Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004623.1

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

26729 .. 27328

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004623.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgggcaccaagcttttggtctcgagcaagatccctggttcagattcccctcaatttcccgtttgttgctttgacgttgaggaaaaaaagtggacagaggtcactaccttgttcaatggtaagccttttcccttccgacgcagggctttggtggtcgacttggaggatggtacccatgataaggtcatgttttacttcaataattattttgctataagagtctgccgattagtagttaatgaggatgatggtagtattaagaactcaccgcaccaatctctggggattgataccctcatgactagcttattggaaattaccattcaaaatcagtcaatggtgaaaatgtcgtgggattttgttgatctaggaaataaaaaagtctgctttgttttgtcctcgagcctcccgaaaggcagagacgacgacgagtgtttctgtcatcgccagaccttgcgtcttcttatcttggtaattcaatttcaagttttggaatcaggagatttctccttcaagttcctggctactcgcacctttgaataccagggccatttccctcgcatccggcaccccaagctgcagggttgctttctgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

199

Amino Acids

22.93

Weight (kDa)

7.6

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	3 cut(s)	5, 170, 567
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	3 cut(s)	142, 181, 280
AgsI	TTSAA	7 cut(s)	115, 199, 326, 479, 485, 514, 539
AhdI	GACNNNNNGTC	1 cut(s)	456
AjnI	CCWGG	3 cut(s)	34, 519, 543
AluBI	AGCT	3 cut(s)	13, 306, 577
AluI	AGCT	3 cut(s)	13, 306, 577
Alw26I	GTCTC	2 cut(s)	25, 414
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	2 cut(s)	22, 400
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	577
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	258, 352
AvaI	CYCGRG	2 cut(s)	22, 400
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	3 cut(s)	5, 170, 567
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	161, 242
BciT130I	CCWGG	3 cut(s)	36, 521, 545
BcoDI	GTCTC	2 cut(s)	25, 414
BfaI	CTAG	2 cut(s)	303, 368
BfmI	CTRYAG	1 cut(s)	578
BisI	GCNGC	1 cut(s)	578
BlsI	GCNGC	1 cut(s)	579
Bme1390I	CCNGG	3 cut(s)	36, 521, 545
BmeRI	GACNNNNNGTC	1 cut(s)	456
BmeT110I	CYCGRG	2 cut(s)	22, 400
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	7, 172, 569
BmrFI	CCNGG	3 cut(s)	36, 521, 545
BmsI	GCATC	1 cut(s)	570
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	34, 544
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 181, 280
BseBI	CCWGG	3 cut(s)	36, 521, 545
BseDI	CCNNGG	2 cut(s)	34, 544
BseGI	GGATG	3 cut(s)	172, 250, 561
BseLI	CCNNNNNNNGG	3 cut(s)	142, 181, 280
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	564
BshFI	GGCC	1 cut(s)	549
BshNI	GGYRCC	3 cut(s)	5, 170, 567
BsiHKCI	CYCGRG	2 cut(s)	22, 400
BsiSI	CCGG	1 cut(s)	565
BslI	CCNNNNNNNGG	3 cut(s)	142, 181, 280
BsmAI	GTCTC	2 cut(s)	25, 414
BsmBI	CGTCTC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	2 cut(s)	22, 400
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	30, 364
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	297
BspLI	GGNNCC	3 cut(s)	7, 172, 569
BspMAI	CTGCAG	1 cut(s)	582
BspPI	GGATC	1 cut(s)	25
BspT107I	GGYRCC	3 cut(s)	5, 170, 567
BspTNI	GGTCTC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	34, 544
BssMI	GATC	2 cut(s)	30, 364
Bst2UI	CCWGG	3 cut(s)	36, 521, 545
BstF5I	GGATG	3 cut(s)	172, 250, 561
BstKTI	GATC	2 cut(s)	33, 367
BstMAI	GTCTC	2 cut(s)	25, 414
BstMBI	GATC	2 cut(s)	30, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	574
BstNI	CCWGG	3 cut(s)	36, 521, 545
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	34, 519, 543
BstSFI	CTRYAG	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	564
BstV2I	GAAGAC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	549
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	172, 250, 561
CciI	TCATGA	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	2 cut(s)	147, 446
