Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004623.1

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

27519 .. 28439

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004623.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atggagcacacgacggcagccaattccaaagccgatgagatccgatccctacgcgtcgagggcttgctgccagagatggatgcgaaatacctctatggctgcttcagtgatcacggccaggttgtagctgccactgttttgcataatgtgagaactggttttgttgagtttacttctcggagctgggctgagatgatcttgaagtcctacaatggtctcgggatgccaaactaccctcagatataccgcctgaaatgggatatggatgctaccggtatgatgtggcgcttggattatgcttacgagcgttgttcgtactttggttttaatgatgcaggtgaagaattgaacgccaacaaagcgctcttgagatacaagcacttgatacctgctgtaaatgaaaagccagctgctgctggtggtcagcaacatcaggaaggcgtgtctggtttaacatatgagatagttgaagggattcgctacaacaactggtacgacgacaggtttctgtatctatgtatggaggaattgtgtaaggaaaaagacggttgttacgtcatccgcaccctcaagttgtcgaacttattgtcatgctcttgcaagtttgacgaaaagattgggagtataatcacctgccgctattgcgccgactgcaacgtgccatttgaattgcaaaagcaggcttggctatgcaccaaggactccggcaaccggaaaagtccgaggcttatgggatgcacttcttgtttcagcggaattatgttcgccggcggcctggaccagtcaccagatcaaactcgagctccttactatgtgccgagtcaacaatgttattattttcagccgagaaatatttgcaacgataatcccgaggcgtccgtactatctcaaaagtgggaaaccggaggccctgctggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

306

Amino Acids

34.7

Weight (kDa)

