FvH4_7g31210

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000753
Physical Location & Seq
Forward (+)
22584310 .. 22586191
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31210.t1

Sequence Viewer

Length: 1176 bp
ATGCAGCAACTTGAGACGACAGCCGATGAGATTCGCTCCATACGGGTCGACGGGCTGGCGCCGATGATGGATGAGACCTATCTCTTCAACTGCTTCTGTGACAACGCAAAGGTTTTGGCTGCAACGGTTTTACGTAATCGGCGAACAGGAGTGCCGCTAGATTATGGTTTTGTGGAGTTTGCTTCTCACGGCGATGCTGAGTTTGTCTTGGATTCGTACCATGGTGAGCGGATGCCCAACTTCAATTATGAGAGATTCTGTCTGAGCTGGGACACTGATGGTTCCGGTACAAGCTGGCGCTGGGATTATACTTACGAGAGTTGCTCTTTCTTTGGTTATTACGAGGATGGTAATGAAATGGATGCCAAGGCATTGATTACGCACTACATGGACTCCATACCCTCTGTTGTTACTACAAAGCGAGCCTACCCGCAATCTGCCTACCCAAATACTTGTGGAGTTTCAGGGGAGGCTTTTCCAAATTACACAGAAAACCAGCTAGATAGTACAAAGTTGAATGGTTCAAGTCCTGCTGCCTATATGGAAACAGATGGTGACAAGCGTTTGAAGCTTGTGGACATGCCTCTCACTCATCCTAACATGTATCAACAAGGATATGTCGGCCCCAGTCTTACAATCCAACAGAACCAACCAGACCCGATGCAGTGCAATGTTGGTTGTGGTGCTGGATATGTTAATGACCAAGTTCCTAAGGGAGCTCTGGAAATGGTTTCCTCGATGAAGGAGGAGAAGGAGCTGTATCTAGGTTTCGAAGAAGTCAACTATAGAAGAAGTTGTTACGTCTTCCGCACCATCAAACTGTCAGAGTTATTGCAATGCTCTTGTCACTTTAGCATCGAAACTTGTGAAATAACCAAGTGCAAGCATTGCGCCCCCAAAATCAAACTGGAATCTCAGTGGCGCCTGCGGGCTTGGCTCCACACCGGGGAAAAAGTCCGTGAAAGCTGCGGCGCCAAAGAGACGAATATCCCAGATGGTATGATTTGCTGTTCCTACGGCTCCCAAATCATCTTCGCCGGCGGCTTGGGGAAGATGGGGAAACACCAGAGTGGCCTCCCCTTGTGCCTAGTGGACAGGTCTGGAGTTTTGATCCGGAGACTACAGTTTGGGAAAAGCTTGATTGGAGTTTCCCGAGGGTGCATCTTGATTCCTTGA

Protein Analysis

392

Amino Acids

43.93

Weight (kDa)

