Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

22593364 .. 22594996

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCAGCAACTTGAGACGACAGCCGATGAGATTCGCTCCATACGGGTCGACGGGCTGGCGCCGATGATGGATGAGACCTATCTCTTCAACTGCTTCTGTGACAACGCAAAGGTTGTGGCTGCAACGGTTTTGCACAATCGGCGAACAGGATTGCCGCTAGATTATGGTTTTGTGGAGTTTGCTTCTCACGGCGATGCTGAGTTTGTCTTGGATTCGTACCATGGTGAGCGGATGCCCAACTTCAATTATGAGAGATTCTGTCTGAGCTGGGACACTGATGGTTCCGGTACAAGGTGGCGCTGGGATTATACTTACGAGAGTTGCTCTTTCTTTGGTTATTACGAGGATGGTAATGAAATGGATGCCAAGGCATTGATTACGCACTACATGGACTCCATACCCTCTGTTGTTACTACAAAGCGAGCTTACCCGCAATCTGCCTACCCAAATACTCGTGGAGTTTCAGGGGAGGCTTTTCCAAATTACACAGAAAACCAGCTAGATCATTCAAAGTCGAAGGATTTAAGTCCTGCTGACTATACGGAAACCGATGTTGACAAGCGTTTGAAGTTTACGGACATGCCTCTTACTCATCCTAACATGTATCAACAAGGATATGTCGGCCCTAGTCTTACAATCCAACAGAACCAACCTCCAGACCCGATGCAGTCGAATGGTGGTTGTGGTGCTGGATATGTTAATGACCAGCAGCTCACCCAAGTTCCTAAGGGAGATCTGGAAAGGGTTTCCTCAATGAAGAATGAGAAGGAGCTGTATCTATGTTTCGAAGAATTCAATTTTCAAAGAGGAGGTTACGTCATCCGCACCATCAAACTGTTAGAGTTATTGCAATGCTCTTGTCACTTTAGCATCGAAACTTGCGAAATAACCAAGTGCAAGCATTGCGCCCCCAAAATAAAACTGGAATCTCAGTGGCGCCACCGGGCTTGGCTCCACACCGGGGAAAAAGTCCGTGAAAGCTGCGGCGCCAAAGAGACGAATATGCCATTTGGTATGATTTGCTGTTCCTACGGCTCCCAAATCATCTTCGCTGGCGGCTTGGTTCGCCAACCAGATAGGGAAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

364

Amino Acids

41.43

Weight (kDa)