5.81

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	326, 641
Acc36I	ACCTGC	3 cut(s)	326, 397, 641
AccII	CGCG	1 cut(s)	54
AciI	CCGC	5 cut(s)	247, 562, 637, 753, 771
AclWI	GGATC	2 cut(s)	34, 39
AcoI	YGGCCR	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	3 cut(s)	317, 494, 882
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	256, 711
AflIII	ACRYGT	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	202, 349, 470, 668
AjnI	CCWGG	2 cut(s)	117, 774
AluBI	AGCT	4 cut(s)	128, 183, 410, 803
AluI	AGCT	4 cut(s)	128, 183, 410, 803
Alw21I	GWGCWC	2 cut(s)	9, 805
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	34, 39
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	3 cut(s)	218, 798, 869
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	3 cut(s)	115, 772, 907
ApeKI	GCWGC	6 cut(s)	17, 67, 99, 128, 410, 413
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
AsiGI	ACCGGT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	474
AspLEI	GCGC	3 cut(s)	288, 364, 647
AspS9I	GGNCC	2 cut(s)	778, 908
AsuHPI	GGTGA	3 cut(s)	350, 622, 777
AvaI	CYCGRG	3 cut(s)	218, 798, 869
AvaII	GGWCC	1 cut(s)	778
BanII	GRGCYC	1 cut(s)	805
Bbv12I	GWGCWC	2 cut(s)	9, 805
BbvI	GCAGC	6 cut(s)	29, 54, 86, 115, 397, 400
BccI	CCATC	1 cut(s)	70
BceAI	ACGGC	2 cut(s)	30, 130
BciT130I	CCWGG	2 cut(s)	119, 776
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	289, 365
BfuAI	ACCTGC	3 cut(s)	326, 397, 641
BisI	GCNGC	8 cut(s)	18, 68, 100, 129, 411, 414, 637, 772
BlsI	GCNGC	8 cut(s)	19, 69, 101, 130, 412, 415, 638, 773
Bme1390I	CCNGG	2 cut(s)	119, 776
Bme18I	GGWCC	1 cut(s)	778
BmeT110I	CYCGRG	3 cut(s)	218, 798, 869
BmgT120I	GGNCC	2 cut(s)	778, 908
BmrFI	CCNGG	2 cut(s)	119, 776
BmsI	GCATC	5 cut(s)	70, 213, 256, 322, 725
BpuEI	CTTGAG	2 cut(s)	388, 554
BsaHI	GRCGYC	1 cut(s)	875
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	696, 722, 870
BsaWI	WCCGGW	3 cut(s)	272, 711, 902
BsaXI	ACNNNNNCTCC	4 cut(s)	515, 545, 787, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 711
Bse118I	RCCGGY	2 cut(s)	272, 767
Bse1I	ACTGG	3 cut(s)	160, 494, 781
BseBI	CCWGG	2 cut(s)	119, 776
BseDI	CCNNGG	3 cut(s)	696, 722, 870
BseGI	GGATG	5 cut(s)	85, 228, 271, 558, 740
BseLI	CCNNNNNNNGG	2 cut(s)	256, 711
BseMII	CTCAG	2 cut(s)	180, 251
BseNI	ACTGG	3 cut(s)	160, 494, 781
BseXI	GCAGC	6 cut(s)	29, 54, 86, 115, 397, 400
BseYI	CCCAGC	1 cut(s)	183
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	117, 774, 909
BshTI	ACCGGT	1 cut(s)	272
BsiHKAI	GWGCWC	2 cut(s)	9, 805
BsiHKCI	CYCGRG	3 cut(s)	218, 798, 869
BsiSI	CCGG	5 cut(s)	273, 705, 712, 768, 903
BslI	CCNNNNNNNGG	2 cut(s)	256, 711
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	117, 774, 909
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	3 cut(s)	218, 798, 869
Bsp1286I	GDGCHC	2 cut(s)	9, 805
Bsp143I	GATC	5 cut(s)	39, 44, 109, 195, 790
BspACI	CCGC	5 cut(s)	247, 562, 637, 753, 771
BspANI	GGCC	3 cut(s)	117, 774, 909
BspCNI	CTCAG	2 cut(s)	181, 250
BspFNI	CGCG	1 cut(s)	54
BspMI	ACCTGC	3 cut(s)	326, 397, 641
BspPI	GGATC	2 cut(s)	34, 39
BspTNI	GGTCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	272, 767
BsrI	ACTGG	3 cut(s)	160, 494, 781
BssAI	RCCGGY	2 cut(s)	272, 767
BssECI	CCNNGG	3 cut(s)	696, 722, 870
