Rh1AG152100

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000753
Physical Location & Seq
Reverse (-)
28480636 .. 28482327
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG152100.1

Sequence Viewer

Length: 1692 bp
ATGGATAGTTACAAGCGTTTGAAGCATGCACATGTGGATCTATGGAATGGTGGTAATGGTGCTGGGTTTATGTTTATGCAGAACAACTTGATGCGTCCACATCACCTTAACCTGTATCATGGAGGACAGGCTGGATATGTAAATTACCAGCGGCATGGTCTATACCCGCAGCCTCGTGCTTATCAGCTGCCTTATCAGCAACATCAGACACAGTGGACTATTGGCAGTGATGTGCGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTATACCCGCAGCCTTGTGCTTATCAGCTGCCTTATCAGCAACATCAAACACAGTGGACTGTTGCTAGTGATGTGTGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCGGGATATGTAAATTACCAGCAGCATGGTCTCTACCCACAGGAGAAGAAGCTGTATTTATGTTTCGATGAGCGCAATGCCCCGACCAATTGTTGTTATGTTCTCCGCACCATAAATTTGTCCGAGTTACTTGCATGCTCCTGTGAGTTTAGCAGAGATACTGAAGAAATAACCAAGTGCAGCTATTGCACTTCCAAAGTCAAACCGGAATCTCGGTTGCGCCAGCGGGCTTGGCTCTTCGCCAGCGAGGAAAATCCTTTCAGCTGTGGTAGGGTGGAGGTGATAATTCCTGCGCGTATGGGTTGCTGTGCCTCCGGCTCCCAAATCTTCTTCGCTGGTGGCATAGCTCCACTACCACTTAGGGAAAGACTATTTGTGGAAATACAATTTCTGCCAAGTGGAGATGTCTATAGTTTTGAACCCAAGTCTATGTTTTGGAAAAAGCATGATTGGAGTTTCCTGAAGGGGAAACCAGACCCCTTGCTTTTTGAGGTGAACGGAAATCTCTATTGTCTCGCAGGTAGGCCCCTAGGTTTTTCTCTTGATCGTCCCACTTTCGAGGTATACTATAGCAGTTCTGGTGAATGTGAGGCTTTGCCGGATCCTCCATTTTACCTACCGGAACTAGATCACAACAAAAACTACAGCGGCCCTTTGCCTAGTAGTGAATTGTCTTATGCTATTGTTGGTACCAAGATCTTGATCTCGAGCAGGCACAACAATGAATCAATCCCTAACTTTCCCATTATGTGTTTTGATGTGAATGAGAAGGAAAAGAAATGGAGAGAGATGACTTCTTTGTTCGATGGTAAGCCCTTTCCCTTCATCAGCAGGGCGGCTTTGGTCTTGGACTTGAACGATGGTACACATGATAAGGTCATGTTTTCCGTTCGTGAATATCACGAGATGTATGTCTCCCGATTAGTTGTGAATGATGATGGTAGTATATACAACTCTCAGGACTCTCCTCTGTTGTTTTTAAACTGGTTCTATACCTTCTTTGGTGACCTTTGTCCTTTACATTCAAAGTCATACAGCTTTGTCGATCTAGGAAATCAAAAAGTTGGCTTTGTTGTGTGCGGGAACATGGTTACAATGGCAAGAGATGATACACCTTCTCTCCGGAAGGTGCGTGTTGTTGTGTTAGTAATTGAATATGAAGTGACAAAATCAAGATATGTATGGGGAAAGCTCCTGGCCACTCGCACCTTTGAATACAATTGCCATTCCGCGGGCCTCCGATCCGTCGACTTGATTGGTAGCTTTGTGTTCTAA

Protein Analysis

563

Amino Acids

64.46

Weight (kDa)

