 cut(s) 497, 677
BssECI CCNNGG 2 cut(s) 405, 1347
BssMI GATC 5 cut(s) 833, 840, 846, 1174, 1308
BssNAI GTATAC 2 cut(s) 709, 1362
BssNI GRCGYC 1 cut(s) 1353
BssSI CACGAG 2 cut(s) 324, 723
Bst1107I GTATAC 2 cut(s) 709, 1362
Bst2BI CACGAG 2 cut(s) 324, 723
Bst2UI CCWGG 1 cut(s) 1313
Bst4CI ACNGT 3 cut(s) 282, 1158, 1192
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 1353
BstAUI TGTACA 1 cut(s) 790
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 386, 390, 870, 1124
BstDEI CTNAG 3 cut(s) 171, 285, 1365
BstF5I GGATG 9 cut(s) 16, 52, 80, 136, 325, 745, 1000, 1075, 1109
BstFNI CGCG 1 cut(s) 457
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 5 cut(s) 836, 843, 849, 1177, 1311
BstMAI GTCTC 1 cut(s) 1057
BstMBI GATC 5 cut(s) 833, 840, 846, 1174, 1308
BstMWI GCNNNNNNNGC 4 cut(s) 28, 394, 432, 1086
BstNI CCWGG 1 cut(s) 1313
BstNSI RCATGY 3 cut(s) 43, 64, 1219
BstSCI CCNGG 4 cut(s) 335, 404, 417, 1311
BstSLI GKGCMC 1 cut(s) 355
BstUI CGCG 1 cut(s) 457
BstV1I GCAGC 3 cut(s) 413, 444, 554
BstV2I GAAGAC 1 cut(s) 256
BstX2I RGATCY 3 cut(s) 833, 840, 1308
BstYI RGATCY 3 cut(s) 833, 840, 1308
BstZ17I GTATAC 2 cut(s) 709, 1362
Bsu36I CCTNAGG 1 cut(s) 171
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 84, 1316
BtrI CACGTC 1 cut(s) 901
BtsCI GGATG 9 cut(s) 16, 52, 80, 136, 325, 745, 1000, 1075, 1109
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 2 cut(s) 131, 1381
Cac8I GCNNGC 4 cut(s) 386, 390, 870, 1124
CciI TCATGA 1 cut(s) 688
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 2 cut(s) 497, 677
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 2 cut(s) 331, 1342
Csp6I GTAC 4 cut(s) 791, 1002, 1131, 1333
CviQI GTAC 4 cut(s) 791, 1002, 1131, 1333
DdeI CTNAG 3 cut(s) 171, 285, 1365
DpnI GATC 5 cut(s) 835, 842, 848, 1176, 1310
DpnII GATC 5 cut(s) 833, 840, 846, 1174, 1308
EaeI YGGCCR 1 cut(s) 1314
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 3 cut(s) 181, 639, 1289
Eco32I GATATC 1 cut(s) 1047
Eco53kI GAGCTC 1 cut(s) 179
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 850, 1348
EcoICRI GAGCTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 1311
EcoRV GATATC 1 cut(s) 1047
EcoT38I GRGCYC 3 cut(s) 181, 639, 1289
FalI AAGNNNNNCTT 2 cut(s) 1078, 1110
FaqI GGGAC 1 cut(s) 401
FauI CCCGC 1 cut(s) 381
FblI GTMKAC 2 cut(s) 708, 1361
Fnu4HI GCNGC 5 cut(s) 427, 430, 433, 543, 743
FokI GGATG 9 cut(s) 23, 39, 87, 143, 332, 732, 1007, 1082, 1116
FriOI GRGCYC 3 cut(s) 181, 639, 1289
Fsp4HI GCNGC 5 cut(s) 427, 430, 433, 543, 743
FspBI CTAG 2 cut(s) 588, 770
GlaI GCGC 1 cut(s) 383
GluI GCNGC 5 cut(s) 427, 430, 433, 543, 743
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 2 cut(s) 84, 1316
HapII CCGG 8 cut(s) 81, 336, 405, 419, 498, 581, 678, 764
HgaI GACGC 2 cut(s) 331, 1342
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 1 cut(s) 1353
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HincII GTYRAC 2 cut(s) 16, 241
HindII GTYRAC 2 cut(s) 16, 241
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 486, 584, 1296
HpaII CCGG 8 cut(s) 81, 336, 405, 419, 498, 581, 678, 764
HphI GGTGA 4 cut(s) 394, 454, 664, 1052
Hpy166II GTNNAC 8 cut(s) 16, 241, 655, 709, 1004, 1145, 1362, 1371
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 8 cut(s) 16, 241, 655, 709, 1004, 1145, 1362, 1371
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 6 cut(s) 196, 205, 616, 1094, 1144, 1237
HpyCH4III ACNGT 3 cut(s) 282, 1158, 1192
HpyCH4IV ACGT 3 cut(s) 261, 864, 900
HpyCH4V TGCA 2 cut(s) 124, 1211
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 394, 432, 1086