5.28

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	14 - 80	1.9e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	58, 936, 986
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	6 cut(s)	155, 229, 431, 823, 984, 1056
AcsI	RAATTY	1 cut(s)	791
AcyI	GRCGYC	3 cut(s)	59, 937, 987
AfaI	GTAC	2 cut(s)	218, 289
AfiI	CCNNNNNNNGG	2 cut(s)	291, 961
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	6 cut(s)	88, 244, 510, 568, 796, 803
AluBI	AGCT	6 cut(s)	267, 425, 499, 712, 772, 981
AluI	AGCT	6 cut(s)	267, 425, 499, 712, 772, 981
Alw26I	GTCTC	3 cut(s)	8, 68, 989
AoxI	GGCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	4, 119, 709, 981
ApoI	RAATTY	1 cut(s)	791
AspLEI	GCGC	5 cut(s)	61, 300, 908, 939, 989
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	2 cut(s)	944, 961
AsuHPI	GGTGA	2 cut(s)	236, 706
AsuII	TTCGAA	1 cut(s)	786
AxyI	CCTNAGG	1 cut(s)	726
BanI	GGYRCC	3 cut(s)	58, 936, 986
BauI	CACGAG	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	16, 106, 721, 968
BccI	CCATC	4 cut(s)	61, 272, 341, 836
BceAI	ACGGC	2 cut(s)	205, 1048
BcnI	CCSGG	2 cut(s)	944, 961
BcoDI	GTCTC	3 cut(s)	8, 68, 989
BfaI	CTAG	3 cut(s)	158, 500, 627
BfoI	RGCGCY	4 cut(s)	62, 301, 940, 990
BglII	AGATCT	1 cut(s)	733
BisI	GCNGC	7 cut(s)	5, 120, 155, 710, 982, 985, 1057
BlsI	GCNGC	7 cut(s)	6, 121, 156, 711, 983, 986, 1058
Bme1390I	CCNGG	2 cut(s)	944, 961
BmgT120I	GGNCC	1 cut(s)	623
BmiI	GGNNCC	6 cut(s)	60, 283, 938, 953, 988, 1036
BmrFI	CCNGG	2 cut(s)	944, 961
BmsI	GCATC	5 cut(s)	184, 222, 352, 654, 879
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 308, 340
BpmI	CTGGAG	1 cut(s)	639
Bpu14I	TTCGAA	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	2 cut(s)	944, 961
BsaHI	GRCGYC	3 cut(s)	59, 937, 987
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	220, 366, 960
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 801, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 961
Bse1I	ACTGG	1 cut(s)	927
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	2 cut(s)	857, 901
BseDI	CCNNGG	3 cut(s)	220, 366, 960
BseGI	GGATG	6 cut(s)	76, 237, 352, 367, 592, 819
BseLI	CCNNNNNNNGG	2 cut(s)	291, 961
BseMI	GCAATG	2 cut(s)	857, 901
BseMII	CTCAG	3 cut(s)	189, 254, 944
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	16, 106, 721, 968
BseYI	CCCAGC	2 cut(s)	267, 300
BshFI	GGCC	1 cut(s)	624
BshNI	GGYRCC	3 cut(s)	58, 936, 986
BsiSI	CCGG	3 cut(s)	285, 943, 960
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	2 cut(s)	291, 961
BsmAI	GTCTC	3 cut(s)	8, 68, 989
BsmBI	CGTCTC	2 cut(s)	8, 989
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	68
Bsp119I	TTCGAA	1 cut(s)	786
Bsp143I	GATC	2 cut(s)	502, 733
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	6 cut(s)	155, 229, 431, 823, 984, 1056
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	3 cut(s)	190, 255, 943
BspLI	GGNNCC	6 cut(s)	60, 283, 938, 953, 988, 1036
BspT104I	TTCGAA	1 cut(s)	786
BspT107I	GGYRCC	3 cut(s)	58, 936, 986
BspTNI	GGTCTC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	229
BsrDI	GCAATG	2 cut(s)	857, 901
BsrI	ACTGG	1 cut(s)	927
BssECI	CCNNGG	3 cut(s)	220, 366, 960
