Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

1699693 .. 1700893

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGCACACGACGGCAGCCAATTCCAACGCCGATGAGATCCTATCCCTACGCGTCGAGGGCTTGCTGCCAGAGATGGATGCGAAATACCTCTATGGCTGCTTCAGTGATCACGGCCAGGTTGTAGCTGCCACTGTTTTGCATAATAGATACCGCCTGAAATGGGATATGGATTCTGCCGGTATGATGTGGCGCTGGGATTATGCTTACGAGCGTTGTTCGTACTTTGGTTTTAATGATGCAGGTAGAGAATTGAACGCCAACAAAGCGCTCTTGAGATACAAGCACTTGATACCTGCTGTAAATGAAAAGCCAGCTGCTGCCGCTGCTGCTGCTGGTCAGCAACATCATGAAGGTGAGTCTGATTTAGTAAATCAGAATTGTGAAGCGATTCTCTACGAGGAGTGGTGCAAGGAGAGGTTTCTGTATCTATGTATGGAGGAATTGTCTGCGGAAAATGACGGTTGTTACGTTATCCGCACCCTCAAGATGTCGAACTTGTTATCATGCTCTTGCAAGTTTGATGAAAAGATTGGAAAAATAATCACCTGCCTCCATTGCGCCTCCTGCAACGTGCCATTTGAATTGCAAAAGCGGGCTTGGCTACGCACCACGGACTTCCGCAGCAAGAAAATGAAAATTCCGGAGCAAATGGGTTGCGCTTCTTATACTGGAGGAATCATCCGGGCCGGAGATATTTCCAACGATGATCCCGAGTGGATAAGGCTTCCTTCCGGTATCAAAAGTGGGAAACCGGAGGCCCTGCTGGTTAACGTTGATGGCAGGCTCTATTGTCTCTCTGGTTTACTCATTTGTGAGCCTGTCGTTCATCCGACGTTTGAGATGTACAATCTCCAGTCCGGGATATGGGTGCCTCTGCCGGATCCTCCGTTTTACACACCCGAAGCTCTGAAGTACAAACTCGGTGACCTTAGGCCTGGTACACACTTGTCTTATGCAATCATGGGCACCAAGCTTTTGGTCTCGAGCAAGATCCCTGGTTCTTCCTGGCCCTCACTTTCCCGTTTGTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

346

Amino Acids

38.84

Weight (kDa)