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	176, 187, 298
CviJI	RGCY	8 cut(s)	13, 124, 146, 306, 405, 524, 549, 577
CviKI_1	RGCY	8 cut(s)	13, 124, 146, 306, 405, 524, 549, 577
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	2 cut(s)	32, 366
DpnII	GATC	2 cut(s)	30, 364
DriI	GACNNNNNGTC	1 cut(s)	456
Eam1105I	GACNNNNNGTC	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	25
Eco88I	CYCGRG	2 cut(s)	22, 400
EcoRII	CCWGG	3 cut(s)	34, 519, 543
Esp3I	CGTCTC	1 cut(s)	414
FaeI	CATG	3 cut(s)	179, 190, 301
FaiI	YATR	4 cut(s)	177, 188, 215, 299
FatI	CATG	3 cut(s)	175, 186, 297
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	578
FokI	GGATG	3 cut(s)	179, 257, 548
Fsp4HI	GCNGC	1 cut(s)	578
FspBI	CTAG	2 cut(s)	303, 368
GluI	GCNGC	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	565
HgaI	GACGC	2 cut(s)	147, 446
Hin1II	CATG	3 cut(s)	179, 190, 301
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	3 cut(s)	44, 219, 494
HpaII	CCGG	1 cut(s)	565
HphI	GGTGA	2 cut(s)	258, 352
Hpy166II	GTNNAC	2 cut(s)	93, 157
Hpy188I	TCNGA	2 cut(s)	43, 137
Hpy188III	TCNNGA	4 cut(s)	22, 298, 409, 498
Hpy8I	GTNNAC	2 cut(s)	93, 157
Hpy99I	CGWCG	3 cut(s)	141, 428, 431
HpyAV	CCTTC	2 cut(s)	142, 520
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	1 cut(s)	574
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	179, 190, 301
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	30, 364
Lsp1109I	GCAGC	1 cut(s)	564
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	2 cut(s)	303, 368
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	32, 366
MboI	GATC	2 cut(s)	30, 364
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	53, 202, 315, 474, 479
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	9 cut(s)	60, 73, 91, 157, 235, 305, 409, 416, 567
MseI	TTAA	3 cut(s)	237, 258, 598
MspI	CCGG	1 cut(s)	565
MspR9I	CCNGG	3 cut(s)	36, 521, 545
MvaI	CCWGG	3 cut(s)	36, 521, 545
MwoI	GCNNNNNNNGC	1 cut(s)	574
NdeII	GATC	2 cut(s)	30, 364
NlaIII	CATG	3 cut(s)	179, 190, 301
NlaIV	GGNNCC	3 cut(s)	7, 172, 569
NmuCI	GTSAC	1 cut(s)	100
PaeR7I	CTCGAG	2 cut(s)	22, 400
PagI	TCATGA	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	44, 494
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	579
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	98
Psp6I	CCWGG	3 cut(s)	34, 519, 543
PspGI	CCWGG	3 cut(s)	34, 519, 543
PspN4I	GGNNCC	3 cut(s)	7, 172, 569
PspPI	GGNCC	1 cut(s)	547
PspXI	VCTCGAGB	1 cut(s)	400
PstI	CTGCAG	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	237, 258, 598
SatI	GCNGC	1 cut(s)	578
Sau3AI	GATC	2 cut(s)	30, 364
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	3 cut(s)	36, 521, 545
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	15, 78, 102, 110, 186, 308, 455, 536, 579
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	578
Sfr274I	CTCGAG	2 cut(s)	22, 400
SlaI	CTCGAG	2 cut(s)	22, 400
SmlI	CTYRAG	2 cut(s)	22, 400
SmoI	CTYRAG	2 cut(s)	22, 400
Sse9I	AATT	5 cut(s)	53, 202, 315, 474, 479
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	2 cut(s)	303, 368
StyD4I	CCNGG	3 cut(s)	34, 519, 543
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	23, 156, 401
TasI	AATT	5 cut(s)	53, 202, 315, 474, 479
TfiI	GAWTC	2 cut(s)	44, 494
Tru1I	TTAA	3 cut(s)	237, 258, 598
Tru9I	TTAA	3 cut(s)	237, 258, 598
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	577
Tsp45I	GTSAC	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	280
XhoI	CTCGAG	2 cut(s)	22, 400
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	2 cut(s)	303, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.