BssMI	GATC	2 cut(s)	502, 733
BssNI	GRCGYC	3 cut(s)	59, 937, 987
BssSI	CACGAG	1 cut(s)	453
BssT1I	CCWWGG	2 cut(s)	220, 366
Bst2BI	CACGAG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	127, 837
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	59, 937, 987
BstAPI	GCANNNNNTGC	1 cut(s)	903
BstBI	TTCGAA	1 cut(s)	786
BstC8I	GCNNGC	4 cut(s)	57, 423, 899, 1054
BstDEI	CTNAG	4 cut(s)	198, 263, 726, 930
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	6 cut(s)	76, 237, 352, 367, 592, 819
BstH2I	RGCGCY	4 cut(s)	62, 301, 940, 990
BstHHI	GCGC	5 cut(s)	61, 300, 908, 939, 989
BstKTI	GATC	2 cut(s)	505, 736
BstMAI	GTCTC	3 cut(s)	8, 68, 989
BstMBI	GATC	2 cut(s)	502, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 903, 1065
BstNSI	RCATGY	2 cut(s)	583, 604
BstSCI	CCNGG	2 cut(s)	942, 959
BstV1I	GCAGC	4 cut(s)	16, 106, 721, 968
BstX2I	RGATCY	1 cut(s)	733
BstYI	RGATCY	1 cut(s)	733
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	6 cut(s)	76, 237, 352, 367, 592, 819
BtsIMutI	CAGTG	2 cut(s)	273, 938
Cac8I	GCNNGC	4 cut(s)	57, 423, 899, 1054
CfoI	GCGC	5 cut(s)	61, 300, 908, 939, 989
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	217, 288
CspCI	CAANNNNNGTGG	4 cut(s)	96, 131, 929, 964
CviAII	CATG	4 cut(s)	221, 388, 580, 601
CviQI	GTAC	2 cut(s)	217, 288
DdeI	CTNAG	4 cut(s)	198, 263, 726, 930
DinI	GGCGCC	3 cut(s)	60, 938, 988
DpnI	GATC	2 cut(s)	504, 735
DpnII	GATC	2 cut(s)	502, 733
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	220, 366
Eco31I	GGTCTC	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	726
EcoRI	GAATTC	1 cut(s)	791
EcoT14I	CCWWGG	2 cut(s)	220, 366
EgeI	GGCGCC	3 cut(s)	60, 938, 988
EheI	GGCGCC	3 cut(s)	60, 938, 988
ErhI	CCWWGG	2 cut(s)	220, 366
Esp3I	CGTCTC	2 cut(s)	8, 989
FaeI	CATG	4 cut(s)	224, 391, 583, 604
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	4 cut(s)	220, 387, 579, 600
FauI	CCCGC	1 cut(s)	438
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	5, 120, 155, 710, 982, 985, 1057
FokI	GGATG	6 cut(s)	83, 244, 359, 374, 579, 806
Fsp4HI	GCNGC	7 cut(s)	5, 120, 155, 710, 982, 985, 1057
FspBI	CTAG	3 cut(s)	158, 500, 627
GlaI	GCGC	5 cut(s)	60, 299, 907, 938, 988
GluI	GCNGC	7 cut(s)	5, 120, 155, 710, 982, 985, 1057
GsaI	CCCAGC	2 cut(s)	271, 304
GsuI	CTGGAG	1 cut(s)	639
HaeII	RGCGCY	4 cut(s)	62, 301, 940, 990
HaeIII	GGCC	1 cut(s)	624
HapII	CCGG	3 cut(s)	285, 943, 960
HhaI	GCGC	5 cut(s)	61, 300, 908, 939, 989
Hin1I	GRCGYC	3 cut(s)	59, 937, 987
Hin1II	CATG	4 cut(s)	224, 391, 583, 604
Hin6I	GCGC	5 cut(s)	59, 298, 906, 937, 987
HinP1I	GCGC	5 cut(s)	59, 298, 906, 937, 987
HincII	GTYRAC	2 cut(s)	49, 556
HindII	GTYRAC	2 cut(s)	49, 556
HinfI	GANTC	5 cut(s)	31, 212, 255, 392, 926
HpaII	CCGG	3 cut(s)	285, 943, 960
HphI	GGTGA	2 cut(s)	236, 706
Hpy166II	GTNNAC	3 cut(s)	49, 556, 573
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	656, 737
Hpy8I	GTNNAC	3 cut(s)	49, 556, 573
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	511, 760
HpyCH4III	ACNGT	2 cut(s)	127, 837
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	6 cut(s)	4, 122, 133, 667, 850, 897