5.59

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 14 - 80 2.5e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 58, 921, 971
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 1113
AciI CCGC 7 cut(s) 155, 229, 431, 808, 928, 969, 1041
AclWI GGATC 1 cut(s) 1105
AcyI GRCGYC 3 cut(s) 59, 922, 972
AfaI GTAC 3 cut(s) 218, 289, 508
AfiI CCNNNNNNNGG 1 cut(s) 946
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 5 cut(s) 88, 244, 517, 525, 568
AleI CACNNNNGTG 1 cut(s) 1068
AluBI AGCT 8 cut(s) 267, 294, 499, 571, 719, 757, 966, 1137
AluI AGCT 8 cut(s) 267, 294, 499, 571, 719, 757, 966, 1137
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 4 cut(s) 8, 68, 974, 1111
AlwI GGATC 1 cut(s) 1105
Ama87I CYCGRG 1 cut(s) 1152
Aor13HI TCCGGA 1 cut(s) 1113
AoxI GGCC 2 cut(s) 622, 1072
ApeKI GCWGC 4 cut(s) 4, 119, 533, 966
AspLEI GCGC 5 cut(s) 61, 300, 893, 924, 974
AspS9I GGNCC 1 cut(s) 623
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 2 cut(s) 236, 566
AsuII TTCGAA 1 cut(s) 771
AvaI CYCGRG 1 cut(s) 1152
AxyI CCTNAGG 1 cut(s) 711
BanI GGYRCC 3 cut(s) 58, 921, 971
BanII GRGCYC 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 796
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 4 cut(s) 16, 106, 520, 953
BccI CCATC 7 cut(s) 61, 272, 341, 545, 821, 989, 1048
BceAI ACGGC 2 cut(s) 205, 1033
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 4 cut(s) 8, 68, 974, 1111
BfaI CTAG 4 cut(s) 158, 500, 764, 1088
BfmI CTRYAG 2 cut(s) 784, 1121
BfoI RGCGCY 4 cut(s) 62, 301, 925, 975
BisI GCNGC 7 cut(s) 5, 120, 155, 534, 967, 970, 1042
BlsI GCNGC 7 cut(s) 6, 121, 156, 535, 968, 971, 1043
Bme1390I CCNGG 1 cut(s) 946
BmeT110I CYCGRG 1 cut(s) 1152
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 7 cut(s) 60, 283, 625, 923, 938, 973, 1021
BmrFI CCNGG 1 cut(s) 946
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 6 cut(s) 184, 222, 352, 651, 864, 1170
BmuI ACTGGG 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 796
BplI GAGNNNNNCTC 4 cut(s) 20, 52, 308, 340
BpmI CTGGAG 1 cut(s) 1122
Bpu14I TTCGAA 1 cut(s) 771
BpuEI CTTGAG 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 946
BsaAI YACGTR 1 cut(s) 134
BsaHI GRCGYC 3 cut(s) 59, 922, 972
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 220, 366, 945, 1153
BsaWI WCCGGW 2 cut(s) 284, 1113
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 946
Bse118I RCCGGY 1 cut(s) 1037
Bse1I ACTGG 2 cut(s) 627, 912
Bse21I CCTNAGG 1 cut(s) 711
Bse3DI GCAATG 3 cut(s) 676, 842, 886
BseAI TCCGGA 1 cut(s) 1113
BseDI CCNNGG 4 cut(s) 220, 366, 945, 1153
BseGI GGATG 5 cut(s) 76, 237, 352, 367, 592
BseLI CCNNNNNNNGG 1 cut(s) 946
BseMI GCAATG 3 cut(s) 676, 842, 886
BseMII CTCAG 3 cut(s) 189, 254, 929
BseNI ACTGG 2 cut(s) 627, 912