6.97

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 296 - 424 3.7e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 276, 420, 926
Acc65I GGTACC 1 cut(s) 1106
AccB1I GGYRCC 1 cut(s) 1106
AccI GTMKAC 2 cut(s) 981, 1665
AccII CGCG 2 cut(s) 712, 1649
AccIII TCCGGA 1 cut(s) 1539
AclWI GGATC 4 cut(s) 45, 1013, 1026, 1653
AcoI YGGCCR 1 cut(s) 1614
AcsI RAATTY 1 cut(s) 532
AcuI CTGAAG 2 cut(s) 600, 899
AfaI GTAC 2 cut(s) 1108, 1282
AfiI CCNNNNNNNGG 2 cut(s) 418, 1648
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 6 cut(s) 22, 836, 1273, 1443, 1571, 1631
AjnI CCWGG 1 cut(s) 1611
Alw26I GTCTC 3 cut(s) 452, 935, 1336
AlwI GGATC 4 cut(s) 45, 1013, 1026, 1653
Ama87I CYCGRG 1 cut(s) 1123
Aor13HI TCCGGA 1 cut(s) 1539
AoxI GGCC 4 cut(s) 941, 1066, 1614, 1651
ApeKI GCWGC 9 cut(s) 169, 187, 247, 295, 313, 331, 391, 439, 597
ApoI RAATTY 1 cut(s) 532
Asp718I GGTACC 1 cut(s) 1106
AspA2I CCTAGG 1 cut(s) 946
AspLEI GCGC 3 cut(s) 492, 639, 712
AspS9I GGNCC 3 cut(s) 942, 1067, 1651
AsuHPI GGTGA 7 cut(s) 95, 244, 388, 709, 922, 1010, 1433
AvaI CYCGRG 1 cut(s) 1123
AvrII CCTAGG 1 cut(s) 946
BalI TGGCCA 1 cut(s) 1616
BamHI GGATCC 1 cut(s) 1018
BanI GGYRCC 1 cut(s) 1106
BauI CACGAG 2 cut(s) 174, 1319
BbvI GCAGC 9 cut(s) 174, 181, 259, 307, 318, 325, 403, 451, 609
BccI CCATC 3 cut(s) 1217, 1271, 1349
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 1 cut(s) 1613
BcoDI GTCTC 3 cut(s) 452, 935, 1336
BfaI CTAG 5 cut(s) 369, 947, 1043, 1077, 1466
BfmI CTRYAG 5 cut(s) 269, 413, 826, 985, 1060
BfuAI ACCTGC 3 cut(s) 276, 420, 926
BglII AGATCT 1 cut(s) 1113
BlnI CCTAGG 1 cut(s) 946
Bme1390I CCNGG 1 cut(s) 1613
BmeT110I CYCGRG 1 cut(s) 1123
BmgT120I GGNCC 3 cut(s) 942, 1067, 1651
BmiI GGNNCC 4 cut(s) 736, 944, 1020, 1108
BmrFI CCNGG 1 cut(s) 1613
BmsI GCATC 1 cut(s) 81
BoxI GACNNNNGTC 1 cut(s) 1428
BsaBI GATNNNNATC 1 cut(s) 1118
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 2 cut(s) 946, 1647
BsaWI WCCGGW 3 cut(s) 622, 1036, 1539
BsaXI ACNNNNNCTCC 2 cut(s) 1521, 1551
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 1648
Bse1I ACTGG 1 cut(s) 1406
Bse3DI GCAATG 1 cut(s) 499
Bse8I GATNNNNATC 1 cut(s) 1118
BseAI TCCGGA 1 cut(s) 1539
BseBI CCWGG 1 cut(s) 1613
BseDI CCNNGG 2 cut(s) 946, 1647
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 2 cut(s) 418, 1648
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 1388
BseNI ACTGG 1 cut(s) 1406
BseRI GAGGAG 1 cut(s) 1374
BseXI GCAGC 9 cut(s) 174, 181, 259, 307, 318, 325, 403, 451, 609
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 2 cut(s) 712, 1649
BshFI GGCC 4 cut(s) 943, 1068, 1616, 1653