HpyF3I CTNAG 3 cut(s) 171, 285, 1365
HpySE526I ACGT 3 cut(s) 261, 864, 900
Hsp92I GRCGYC 1 cut(s) 1353
HspAI GCGC 1 cut(s) 382
Kpn2I TCCGGA 1 cut(s) 763
Kzo9I GATC 5 cut(s) 833, 840, 846, 1174, 1308
LguI GCTCTTC 1 cut(s) 404
LmnI GCTCC 4 cut(s) 176, 214, 485, 688
Lsp1109I GCAGC 3 cut(s) 413, 444, 554
LweI GCATC 5 cut(s) 111, 310, 754, 1098, 1332
MaeI CTAG 2 cut(s) 588, 770
MaeII ACGT 3 cut(s) 261, 864, 900
MaeIII GTNAC 2 cut(s) 257, 305
MalI GATC 5 cut(s) 835, 842, 848, 1176, 1310
MboI GATC 5 cut(s) 833, 840, 846, 1174, 1308
MboII GAAGA 5 cut(s) 245, 256, 261, 391, 484
MfeI CAATTG 3 cut(s) 346, 775, 1336
MflI RGATCY 3 cut(s) 833, 840, 1308
MhlI GDGCHC 6 cut(s) 181, 355, 639, 685, 1289, 1389
MlsI TGGCCA 1 cut(s) 1316
MluCI AATT 4 cut(s) 330, 346, 775, 1336
MluI ACGCGT 1 cut(s) 455
MluNI TGGCCA 1 cut(s) 1316
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 811
Mox20I TGGCCA 1 cut(s) 1316
MroI TCCGGA 1 cut(s) 763
MscI TGGCCA 1 cut(s) 1316
MseI TTAA 2 cut(s) 156, 807
Msp20I TGGCCA 1 cut(s) 1316
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 8 cut(s) 81, 336, 405, 419, 498, 581, 678, 764
MspR9I CCNGG 4 cut(s) 337, 406, 419, 1313
MunI CAATTG 3 cut(s) 346, 775, 1336
Mva1269I GAATGC 1 cut(s) 759
MvaI CCWGG 1 cut(s) 1313
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 4 cut(s) 28, 394, 432, 1086
NciI CCSGG 3 cut(s) 337, 406, 419
NdeII GATC 5 cut(s) 833, 840, 846, 1174, 1308
NlaIV GGNNCC 4 cut(s) 466, 481, 510, 835
NspI RCATGY 3 cut(s) 43, 64, 1219
NspV TTCGAA 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 850
PagI TCATGA 1 cut(s) 688
PciI ACATGT 2 cut(s) 60, 1215
PciSI GCTCTTC 1 cut(s) 404
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PctI GAATGC 1 cut(s) 759
PfeI GAWTC 2 cut(s) 486, 1296
PfoI TCCNGGA 1 cut(s) 417
PkrI GCNGC 5 cut(s) 428, 431, 434, 544, 744
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PscI ACATGT 2 cut(s) 60, 1215
Psp124BI GAGCTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 1311
PspGI CCWGG 1 cut(s) 1311
PspN4I GGNNCC 4 cut(s) 466, 481, 510, 835
PspPI GGNCC 1 cut(s) 83
PsuI RGATCY 3 cut(s) 833, 840, 1308
RsaI GTAC 4 cut(s) 792, 1003, 1132, 1334
RsaNI GTAC 4 cut(s) 791, 1002, 1131, 1333
SacI GAGCTC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 156, 807
SatI GCNGC 5 cut(s) 427, 430, 433, 543, 743
Sau3AI GATC 5 cut(s) 833, 840, 846, 1174, 1308
Sau96I GGNCC 1 cut(s) 83
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 4 cut(s) 337, 406, 419, 1313
SduI GDGCHC 6 cut(s) 181, 355, 639, 685, 1289, 1389
SfaNI GCATC 5 cut(s) 111, 310, 754, 1098, 1332
Sfr274I CTCGAG 1 cut(s) 850
SfuI TTCGAA 1 cut(s) 231
SgrAI CRCCGGYG 1 cut(s) 497
SlaI CTCGAG 1 cut(s) 850
SmlI CTYRAG 1 cut(s) 850
SmoI CTYRAG 1 cut(s) 850
Sse9I AATT 4 cut(s) 330, 346, 775, 1336
SsiI CCGC 4 cut(s) 268, 388, 429, 743
SspMI CTAG 2 cut(s) 588, 770
SstI GAGCTC 1 cut(s) 181
StyD4I CCNGG 4 cut(s) 335, 404, 417, 1311
TaaI ACNGT 3 cut(s) 282, 1158, 1192
TaiI ACGT 3 cut(s) 264, 867, 903
TasI AATT 4 cut(s) 330, 346, 775, 1336
TatI WGTACW 2 cut(s) 790, 1332
TauI GCSGC 2 cut(s) 432, 745
TfiI GAWTC 2 cut(s) 486, 1296
Tru1I TTAA 2 cut(s) 156, 807
Tru9I TTAA 2 cut(s) 156, 807
TscAI CASTG 2 cut(s) 131, 1381
TseI GCWGC 3 cut(s) 426, 432, 542
TspDTI ATGAA 2 cut(s) 215, 705
TspGWI ACGGA 3 cut(s) 23, 50, 672
TspRI CASTG 2 cut(s) 131, 1381
XceI RCATGY 3 cut(s) 43, 64, 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 850
XmiI GTMKAC 2 cut(s) 708, 1361
XspI CTAG 2 cut(s) 588, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.