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 4 cut(s) 16, 106, 520, 953
BseYI CCCAGC 2 cut(s) 267, 300
BshFI GGCC 2 cut(s) 624, 1074
BshNI GGYRCC 3 cut(s) 58, 921, 971
BsiHKAI GWGCWC 1 cut(s) 721
BsiHKCI CYCGRG 1 cut(s) 1152
BsiSI CCGG 4 cut(s) 285, 945, 1038, 1114
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 946
BsmAI GTCTC 4 cut(s) 8, 68, 974, 1111
BsmBI CGTCTC 2 cut(s) 8, 974
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 2 cut(s) 624, 1074
Bso31I GGTCTC 1 cut(s) 68
BsoBI CYCGRG 1 cut(s) 1152
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 1113
Bsp143I GATC 1 cut(s) 1110
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 7 cut(s) 155, 229, 431, 808, 928, 969, 1041
BspANI GGCC 2 cut(s) 624, 1074
BspCNI CTCAG 3 cut(s) 190, 255, 928
BspEI TCCGGA 1 cut(s) 1113
BspLI GGNNCC 7 cut(s) 60, 283, 625, 923, 938, 973, 1021
BspPI GGATC 1 cut(s) 1105
BspT104I TTCGAA 1 cut(s) 771
BspT107I GGYRCC 3 cut(s) 58, 921, 971
BspTNI GGTCTC 1 cut(s) 68
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 3 cut(s) 676, 842, 886
BsrFI RCCGGY 1 cut(s) 1037
BsrI ACTGG 2 cut(s) 627, 912
BssAI RCCGGY 1 cut(s) 1037
BssECI CCNNGG 4 cut(s) 220, 366, 945, 1153
BssMI GATC 1 cut(s) 1110
BssNI GRCGYC 3 cut(s) 59, 922, 972
BssT1I CCWWGG 2 cut(s) 220, 366
Bst4CI ACNGT 3 cut(s) 127, 822, 1125
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 3 cut(s) 59, 922, 972
BstAPI GCANNNNNTGC 1 cut(s) 888
BstBAI YACGTR 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 7 cut(s) 57, 296, 423, 884, 926, 930, 1039
BstDEI CTNAG 4 cut(s) 198, 263, 711, 915
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 5 cut(s) 76, 237, 352, 367, 592
BstH2I RGCGCY 4 cut(s) 62, 301, 925, 975
BstHHI GCGC 5 cut(s) 61, 300, 893, 924, 974
BstKTI GATC 1 cut(s) 1113
BstMAI GTCTC 4 cut(s) 8, 68, 974, 1111
BstMBI GATC 1 cut(s) 1110
BstMWI GCNNNNNNNGC 3 cut(s) 568, 888, 934
BstNSI RCATGY 2 cut(s) 583, 604
BstSCI CCNGG 1 cut(s) 944
BstSFI CTRYAG 2 cut(s) 784, 1121
BstSNI TACGTA 1 cut(s) 134
BstV1I GCAGC 4 cut(s) 16, 106, 520, 953
BstV2I GAAGAC 1 cut(s) 796
Bsu36I CCTNAGG 1 cut(s) 711
BsuRI GGCC 2 cut(s) 624, 1074
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 5 cut(s) 76, 237, 352, 367, 592
BtsI GCAGTG 1 cut(s) 671
BtsIMutI CAGTG 3 cut(s) 273, 671, 923
Cac8I GCNNGC 7 cut(s) 57, 296, 423, 884, 926, 930, 1039
CfoI GCGC 5 cut(s) 61, 300, 893, 924, 974
Cfr10I RCCGGY 1 cut(s) 1037
Cfr13I GGNCC 1 cut(s) 623
Csp6I GTAC 3 cut(s) 217, 288, 507
CviAII CATG 4 cut(s) 221, 388, 580, 601
CviQI GTAC 3 cut(s) 217, 288, 507
DdeI CTNAG 4 cut(s) 198, 263, 711, 915
DinI GGCGCC 3 cut(s) 60, 923, 973
DpnI GATC 1 cut(s) 1112
DpnII GATC 1 cut(s) 1110
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 719