BssMI	GATC	5 cut(s)	39, 44, 109, 195, 790
BssNI	GRCGYC	1 cut(s)	875
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	2 cut(s)	119, 776
Bst4CI	ACNGT	2 cut(s)	136, 548
BstACI	GRCGYC	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	65, 408, 681, 769
BstDEI	CTNAG	2 cut(s)	189, 237
BstF5I	GGATG	5 cut(s)	85, 228, 271, 558, 740
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	289, 365
BstHHI	GCGC	3 cut(s)	288, 364, 647
BstKTI	GATC	5 cut(s)	42, 47, 112, 198, 793
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	5 cut(s)	39, 44, 109, 195, 790
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 359, 642, 651, 685
BstNI	CCWGG	2 cut(s)	119, 776
BstSCI	CCNGG	2 cut(s)	117, 774
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	29, 54, 86, 115, 397, 400
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	117, 774, 909
BtsCI	GGATG	5 cut(s)	85, 228, 271, 558, 740
BtsIMutI	CAGTG	2 cut(s)	112, 132
BveI	ACCTGC	3 cut(s)	326, 397, 641
Cac8I	GCNNGC	4 cut(s)	65, 408, 681, 769
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	3 cut(s)	288, 364, 647
Cfr10I	RCCGGY	2 cut(s)	272, 767
Cfr13I	GGNCC	2 cut(s)	778, 908
CseI	GACGC	2 cut(s)	43, 864
Csp6I	GTAC	3 cut(s)	316, 493, 881
CspAI	ACCGGT	1 cut(s)	272
CviAII	CATG	1 cut(s)	591
CviQI	GTAC	3 cut(s)	316, 493, 881
DdeI	CTNAG	2 cut(s)	189, 237
DpnI	GATC	5 cut(s)	41, 46, 111, 197, 792
DpnII	GATC	5 cut(s)	39, 44, 109, 195, 790
EaeI	YGGCCR	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	805
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	778
Eco47III	AGCGCT	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	803
Eco57I	CTGAAG	1 cut(s)	88
Eco88I	CYCGRG	3 cut(s)	218, 798, 869
EcoICRI	GAGCTC	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	908
EcoRII	CCWGG	2 cut(s)	117, 774
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	1 cut(s)	805
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	1 cut(s)	594
FatI	CATG	1 cut(s)	590
FauNDI	CATATG	1 cut(s)	457
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	8 cut(s)	18, 68, 100, 129, 411, 414, 637, 772
FokI	GGATG	5 cut(s)	92, 235, 278, 545, 747
FriOI	GRGCYC	1 cut(s)	805
Fsp4HI	GCNGC	8 cut(s)	18, 68, 100, 129, 411, 414, 637, 772
GlaI	GCGC	3 cut(s)	287, 363, 646
GluI	GCNGC	8 cut(s)	18, 68, 100, 129, 411, 414, 637, 772
GsaI	CCCAGC	1 cut(s)	187
HaeII	RGCGCY	2 cut(s)	289, 365
HaeIII	GGCC	3 cut(s)	117, 774, 909
HapII	CCGG	5 cut(s)	273, 705, 712, 768, 903
HgaI	GACGC	2 cut(s)	43, 864
HhaI	GCGC	3 cut(s)	288, 364, 647
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	1 cut(s)	594
Hin6I	GCGC	3 cut(s)	286, 362, 645
HinP1I	GCGC	3 cut(s)	286, 362, 645
HincII	GTYRAC	1 cut(s)	824
HindII	GTYRAC	1 cut(s)	824
HinfI	GANTC	3 cut(s)	475, 701, 820
HpaII	CCGG	5 cut(s)	273, 705, 712, 768, 903
HphI	GGTGA	3 cut(s)	350, 622, 777
Hpy166II	GTNNAC	2 cut(s)	171, 824
Hpy188I	TCNGA	4 cut(s)	44, 180, 240, 723
Hpy188III	TCNNGA	5 cut(s)	199, 220, 367, 434, 869
Hpy8I	GTNNAC	2 cut(s)	171, 824
Hpy99I	CGWCG	3 cut(s)	16, 59, 500
HpyAV	CCTTC	2 cut(s)	431, 464
HpyCH4III	ACNGT	2 cut(s)	136, 548
HpyCH4IV	ACGT	2 cut(s)	555, 657
HpyCH4V	TGCA	8 cut(s)	142, 335, 600, 654, 673, 693, 738, 858
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 359, 642, 651, 685
