Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8190652.1

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 680

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8190652.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 673 bp

ctgccttatcagcaacatcagacacagtggactgttggcagtgatgtgcgtccacttgggcagctcacccaagttcctaacctgcaggcgggatatgtaaattaccagcagcatggtctctacccacaggagaagacgctgtatttatgtttcgatgagcacaattccctgatcaattgttgttatgttctccgcaccataaatttgtccgagttacttgcatgctcctgtgagtttagcagcgatactgaagaaataaccaagtgcagctattgcacctccaaagtcaaaccggaatctcggttgcgccagcgggcttggctcttcgccagcgaggaaaatcctttcagctgcggtagggtggaggtgataattcctgcgcgtatgggttgctgtgcctccggctcccaaatcttcttctctggtggcatagctccactaccacttcaggaaagacgatttatgaaaagactatttctgccaagtggagatgtctatagttttgaacccaagtctatgttttggaaaaagcatgattggagtttcctgaaggggaaaccagaccccttgctttttgaggtgaacggaaatctctattgtctcacaggtaggcccctaggtttttctcttgatcgtcccactttcgaggtatactatagcagttctggtgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

224

Amino Acids

25.62

Weight (kDa)

7.02

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	382
AciI	CCGC	4 cut(s)	89, 193, 313, 354
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	3 cut(s)	270, 431, 569
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	506
AluBI	AGCT	4 cut(s)	64, 270, 351, 434
AluI	AGCT	4 cut(s)	64, 270, 351, 434
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	122, 605
AoxI	GGCC	1 cut(s)	611
ApeKI	GCWGC	5 cut(s)	61, 109, 240, 267, 351
ApoI	RAATTY	1 cut(s)	202
AspA2I	CCTAGG	1 cut(s)	616
AspLEI	GCGC	2 cut(s)	309, 382
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	3 cut(s)	58, 379, 592
AvrII	CCTAGG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	73, 121, 252, 279, 338
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	2 cut(s)	122, 605
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	3 cut(s)	83, 496, 655
BfuAI	ACCTGC	1 cut(s)	90
BisI	GCNGC	5 cut(s)	62, 110, 241, 268, 352
BlnI	CCTAGG	1 cut(s)	616
BlsI	GCNGC	5 cut(s)	63, 111, 242, 269, 353
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	2 cut(s)	406, 614
BpiI	GAAGAC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	616
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	616
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseXI	GCAGC	5 cut(s)	73, 121, 252, 279, 338
BsgI	GTGCAG	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	293, 402
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	122, 605
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	613
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	171, 631
BspACI	CCGC	4 cut(s)	89, 193, 313, 354
BspANI	GGCC	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	406, 614
BspMAI	CTGCAG	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	2 cut(s)	171, 631
BssNAI	GTATAC	1 cut(s)	652
BssT1I	CCWWGG	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	27, 34
Bst6I	CTCTTC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstC8I	GCNNGC	5 cut(s)	87, 223, 311, 315, 331
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	309, 382
BstKTI	GATC	2 cut(s)	174, 634
BstMAI	GTCTC	2 cut(s)	122, 605
BstMBI	GATC	2 cut(s)	171, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 273, 319
BstNSI	RCATGY	1 cut(s)	225
BstSFI	CTRYAG	3 cut(s)	83, 496, 655
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	5 cut(s)	73, 121, 252, 279, 338
BstV2I	GAAGAC	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstZ17I	GTATAC	1 cut(s)	652