BshNI GGYRCC 1 cut(s) 1106
BsiHKCI CYCGRG 1 cut(s) 1123
BsiSI CCGG 5 cut(s) 623, 732, 1016, 1037, 1540
BslFI GGGAC 1 cut(s) 951
BslI CCNNNNNNNGG 2 cut(s) 418, 1648
BsmAI GTCTC 3 cut(s) 452, 935, 1336
BsmFI GGGAC 1 cut(s) 951
BsnI GGCC 4 cut(s) 943, 1068, 1616, 1653
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 1123
Bsp13I TCCGGA 1 cut(s) 1539
Bsp143I GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
BspANI GGCC 4 cut(s) 943, 1068, 1616, 1653
BspCNI CTCAG 1 cut(s) 1387
BspEI TCCGGA 1 cut(s) 1539
BspFNI CGCG 2 cut(s) 712, 1649
BspLI GGNNCC 4 cut(s) 736, 944, 1020, 1108
BspMAI CTGCAG 2 cut(s) 273, 417
BspMI ACCTGC 3 cut(s) 276, 420, 926
BspPI GGATC 4 cut(s) 45, 1013, 1026, 1653
BspQI GCTCTTC 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 1106
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 1 cut(s) 1406
BssECI CCNNGG 2 cut(s) 946, 1647
BssMI GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
BssNAI GTATAC 1 cut(s) 982
BssSI CACGAG 2 cut(s) 174, 1319
BssT1I CCWWGG 1 cut(s) 946
Bst1107I GTATAC 1 cut(s) 982
Bst2BI CACGAG 2 cut(s) 174, 1319
Bst2UI CCWGG 1 cut(s) 1613
Bst4CI ACNGT 3 cut(s) 213, 357, 364
Bst6I CTCTTC 1 cut(s) 659
BstAPI GCANNNNNTGC 1 cut(s) 603
BstC8I GCNNGC 9 cut(s) 27, 273, 417, 553, 641, 645, 661, 1130, 1651
BstDEI CTNAG 2 cut(s) 776, 1374
BstDSI CCRYGG 1 cut(s) 1647
BstEII GGTNACC 1 cut(s) 1421
BstFNI CGCG 2 cut(s) 712, 1649
BstHHI GCGC 3 cut(s) 492, 639, 712
BstKTI GATC 8 cut(s) 40, 964, 1021, 1048, 1116, 1122, 1465, 1661
BstMAI GTCTC 3 cut(s) 452, 935, 1336
BstMBI GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
BstMWI GCNNNNNNNGC 5 cut(s) 22, 196, 340, 603, 649
BstNI CCWGG 1 cut(s) 1613
BstNSI RCATGY 3 cut(s) 29, 35, 555
BstPAI GACNNNNGTC 1 cut(s) 1428
BstPI GGTNACC 1 cut(s) 1421
BstSCI CCNGG 1 cut(s) 1611
BstSFI CTRYAG 5 cut(s) 269, 413, 826, 985, 1060
BstUI CGCG 2 cut(s) 712, 1649
BstV1I GCAGC 9 cut(s) 174, 181, 259, 307, 318, 325, 403, 451, 609
BstX2I RGATCY 3 cut(s) 37, 1018, 1113
BstXI CCANNNNNNTGG 3 cut(s) 155, 299, 443
BstYI RGATCY 3 cut(s) 37, 1018, 1113
BstZ17I GTATAC 1 cut(s) 982
BsuRI GGCC 4 cut(s) 943, 1068, 1616, 1653
BtgI CCRYGG 1 cut(s) 1647
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 3 cut(s) 218, 232, 362
BveI ACCTGC 3 cut(s) 276, 420, 926
Cac8I GCNNGC 9 cut(s) 27, 273, 417, 553, 641, 645, 661, 1130, 1651
CfoI GCGC 3 cut(s) 492, 639, 712
Cfr13I GGNCC 3 cut(s) 942, 1067, 1651
Cfr42I CCGCGG 1 cut(s) 1650
CseI GACGC 2 cut(s) 83, 224
Csp6I GTAC 2 cut(s) 1107, 1281
CspCI CAANNNNNGTGG 2 cut(s) 338, 373
CviQI GTAC 2 cut(s) 1107, 1281
DdeI CTNAG 2 cut(s) 776, 1374