HpyF3I	CTNAG	2 cut(s)	189, 237
HpySE526I	ACGT	2 cut(s)	555, 657
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	1 cut(s)	594
HspAI	GCGC	3 cut(s)	286, 362, 645
KroI	GCCGGC	1 cut(s)	767
KroNI	GCCGGC	1 cut(s)	769
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	39, 44, 109, 195, 790
LmnI	GCTCC	3 cut(s)	4, 180, 808
Lsp1109I	GCAGC	6 cut(s)	29, 54, 86, 115, 397, 400
LweI	GCATC	5 cut(s)	70, 213, 256, 322, 725
MaeII	ACGT	2 cut(s)	555, 657
MaeIII	GTNAC	2 cut(s)	551, 783
MalI	GATC	5 cut(s)	41, 46, 111, 197, 792
MboI	GATC	5 cut(s)	39, 44, 109, 195, 790
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	9, 805
MluCI	AATT	5 cut(s)	22, 344, 527, 668, 756
MluI	ACGCGT	1 cut(s)	52
MlyI	GAGTC	2 cut(s)	695, 829
MnlI	CCTC	8 cut(s)	52, 101, 246, 517, 578, 717, 865, 899
MreI	CGCCGGCG	1 cut(s)	767
MroNI	GCCGGC	1 cut(s)	767
MroXI	GAANNNNTTC	1 cut(s)	474
MseI	TTAA	3 cut(s)	327, 452, 919
MspA1I	CMGCKG	2 cut(s)	410, 753
MspI	CCGG	5 cut(s)	273, 705, 712, 768, 903
MspR9I	CCNGG	2 cut(s)	119, 776
MvaI	CCWGG	2 cut(s)	119, 776
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	60, 359, 642, 651, 685
NaeI	GCCGGC	1 cut(s)	769
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	5 cut(s)	39, 44, 109, 195, 790
NgoMIV	GCCGGC	1 cut(s)	767
NlaIII	CATG	1 cut(s)	594
NmeAIII	GCCGAG	2 cut(s)	843, 870
NmuCI	GTSAC	1 cut(s)	783
PaeR7I	CTCGAG	1 cut(s)	798
PaqCI	CACCTGC	2 cut(s)	326, 641
PcsI	WCGNNNNNNNCGW	2 cut(s)	552, 867
PdiI	GCCGGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	8 cut(s)	19, 69, 101, 130, 412, 415, 638, 773
PleI	GAGTC	2 cut(s)	695, 828
PpsI	GAGTC	2 cut(s)	695, 828
Psp124BI	GAGCTC	1 cut(s)	805
Psp6I	CCWGG	2 cut(s)	117, 774
PspFI	CCCAGC	1 cut(s)	183
PspGI	CCWGG	2 cut(s)	117, 774
PspPI	GGNCC	2 cut(s)	778, 908
PspXI	VCTCGAGB	1 cut(s)	798
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	3 cut(s)	317, 494, 882
RsaNI	GTAC	3 cut(s)	316, 493, 881
SacI	GAGCTC	1 cut(s)	805
SaqAI	TTAA	3 cut(s)	327, 452, 919
SatI	GCNGC	8 cut(s)	18, 68, 100, 129, 411, 414, 637, 772
Sau3AI	GATC	5 cut(s)	39, 44, 109, 195, 790
Sau96I	GGNCC	2 cut(s)	778, 908
SchI	GAGTC	2 cut(s)	695, 829
ScrFI	CCNGG	2 cut(s)	119, 776
SduI	GDGCHC	2 cut(s)	9, 805
SfaNI	GCATC	5 cut(s)	70, 213, 256, 322, 725
Sfr274I	CTCGAG	1 cut(s)	798
SgrAI	CRCCGGYG	1 cut(s)	767
SinI	GGWCC	1 cut(s)	778
SlaI	CTCGAG	1 cut(s)	798
SmlI	CTYRAG	3 cut(s)	367, 569, 798
SmoI	CTYRAG	3 cut(s)	367, 569, 798
Sse9I	AATT	5 cut(s)	22, 344, 527, 668, 756
SsiI	CCGC	5 cut(s)	247, 562, 637, 753, 771
SspI	AATATT	1 cut(s)	853
SstI	GAGCTC	1 cut(s)	805
StyD4I	CCNGG	2 cut(s)	117, 774
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	136, 548
TaiI	ACGT	2 cut(s)	558, 660
TaqI	TCGA	3 cut(s)	57, 578, 799
TasI	AATT	5 cut(s)	22, 344, 527, 668, 756
TauI	GCSGC	2 cut(s)	639, 774
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	3 cut(s)	327, 452, 919
Tru9I	TTAA	3 cut(s)	327, 452, 919
TscAI	CASTG	2 cut(s)	112, 139
TseFI	GTSAC	1 cut(s)	783
TseI	GCWGC	6 cut(s)	17, 67, 99, 128, 410, 413
Tsp45I	GTSAC	1 cut(s)	783
TspDTI	ATGAA	1 cut(s)	414
TspGWI	ACGGA	1 cut(s)	868
TspRI	CASTG	2 cut(s)	112, 139
VpaK11BI	GGWCC	1 cut(s)	778
XhoI	CTCGAG	1 cut(s)	798
XmnI	GAANNNNTTC	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.