Eco105I TACGTA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 220, 366
Eco24I GRGCYC 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 719
Eco81I CCTNAGG 1 cut(s) 711
Eco88I CYCGRG 1 cut(s) 1152
EcoICRI GAGCTC 1 cut(s) 719
EcoT14I CCWWGG 2 cut(s) 220, 366
EcoT38I GRGCYC 1 cut(s) 721
EgeI GGCGCC 3 cut(s) 60, 923, 973
EheI GGCGCC 3 cut(s) 60, 923, 973
ErhI CCWWGG 2 cut(s) 220, 366
Esp3I CGTCTC 2 cut(s) 8, 974
FaeI CATG 4 cut(s) 224, 391, 583, 604
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 220, 387, 579, 600
FauI CCCGC 2 cut(s) 438, 921
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 7 cut(s) 5, 120, 155, 534, 967, 970, 1042
FokI GGATG 5 cut(s) 83, 244, 359, 374, 579
FriOI GRGCYC 1 cut(s) 721
Fsp4HI GCNGC 7 cut(s) 5, 120, 155, 534, 967, 970, 1042
FspBI CTAG 4 cut(s) 158, 500, 764, 1088
GlaI GCGC 5 cut(s) 60, 299, 892, 923, 973
GluI GCNGC 7 cut(s) 5, 120, 155, 534, 967, 970, 1042
GsaI CCCAGC 2 cut(s) 271, 304
GsuI CTGGAG 1 cut(s) 1122
HaeII RGCGCY 4 cut(s) 62, 301, 925, 975
HaeIII GGCC 2 cut(s) 624, 1074
HapII CCGG 4 cut(s) 285, 945, 1038, 1114
HhaI GCGC 5 cut(s) 61, 300, 893, 924, 974
Hin1I GRCGYC 3 cut(s) 59, 922, 972
Hin1II CATG 4 cut(s) 224, 391, 583, 604
Hin6I GCGC 5 cut(s) 59, 298, 891, 922, 972
HinP1I GCGC 5 cut(s) 59, 298, 891, 922, 972
HincII GTYRAC 2 cut(s) 49, 781
HindII GTYRAC 2 cut(s) 49, 781
HindIII AAGCTT 2 cut(s) 569, 1135
HinfI GANTC 6 cut(s) 31, 212, 255, 392, 911, 1168
HpaII CCGG 4 cut(s) 285, 945, 1038, 1114
HphI GGTGA 2 cut(s) 236, 566
Hpy166II GTNNAC 4 cut(s) 49, 577, 781, 1093
Hpy188I TCNGA 2 cut(s) 264, 826
Hpy188III TCNNGA 5 cut(s) 722, 1101, 1114, 1152, 1165
Hpy8I GTNNAC 4 cut(s) 49, 577, 781, 1093
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 2 cut(s) 736, 745
HpyCH4III ACNGT 3 cut(s) 127, 822, 1125
HpyCH4IV ACGT 2 cut(s) 133, 801
HpyCH4V TGCA 7 cut(s) 4, 122, 664, 669, 835, 882, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 568, 888, 934
HpyF3I CTNAG 4 cut(s) 198, 263, 711, 915
HpySE526I ACGT 2 cut(s) 133, 801
Hsp92I GRCGYC 3 cut(s) 59, 922, 972
Hsp92II CATG 4 cut(s) 224, 391, 583, 604
HspAI GCGC 5 cut(s) 59, 298, 891, 922, 972
KasI GGCGCC 3 cut(s) 58, 921, 971
Kpn2I TCCGGA 1 cut(s) 1113
KroI GCCGGC 1 cut(s) 1037
KroNI GCCGGC 1 cut(s) 1039
Kzo9I GATC 1 cut(s) 1110
LmnI GCTCC 5 cut(s) 41, 716, 754, 942, 1025
Lsp1109I GCAGC 4 cut(s) 16, 106, 520, 953
LweI GCATC 6 cut(s) 184, 222, 352, 651, 864, 1170
MaeI CTAG 4 cut(s) 158, 500, 764, 1088
MaeII ACGT 2 cut(s) 133, 801
MaeIII GTNAC 5 cut(s) 98, 409, 554, 797, 845
MalI GATC 1 cut(s) 1112
MbiI CCGCTC 1 cut(s) 229
MboI GATC 1 cut(s) 1110
MboII GAAGA 6 cut(s) 76, 785, 796, 801, 1024, 1063
MhlI GDGCHC 1 cut(s) 721
MluCI AATT 2 cut(s) 244, 481
Mly113I GGCGCC 3 cut(s) 59, 922, 972