6.16

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	557
Acc36I	ACCTGC	3 cut(s)	233, 304, 557
AccB1I	GGYRCC	2 cut(s)	871, 968
AccII	CGCG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	643
AciI	CCGC	6 cut(s)	154, 324, 452, 478, 595, 622
AclI	AACGTT	1 cut(s)	774
AclWI	GGATC	5 cut(s)	34, 704, 878, 891, 988
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	639
AcuI	CTGAAG	2 cut(s)	88, 932
AfaI	GTAC	4 cut(s)	224, 848, 917, 943
AfeI	AGCGCT	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	163, 867
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	256, 584
AjnI	CCWGG	4 cut(s)	117, 937, 997, 1007
AluBI	AGCT	4 cut(s)	128, 317, 908, 976
AluI	AGCT	4 cut(s)	128, 317, 908, 976
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	800, 988
AlwI	GGATC	5 cut(s)	34, 704, 878, 891, 988
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	713, 985
Aor13HI	TCCGGA	1 cut(s)	643
Aor51HI	AGCGCT	1 cut(s)	270
AoxI	GGCC	5 cut(s)	115, 687, 759, 935, 1010
ApoI	RAATTY	1 cut(s)	639
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	4 cut(s)	195, 271, 563, 662
AspS9I	GGNCC	3 cut(s)	687, 760, 1011
AsuC2I	CCSGG	2 cut(s)	686, 862
AsuHPI	GGTGA	3 cut(s)	368, 538, 938
AvaI	CYCGRG	2 cut(s)	713, 985
AxyI	CCTNAGG	1 cut(s)	932
BaeGI	GKGCMC	1 cut(s)	971
BamHI	GGATCC	1 cut(s)	883
BanI	GGYRCC	2 cut(s)	871, 968
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	70, 773
BceAI	ACGGC	2 cut(s)	30, 130
BciT130I	CCWGG	4 cut(s)	119, 939, 999, 1009
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	686, 862
BcoDI	GTCTC	2 cut(s)	800, 988
BfoI	RGCGCY	2 cut(s)	196, 272
BfuAI	ACCTGC	3 cut(s)	233, 304, 557
Bme1390I	CCNGG	6 cut(s)	119, 686, 862, 939, 999, 1009
BmeT110I	CYCGRG	2 cut(s)	713, 985
BmgT120I	GGNCC	3 cut(s)	687, 760, 1011
BmiI	GGNNCC	3 cut(s)	873, 885, 970
BmrFI	CCNGG	6 cut(s)	119, 686, 862, 939, 999, 1009
BmsI	GCATC	2 cut(s)	70, 229
BpmI	CTGGAG	2 cut(s)	693, 839
BpuEI	CTTGAG	2 cut(s)	295, 470
BpuMI	CCSGG	2 cut(s)	686, 862
BsaI	GGTCTC	1 cut(s)	988
BsaJI	CCNNGG	2 cut(s)	612, 997
BsaWI	WCCGGW	3 cut(s)	643, 734, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 867
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	676, 856
Bse21I	CCTNAGG	1 cut(s)	932
Bse3DI	GCAATG	1 cut(s)	556
BseAI	TCCGGA	1 cut(s)	643
BseBI	CCWGG	4 cut(s)	119, 939, 999, 1009
BseDI	CCNNGG	2 cut(s)	612, 997
BseGI	GGATG	3 cut(s)	85, 681, 829
BseLI	CCNNNNNNNGG	2 cut(s)	163, 867
BseMI	GCAATG	1 cut(s)	556
BseNI	ACTGG	2 cut(s)	676, 856
BseRI	GAGGAG	1 cut(s)	416
BseSI	GKGCMC	1 cut(s)	971
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	5 cut(s)	117, 689, 761, 937, 1012
BshNI	GGYRCC	2 cut(s)	871, 968
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	713, 985
BsiSI	CCGG	8 cut(s)	180, 644, 685, 690, 735, 755, 861, 881
BslI	CCNNNNNNNGG	2 cut(s)	163, 867
BsmAI	GTCTC	2 cut(s)	800, 988
BsnI	GGCC	5 cut(s)	117, 689, 761, 937, 1012
Bso31I	GGTCTC	1 cut(s)	988
BsoBI	CYCGRG	2 cut(s)	713, 985
Bsp1286I	GDGCHC	2 cut(s)	9, 971
Bsp13I	TCCGGA	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	846
Bsp143I	GATC	5 cut(s)	39, 109, 709, 883, 993
BspACI	CCGC	6 cut(s)	154, 324, 452, 478, 595, 622
BspANI	GGCC	5 cut(s)	117, 689, 761, 937, 1012
BspEI	TCCGGA	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	873, 885, 970
BspMI	ACCTGC	3 cut(s)	233, 304, 557
BspPI	GGATC	5 cut(s)	34, 704, 878, 891, 988
BspT107I	GGYRCC	2 cut(s)	871, 968
BspTNI	GGTCTC	1 cut(s)	988