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 903, 1065
HpyF3I	CTNAG	4 cut(s)	198, 263, 726, 930
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	3 cut(s)	59, 937, 987
Hsp92II	CATG	4 cut(s)	224, 391, 583, 604
HspAI	GCGC	5 cut(s)	59, 298, 906, 937, 987
KasI	GGCGCC	3 cut(s)	58, 936, 986
Kzo9I	GATC	2 cut(s)	502, 733
LmnI	GCTCC	4 cut(s)	41, 769, 957, 1040
Lsp1109I	GCAGC	4 cut(s)	16, 106, 721, 968
LweI	GCATC	5 cut(s)	184, 222, 352, 654, 879
MaeI	CTAG	3 cut(s)	158, 500, 627
MaeII	ACGT	1 cut(s)	816
MaeIII	GTNAC	4 cut(s)	98, 409, 812, 860
MalI	GATC	2 cut(s)	504, 735
MbiI	CCGCTC	1 cut(s)	229
MboI	GATC	2 cut(s)	502, 733
MboII	GAAGA	4 cut(s)	76, 769, 800, 1039
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	4 cut(s)	244, 481, 791, 796
Mly113I	GGCGCC	3 cut(s)	59, 937, 987
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	8 cut(s)	337, 412, 463, 594, 663, 760, 800, 803
MseI	TTAA	2 cut(s)	524, 699
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	3 cut(s)	285, 943, 960
MspR9I	CCNGG	2 cut(s)	944, 961
MwoI	GCNNNNNNNGC	3 cut(s)	139, 903, 1065
NarI	GGCGCC	3 cut(s)	59, 937, 987
NciI	CCSGG	2 cut(s)	944, 961
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	502, 733
NlaIII	CATG	4 cut(s)	224, 391, 583, 604
NlaIV	GGNNCC	6 cut(s)	60, 283, 938, 953, 988, 1036
NmuCI	GTSAC	2 cut(s)	98, 860
NspI	RCATGY	2 cut(s)	583, 604
NspV	TTCGAA	1 cut(s)	786
PciI	ACATGT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	879
PfeI	GAWTC	4 cut(s)	31, 212, 255, 926
PkrI	GCNGC	7 cut(s)	6, 121, 156, 711, 983, 986, 1058
PleI	GAGTC	1 cut(s)	386
PluTI	GGCGCC	3 cut(s)	62, 940, 990
PpsI	GAGTC	1 cut(s)	386
PscI	ACATGT	1 cut(s)	600
PspFI	CCCAGC	2 cut(s)	267, 300
PspN4I	GGNNCC	6 cut(s)	60, 283, 938, 953, 988, 1036
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	2 cut(s)	218, 289
RsaNI	GTAC	2 cut(s)	217, 288
RseI	CAYNNNNRTG	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	524, 699
SatI	GCNGC	7 cut(s)	5, 120, 155, 710, 982, 985, 1057
Sau3AI	GATC	2 cut(s)	502, 733
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	944, 961
SfaNI	GCATC	5 cut(s)	184, 222, 352, 654, 879
SfoI	GGCGCC	3 cut(s)	60, 938, 988
SfuI	TTCGAA	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	4 cut(s)	244, 481, 791, 796
SsiI	CCGC	6 cut(s)	155, 229, 431, 823, 984, 1056
SspDI	GGCGCC	3 cut(s)	58, 936, 986
SspMI	CTAG	3 cut(s)	158, 500, 627
StyD4I	CCNGG	2 cut(s)	942, 959
StyI	CCWWGG	2 cut(s)	220, 366
TaaI	ACNGT	2 cut(s)	127, 837
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	5 cut(s)	48, 515, 671, 786, 873
TasI	AATT	4 cut(s)	244, 481, 791, 796
TauI	GCSGC	3 cut(s)	157, 987, 1059
TfiI	GAWTC	4 cut(s)	31, 212, 255, 926
Tru1I	TTAA	2 cut(s)	524, 699
Tru9I	TTAA	2 cut(s)	524, 699
TscAI	CASTG	2 cut(s)	280, 938
TseFI	GTSAC	2 cut(s)	98, 860
TseI	GCWGC	4 cut(s)	4, 119, 709, 981
Tsp45I	GTSAC	2 cut(s)	98, 860
TspDTI	ATGAA	2 cut(s)	369, 770
TspGWI	ACGGA	3 cut(s)	557, 590, 962
TspRI	CASTG	2 cut(s)	280, 938
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	2 cut(s)	583, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	158, 500, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.