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 8 cut(s) 337, 412, 463, 594, 739, 745, 1085, 1148
MreI CGCCGGCG 1 cut(s) 1037
MroI TCCGGA 1 cut(s) 1113
MroNI GCCGGC 1 cut(s) 1037
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 2 cut(s) 192, 1068
MspI CCGG 4 cut(s) 285, 945, 1038, 1114
MspR9I CCNGG 1 cut(s) 946
MwoI GCNNNNNNNGC 3 cut(s) 568, 888, 934
NaeI GCCGGC 1 cut(s) 1039
NarI GGCGCC 3 cut(s) 59, 922, 972
NciI CCSGG 1 cut(s) 946
NcoI CCATGG 1 cut(s) 220
NdeII GATC 1 cut(s) 1110
NgoMIV GCCGGC 1 cut(s) 1037
NlaIII CATG 4 cut(s) 224, 391, 583, 604
NlaIV GGNNCC 7 cut(s) 60, 283, 625, 923, 938, 973, 1021
NmuCI GTSAC 3 cut(s) 98, 554, 845
NspI RCATGY 2 cut(s) 583, 604
NspV TTCGAA 1 cut(s) 771
OliI CACNNNNGTG 1 cut(s) 1068
PciI ACATGT 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 1039
PfeI GAWTC 5 cut(s) 31, 212, 255, 911, 1168
PkrI GCNGC 7 cut(s) 6, 121, 156, 535, 968, 971, 1043
PleI GAGTC 1 cut(s) 386
PluTI GGCGCC 3 cut(s) 62, 925, 975
PpsI GAGTC 1 cut(s) 386
Ppu21I YACGTR 1 cut(s) 134
PscI ACATGT 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 721
PspFI CCCAGC 2 cut(s) 267, 300
PspN4I GGNNCC 7 cut(s) 60, 283, 625, 923, 938, 973, 1021
PspPI GGNCC 1 cut(s) 623
RsaI GTAC 3 cut(s) 218, 289, 508
RsaNI GTAC 3 cut(s) 217, 288, 507
RseI CAYNNNNRTG 2 cut(s) 192, 1068
SacI GAGCTC 1 cut(s) 721
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 7 cut(s) 5, 120, 155, 534, 967, 970, 1042
Sau3AI GATC 1 cut(s) 1110
Sau96I GGNCC 1 cut(s) 623
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 946
SduI GDGCHC 1 cut(s) 721
SfaNI GCATC 6 cut(s) 184, 222, 352, 651, 864, 1170
SfcI CTRYAG 2 cut(s) 784, 1121
SfoI GGCGCC 3 cut(s) 60, 923, 973
SfuI TTCGAA 1 cut(s) 771
SgrAI CRCCGGYG 1 cut(s) 1037
SmiMI CAYNNNNRTG 2 cut(s) 192, 1068
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SnaBI TACGTA 1 cut(s) 134
Sse9I AATT 2 cut(s) 244, 481
SsiI CCGC 7 cut(s) 155, 229, 431, 808, 928, 969, 1041
SspDI GGCGCC 3 cut(s) 58, 921, 971
SspMI CTAG 4 cut(s) 158, 500, 764, 1088
SstI GAGCTC 1 cut(s) 721
StyD4I CCNGG 1 cut(s) 944
StyI CCWWGG 2 cut(s) 220, 366
TaaI ACNGT 3 cut(s) 127, 822, 1125
TaiI ACGT 2 cut(s) 136, 804
TaqI TCGA 4 cut(s) 48, 737, 771, 858
TasI AATT 2 cut(s) 244, 481
TatI WGTACW 1 cut(s) 506
TauI GCSGC 3 cut(s) 157, 972, 1044
TfiI GAWTC 5 cut(s) 31, 212, 255, 911, 1168
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 3 cut(s) 280, 671, 923
TseFI GTSAC 3 cut(s) 98, 554, 845
TseI GCWGC 4 cut(s) 4, 119, 533, 966
Tsp45I GTSAC 3 cut(s) 98, 554, 845
TspDTI ATGAA 2 cut(s) 369, 755
TspGWI ACGGA 1 cut(s) 947
TspRI CASTG 3 cut(s) 280, 671, 923
XceI RCATGY 2 cut(s) 583, 604
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 4 cut(s) 158, 500, 764, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.