BsuRI	GGCC	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	32, 46
BveI	ACCTGC	1 cut(s)	90
Cac8I	GCNNGC	5 cut(s)	87, 223, 311, 315, 331
CfoI	GCGC	2 cut(s)	309, 382
Cfr13I	GGNCC	1 cut(s)	612
CseI	GACGC	2 cut(s)	38, 145
CviAII	CATG	3 cut(s)	113, 222, 533
CviJI	RGCY	8 cut(s)	64, 270, 317, 322, 351, 405, 434, 613
CviKI_1	RGCY	8 cut(s)	64, 270, 317, 322, 351, 405, 434, 613
DpnI	GATC	2 cut(s)	173, 633
DpnII	GATC	2 cut(s)	171, 631
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	270, 431, 569
EcoO109I	RGGNCCY	1 cut(s)	612
EcoT14I	CCWWGG	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	3 cut(s)	116, 225, 536
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	3 cut(s)	112, 221, 532
FauI	CCCGC	2 cut(s)	82, 306
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	62, 110, 241, 268, 352
Fsp4HI	GCNGC	5 cut(s)	62, 110, 241, 268, 352
FspBI	CTAG	1 cut(s)	617
GlaI	GCGC	2 cut(s)	308, 381
GluI	GCNGC	5 cut(s)	62, 110, 241, 268, 352
HaeIII	GGCC	1 cut(s)	613
HapII	CCGG	2 cut(s)	293, 402
HgaI	GACGC	2 cut(s)	38, 145
HhaI	GCGC	2 cut(s)	309, 382
Hin1II	CATG	3 cut(s)	116, 225, 536
Hin6I	GCGC	2 cut(s)	307, 380
HinP1I	GCGC	2 cut(s)	307, 380
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	2 cut(s)	293, 402
HphI	GGTGA	3 cut(s)	58, 379, 592
Hpy166II	GTNNAC	4 cut(s)	30, 53, 583, 652
Hpy188I	TCNGA	2 cut(s)	21, 211
Hpy188III	TCNNGA	3 cut(s)	449, 547, 629
Hpy8I	GTNNAC	4 cut(s)	30, 53, 583, 652
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	2 cut(s)	27, 34
HpyCH4V	TGCA	4 cut(s)	85, 221, 267, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 273, 319
Hsp92II	CATG	3 cut(s)	116, 225, 536
HspAI	GCGC	2 cut(s)	307, 380
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	171, 631
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	230, 410, 439
Lsp1109I	GCAGC	5 cut(s)	73, 121, 252, 279, 338
MaeI	CTAG	1 cut(s)	617
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	2 cut(s)	173, 633
MboI	GATC	2 cut(s)	171, 631
MboII	GAAGA	5 cut(s)	145, 263, 316, 406, 409
MfeI	CAATTG	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	5 cut(s)	100, 163, 175, 202, 372
MnlI	CCTC	6 cut(s)	289, 328, 358, 409, 571, 640
MspA1I	CMGCKG	2 cut(s)	313, 351
MspI	CCGG	2 cut(s)	293, 402
MunI	CAATTG	1 cut(s)	175
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	3 cut(s)	10, 273, 319
NdeII	GATC	2 cut(s)	171, 631
NlaIII	CATG	3 cut(s)	116, 225, 536
NlaIV	GGNNCC	2 cut(s)	406, 614
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	5 cut(s)	63, 111, 242, 269, 353
PspN4I	GGNNCC	2 cut(s)	406, 614
PspPI	GGNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	329
SatI	GCNGC	5 cut(s)	62, 110, 241, 268, 352
Sau3AI	GATC	2 cut(s)	171, 631
Sau96I	GGNCC	1 cut(s)	612
SbfI	CCTGCAGG	1 cut(s)	87
SdaI	CCTGCAGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	162
SfcI	CTRYAG	3 cut(s)	83, 496, 655
SphI	GCATGC	1 cut(s)	225
Sse8387I	CCTGCAGG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	100, 163, 175, 202, 372
SsiI	CCGC	4 cut(s)	89, 193, 313, 354
SspMI	CTAG	1 cut(s)	617
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	2 cut(s)	27, 34
TaqI	TCGA	2 cut(s)	153, 645
TasI	AATT	5 cut(s)	100, 163, 175, 202, 372
TfiI	GAWTC	1 cut(s)	296
TscAI	CASTG	2 cut(s)	32, 46
TseI	GCWGC	5 cut(s)	61, 109, 240, 267, 351
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	2 cut(s)	32, 46
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	651
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.