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	846
BsrI	ACTGG	2 cut(s)	676, 856
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	612, 997
BssMI	GATC	5 cut(s)	39, 109, 709, 883, 993
Bst2UI	CCWGG	4 cut(s)	119, 939, 999, 1009
Bst4CI	ACNGT	2 cut(s)	136, 464
BstAUI	TGTACA	1 cut(s)	846
BstC8I	GCNNGC	4 cut(s)	65, 315, 597, 785
BstDEI	CTNAG	1 cut(s)	932
BstDSI	CCRYGG	1 cut(s)	612
BstEII	GGTNACC	1 cut(s)	926
BstF5I	GGATG	3 cut(s)	85, 681, 829
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	196, 272
BstHHI	GCGC	4 cut(s)	195, 271, 563, 662
BstKTI	GATC	5 cut(s)	42, 112, 712, 886, 996
BstMAI	GTCTC	2 cut(s)	800, 988
BstMBI	GATC	5 cut(s)	39, 109, 709, 883, 993
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 266, 323, 326, 329, 332, 558, 567, 601
BstNI	CCWGG	4 cut(s)	119, 939, 999, 1009
BstPI	GGTNACC	1 cut(s)	926
BstSCI	CCNGG	6 cut(s)	117, 684, 860, 937, 997, 1007
BstSLI	GKGCMC	1 cut(s)	971
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	3 cut(s)	39, 883, 993
BstXI	CCANNNNNNTGG	1 cut(s)	979
BstYI	RGATCY	3 cut(s)	39, 883, 993
Bsu36I	CCTNAGG	1 cut(s)	932
BsuRI	GGCC	5 cut(s)	117, 689, 761, 937, 1012
BtgI	CCRYGG	1 cut(s)	612
BtsCI	GGATG	3 cut(s)	85, 681, 829
BtsIMutI	CAGTG	2 cut(s)	112, 132
BveI	ACCTGC	3 cut(s)	233, 304, 557
Cac8I	GCNNGC	4 cut(s)	65, 315, 597, 785
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	4 cut(s)	195, 271, 563, 662
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	3 cut(s)	687, 760, 1011
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	4 cut(s)	223, 847, 916, 942
CviAII	CATG	3 cut(s)	350, 507, 964
CviQI	GTAC	4 cut(s)	223, 847, 916, 942
DdeI	CTNAG	1 cut(s)	932
DpnI	GATC	5 cut(s)	41, 111, 711, 885, 995
DpnII	GATC	5 cut(s)	39, 109, 709, 883, 993
EaeI	YGGCCR	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	937
Eco31I	GGTCTC	1 cut(s)	988
Eco47III	AGCGCT	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	88, 932
Eco81I	CCTNAGG	1 cut(s)	932
Eco88I	CYCGRG	2 cut(s)	713, 985
Eco91I	GGTNACC	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	760
EcoO65I	GGTNACC	1 cut(s)	926
EcoRII	CCWGG	4 cut(s)	117, 937, 997, 1007
FaeI	CATG	3 cut(s)	353, 510, 967
FalI	AAGNNNNNCTT	2 cut(s)	715, 747
FatI	CATG	3 cut(s)	349, 506, 963
FauI	CCCGC	1 cut(s)	588
FbaI	TGATCA	1 cut(s)	109
FokI	GGATG	3 cut(s)	92, 668, 816
GlaI	GCGC	4 cut(s)	194, 270, 562, 661
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	2 cut(s)	693, 839
HaeII	RGCGCY	2 cut(s)	196, 272
HaeIII	GGCC	5 cut(s)	117, 689, 761, 937, 1012
HapII	CCGG	8 cut(s)	180, 644, 685, 690, 735, 755, 861, 881
HgaI	GACGC	1 cut(s)	43
HhaI	GCGC	4 cut(s)	195, 271, 563, 662
Hin1II	CATG	3 cut(s)	353, 510, 967
Hin6I	GCGC	4 cut(s)	193, 269, 561, 660
HinP1I	GCGC	4 cut(s)	193, 269, 561, 660
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	4 cut(s)	173, 359, 391, 678
HpaI	GTTAAC	1 cut(s)	772
HpaII	CCGG	8 cut(s)	180, 644, 685, 690, 735, 755, 861, 881
HphI	GGTGA	3 cut(s)	368, 538, 938
Hpy166II	GTNNAC	3 cut(s)	772, 806, 944
Hpy188I	TCNGA	4 cut(s)	364, 378, 834, 912
Hpy188III	TCNNGA	6 cut(s)	274, 350, 487, 644, 713, 985
Hpy8I	GTNNAC	3 cut(s)	772, 806, 944
Hpy99I	CGWCG	3 cut(s)	16, 59, 838
HpyAV	CCTTC	2 cut(s)	347, 741
HpyCH4III	ACNGT	2 cut(s)	136, 464
HpyCH4IV	ACGT	4 cut(s)	471, 573, 774, 836
HpyCH4V	TGCA	7 cut(s)	142, 242, 411, 516, 570, 589, 959
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 266, 323, 326, 329, 332, 558, 567, 601