DpnI GATC 8 cut(s) 39, 963, 1020, 1047, 1115, 1121, 1464, 1660
DpnII GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
DraI TTTAAA 1 cut(s) 1398
EaeI YGGCCR 1 cut(s) 1614
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco130I CCWWGG 1 cut(s) 946
Eco31I GGTCTC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 600, 899
Eco88I CYCGRG 1 cut(s) 1123
Eco91I GGTNACC 1 cut(s) 1421
EcoO109I RGGNCCY 1 cut(s) 942
EcoO65I GGTNACC 1 cut(s) 1421
EcoRII CCWGG 1 cut(s) 1611
EcoT14I CCWWGG 1 cut(s) 946
ErhI CCWWGG 1 cut(s) 946
FaqI GGGAC 1 cut(s) 951
FauI CCCGC 6 cut(s) 174, 318, 412, 636, 1490, 1642
FblI GTMKAC 2 cut(s) 981, 1665
FspBI CTAG 5 cut(s) 369, 947, 1043, 1077, 1466
GlaI GCGC 3 cut(s) 491, 638, 711
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 4 cut(s) 943, 1068, 1616, 1653
HapII CCGG 5 cut(s) 623, 732, 1016, 1037, 1540
HgaI GACGC 2 cut(s) 83, 224
HhaI GCGC 3 cut(s) 492, 639, 712
Hin6I GCGC 3 cut(s) 490, 637, 710
HinP1I GCGC 3 cut(s) 490, 637, 710
HincII GTYRAC 1 cut(s) 1666
HindII GTYRAC 1 cut(s) 1666
HinfI GANTC 3 cut(s) 626, 1142, 1379
HpaII CCGG 5 cut(s) 623, 732, 1016, 1037, 1540
HphI GGTGA 7 cut(s) 95, 244, 388, 709, 922, 1010, 1433
Hpy166II GTNNAC 9 cut(s) 98, 216, 239, 360, 383, 913, 982, 1283, 1666
Hpy188I TCNGA 3 cut(s) 207, 541, 1658
Hpy8I GTNNAC 9 cut(s) 98, 216, 239, 360, 383, 913, 982, 1283, 1666
Hpy99I CGWCG 1 cut(s) 1667
HpyAV CCTTC 6 cut(s) 874, 1180, 1249, 1423, 1537, 1542
HpyCH4III ACNGT 3 cut(s) 213, 357, 364
HpyCH4V TGCA 7 cut(s) 29, 79, 271, 415, 551, 597, 606
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 196, 340, 603, 649
HpyF3I CTNAG 2 cut(s) 776, 1374
HspAI GCGC 3 cut(s) 490, 637, 710
Kpn2I TCCGGA 1 cut(s) 1539
KpnI GGTACC 1 cut(s) 1110
KspI CCGCGG 1 cut(s) 1650
Kzo9I GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
LguI GCTCTTC 1 cut(s) 659
LmnI GCTCC 4 cut(s) 560, 740, 769, 1614
Lsp1109I GCAGC 9 cut(s) 174, 181, 259, 307, 318, 325, 403, 451, 609
LweI GCATC 1 cut(s) 81
MaeI CTAG 5 cut(s) 369, 947, 1043, 1077, 1466
MaeIII GTNAC 5 cut(s) 8, 543, 1421, 1507, 1579
MalI GATC 8 cut(s) 39, 963, 1020, 1047, 1115, 1121, 1464, 1660
MboI GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
MboII GAAGA 5 cut(s) 475, 593, 646, 736, 739
MfeI CAATTG 2 cut(s) 505, 1636
MflI RGATCY 3 cut(s) 37, 1018, 1113
MlsI TGGCCA 1 cut(s) 1616
MluNI TGGCCA 1 cut(s) 1616
MlyI GAGTC 1 cut(s) 1373
Mox20I TGGCCA 1 cut(s) 1616
MroI TCCGGA 1 cut(s) 1539
MscI TGGCCA 1 cut(s) 1616
MseI TTAA 2 cut(s) 108, 1397
MslI CAYNNNNRTG 2 cut(s) 30, 1137
Msp20I TGGCCA 1 cut(s) 1616
MspA1I CMGCKG 7 cut(s) 151, 187, 331, 643, 681, 1065, 1649