HpyF3I	CTNAG	1 cut(s)	932
HpySE526I	ACGT	4 cut(s)	471, 573, 774, 836
Hsp92II	CATG	3 cut(s)	353, 510, 967
HspAI	GCGC	4 cut(s)	193, 269, 561, 660
Kpn2I	TCCGGA	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	109
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	5 cut(s)	39, 109, 709, 883, 993
LmnI	GCTCC	2 cut(s)	4, 646
LweI	GCATC	2 cut(s)	70, 229
MaeII	ACGT	4 cut(s)	471, 573, 774, 836
MaeIII	GTNAC	2 cut(s)	467, 926
MalI	GATC	5 cut(s)	41, 111, 711, 885, 995
MboI	GATC	5 cut(s)	39, 109, 709, 883, 993
MboII	GAAGA	1 cut(s)	996
MflI	RGATCY	3 cut(s)	39, 883, 993
MhlI	GDGCHC	2 cut(s)	9, 971
MluCI	AATT	6 cut(s)	22, 251, 379, 443, 584, 639
MluI	ACGCGT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	3 cut(s)	51, 726, 857
MroI	TCCGGA	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	234, 771
MslI	CAYNNNNRTG	1 cut(s)	354
MspA1I	CMGCKG	2 cut(s)	317, 326
MspI	CCGG	8 cut(s)	180, 644, 685, 690, 735, 755, 861, 881
MspR9I	CCNGG	6 cut(s)	119, 686, 862, 939, 999, 1009
MvaI	CCWGG	4 cut(s)	119, 939, 999, 1009
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	9 cut(s)	60, 266, 323, 326, 329, 332, 558, 567, 601
NciI	CCSGG	2 cut(s)	686, 862
NdeII	GATC	5 cut(s)	39, 109, 709, 883, 993
NlaIII	CATG	3 cut(s)	353, 510, 967
NlaIV	GGNNCC	3 cut(s)	873, 885, 970
NmuCI	GTSAC	1 cut(s)	926
PaeR7I	CTCGAG	1 cut(s)	985
PagI	TCATGA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	557
PceI	AGGCCT	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 711
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	173, 391, 678
PfoI	TCCNGGA	1 cut(s)	860
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
Psp1406I	AACGTT	1 cut(s)	774
Psp6I	CCWGG	4 cut(s)	117, 937, 997, 1007
PspEI	GGTNACC	1 cut(s)	926
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	4 cut(s)	117, 937, 997, 1007
PspN4I	GGNNCC	3 cut(s)	873, 885, 970
PspPI	GGNCC	3 cut(s)	687, 760, 1011
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	3 cut(s)	39, 883, 993
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	4 cut(s)	224, 848, 917, 943
RsaNI	GTAC	4 cut(s)	223, 847, 916, 942
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	234, 771
Sau3AI	GATC	5 cut(s)	39, 109, 709, 883, 993
Sau96I	GGNCC	3 cut(s)	687, 760, 1011
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	6 cut(s)	119, 686, 862, 939, 999, 1009
SduI	GDGCHC	2 cut(s)	9, 971
SfaNI	GCATC	2 cut(s)	70, 229
Sfr274I	CTCGAG	1 cut(s)	985
SlaI	CTCGAG	1 cut(s)	985
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	3 cut(s)	274, 485, 985
SmoI	CTYRAG	3 cut(s)	274, 485, 985
Sse9I	AATT	6 cut(s)	22, 251, 379, 443, 584, 639
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	6 cut(s)	154, 324, 452, 478, 595, 622
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	6 cut(s)	117, 684, 860, 937, 997, 1007
TaaI	ACNGT	2 cut(s)	136, 464
TaiI	ACGT	4 cut(s)	474, 576, 777, 839
TaqI	TCGA	3 cut(s)	57, 494, 986
TasI	AATT	6 cut(s)	22, 251, 379, 443, 584, 639
TatI	WGTACW	2 cut(s)	846, 915
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	173, 391, 678
Tru1I	TTAA	2 cut(s)	234, 771
Tru9I	TTAA	2 cut(s)	234, 771
TscAI	CASTG	2 cut(s)	112, 139
TseFI	GTSAC	1 cut(s)	926
Tsp45I	GTSAC	1 cut(s)	926
TspDTI	ATGAA	5 cut(s)	321, 366, 540, 650, 818
TspGWI	ACGGA	2 cut(s)	629, 879
TspRI	CASTG	2 cut(s)	112, 139
XapI	RAATTY	1 cut(s)	639
XhoI	CTCGAG	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.