MspI CCGG 5 cut(s) 623, 732, 1016, 1037, 1540
MspR9I CCNGG 1 cut(s) 1613
MunI CAATTG 2 cut(s) 505, 1636
MvaI CCWGG 1 cut(s) 1613
MvnI CGCG 2 cut(s) 712, 1649
MwoI GCNNNNNNNGC 5 cut(s) 22, 196, 340, 603, 649
NdeII GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
NlaIV GGNNCC 4 cut(s) 736, 944, 1020, 1108
NmuCI GTSAC 2 cut(s) 1421, 1579
NspI RCATGY 3 cut(s) 29, 35, 555
PaeI GCATGC 2 cut(s) 29, 555
PaeR7I CTCGAG 1 cut(s) 1123
PciI ACATGT 1 cut(s) 31
PciSI GCTCTTC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 626, 1142
PleI GAGTC 1 cut(s) 1373
PpsI GAGTC 1 cut(s) 1373
PscI ACATGT 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 1428
Psp6I CCWGG 1 cut(s) 1611
PspEI GGTNACC 1 cut(s) 1421
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 1611
PspN4I GGNNCC 4 cut(s) 736, 944, 1020, 1108
PspPI GGNCC 3 cut(s) 942, 1067, 1651
PstI CTGCAG 2 cut(s) 273, 417
PsuI RGATCY 3 cut(s) 37, 1018, 1113
PvuII CAGCTG 3 cut(s) 187, 331, 681
RsaI GTAC 2 cut(s) 1108, 1282
RsaNI GTAC 2 cut(s) 1107, 1281
RseI CAYNNNNRTG 2 cut(s) 30, 1137
SacII CCGCGG 1 cut(s) 1650
SalI GTCGAC 1 cut(s) 1664
SapI GCTCTTC 1 cut(s) 659
SaqAI TTAA 2 cut(s) 108, 1397
Sau3AI GATC 8 cut(s) 37, 961, 1018, 1045, 1113, 1119, 1462, 1658
Sau96I GGNCC 3 cut(s) 942, 1067, 1651
SbfI CCTGCAGG 2 cut(s) 273, 417
SchI GAGTC 1 cut(s) 1373
ScrFI CCNGG 1 cut(s) 1613
SdaI CCTGCAGG 2 cut(s) 273, 417
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 5 cut(s) 269, 413, 826, 985, 1060
Sfr274I CTCGAG 1 cut(s) 1123
Sfr303I CCGCGG 1 cut(s) 1650
SgrBI CCGCGG 1 cut(s) 1650
SlaI CTCGAG 1 cut(s) 1123
SmiMI CAYNNNNRTG 2 cut(s) 30, 1137
SmlI CTYRAG 1 cut(s) 1123
SmoI CTYRAG 1 cut(s) 1123
SphI GCATGC 2 cut(s) 29, 555
Sse8387I CCTGCAGG 2 cut(s) 273, 417
SspMI CTAG 5 cut(s) 369, 947, 1043, 1077, 1466
StyD4I CCNGG 1 cut(s) 1611
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 3 cut(s) 213, 357, 364
TaqI TCGA 6 cut(s) 483, 975, 1124, 1221, 1461, 1665
TauI GCSGC 3 cut(s) 154, 1068, 1256
TfiI GAWTC 2 cut(s) 626, 1142
Tru1I TTAA 2 cut(s) 108, 1397
Tru9I TTAA 2 cut(s) 108, 1397
TscAI CASTG 3 cut(s) 218, 232, 362
TseFI GTSAC 2 cut(s) 1421, 1579
TseI GCWGC 9 cut(s) 169, 187, 247, 295, 313, 331, 391, 439, 597
Tsp45I GTSAC 2 cut(s) 1421, 1579
TspDTI ATGAA 3 cut(s) 1155, 1231, 1590
TspGWI ACGGA 3 cut(s) 930, 1294, 1651
TspRI CASTG 3 cut(s) 218, 232, 362
XapI RAATTY 1 cut(s) 532
XceI RCATGY 3 cut(s) 29, 35, 555
XhoI CTCGAG 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 946
XmiI GTMKAC 2 cut(s) 981, 1665
XspI CTAG 5 cut(s) 369, 947, 1043, 1077, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.