Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

22258496 .. 22261003

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0131100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTCCAAGAGGCGGCGCCGCCGTGTTGGCCGGCGGGGGTGAGTCAGTCGACGTCGTCGTCGGCGCGGTGGACTCGACCGGAGGACAAGCTGTTCGAGCAGGCGCTGGTGAGGTTCTCCGAGGACTTGCCGGATCGGTGGGAGCGGATCGCCGAGATGGTGCCGGGGAAGAGCGCCGAGGAGGTTCTGGAGCACTATGAGACTCTGGTGCATGATGTTGTGGAGATTGACTCCGGCCGGGTCGAGTTGCCGAGTTACACTGATGACTCGGTGGTCGGGTGGGACACGTCGAGTCAGATCTCTTTTGATGGTTGCAAGAATAATAATAATAACGGCGGCGGCGGCGGTGAGGCAGCCGAGAGGAAGAAGGGAAAGCCGTGGACTGAAATTGAACACAAATTGTTTCTGGTAGGACTAAAGCAATTTGGTAAGGGTGATTGGAGAAGCATTTCAAGAAATGTAGTTGTGACAAGAACACCCACACAAGTGGCTAGTCATGCTCAAAAATATTTCCTTCGCCAAAGCTCTGGGAAAAAGGAAAGGAAAAGATCAAGCATTCATGACATAACCTCAGTAGAGACAAACTCGGTGCCTGCGCCTGCTGAACGCAAGTGGATTCCTGCACCTCCACCTCCACCTGGTGATCAAGGTGGTTCATTTGGGTTTCCAGATTTTGGTTTTCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

229

Amino Acids

25.41

Weight (kDa)

6.0

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	23 - 69	3.3e-07	Myb-like DNA-binding domain
Myb_DNA-binding_2	PF23082	23 - 69	9.1e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	125 - 171	1.4e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	58, 272
AatII	GACGTC	1 cut(s)	56
AccB1I	GGYRCC	3 cut(s)	16, 160, 589
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	1 cut(s)	67
AciI	CCGC	9 cut(s)	14, 20, 35, 67, 145, 336, 339, 342, 345
AclWI	GGATC	2 cut(s)	141, 155
AcoI	YGGCCR	2 cut(s)	29, 235
AcyI	GRCGYC	2 cut(s)	17, 53
AdeI	CACNNNGTG	1 cut(s)	641
AfiI	CCNNNNNNNGG	3 cut(s)	13, 638, 674
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	392, 453
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	1 cut(s)	637
AleI	CACNNNNGTG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	2 cut(s)	91, 525
AluI	AGCT	2 cut(s)	91, 525
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	194, 572
AlwI	GGATC	2 cut(s)	141, 155
AlwNI	CAGNNNCTG	1 cut(s)	106
AoxI	GGCC	2 cut(s)	29, 235
ApeKI	GCWGC	1 cut(s)	353
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	5 cut(s)	19, 67, 106, 176, 598
AsuC2I	CCSGG	2 cut(s)	165, 239
AsuHPI	GGTGA	5 cut(s)	52, 121, 359, 446, 653
BanI	GGYRCC	3 cut(s)	16, 160, 589
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	2 cut(s)	151, 302
BceAI	ACGGC	3 cut(s)	7, 349, 361
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	1 cut(s)	643
BcnI	CCSGG	2 cut(s)	165, 239
BcoDI	GTCTC	2 cut(s)	194, 572
BfaI	CTAG	1 cut(s)	492
BfoI	RGCGCY	3 cut(s)	20, 107, 177
BglI	GCCNNNNNGGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	297
BisI	GCNGC	6 cut(s)	15, 20, 337, 340, 343, 354
BlsI	GCNGC	6 cut(s)	16, 21, 338, 341, 344, 355
Bme1390I	CCNGG	3 cut(s)	165, 239, 639
BmgBI	CACGTC	1 cut(s)	288
BmiI	GGNNCC	3 cut(s)	18, 162, 591
BmrFI	CCNGG	3 cut(s)	165, 239, 639
BplI	GAGNNNNNCTC	4 cut(s)	215, 247, 569, 601
BpmI	CTGGAG	1 cut(s)	209
BpuMI	CCSGG	2 cut(s)	165, 239
BsaHI	GRCGYC	2 cut(s)	17, 53
BsaJI	CCNNGG	4 cut(s)	120, 164, 177, 377
BsaWI	WCCGGW	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 638, 674
Bse118I	RCCGGY	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	4 cut(s)	120, 164, 177, 377
BseLI	CCNNNNNNNGG	3 cut(s)	13, 638, 674
BseMII	CTCAG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	194
BseX3I	CGGCCG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	606
Bsh1236I	CGCG	1 cut(s)	67
Bsh1285I	CGRYCG	2 cut(s)	80, 238
BshFI	GGCC	2 cut(s)	31, 237
BshNI	GGYRCC	3 cut(s)	16, 160, 589
BsiEI	CGRYCG	2 cut(s)	80, 238
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	6 cut(s)	32, 80, 131, 164, 234, 238
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	13, 638, 674
BsmAI	GTCTC	2 cut(s)	194, 572
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	31, 237
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	133, 147, 297, 548, 643
BspACI	CCGC	9 cut(s)	14, 20, 35, 67, 145, 336, 339, 342, 345
BspANI	GGCC	2 cut(s)	31, 237
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	67
BspHI	TCATGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	18, 162, 591
BspPI	GGATC	2 cut(s)	141, 155
BspQI	GCTCTTC	1 cut(s)	164
BspT107I	GGYRCC	3 cut(s)	16, 160, 589
BsrBI	CCGCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	4 cut(s)	120, 164, 177, 377
BssMI	GATC	5 cut(s)	133, 147, 297, 548, 643
BssNI	GRCGYC	2 cut(s)	17, 53
Bst2UI	CCWGG	1 cut(s)	639
Bst6I	CTCTTC	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	17, 53
BstC8I	GCNNGC	4 cut(s)	33, 102, 594, 600
BstDEI	CTNAG	1 cut(s)	571
BstDSI	CCRYGG	1 cut(s)	377
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	3 cut(s)	20, 107, 177
BstHHI	GCGC	5 cut(s)	19, 67, 106, 176, 598
BstKTI	GATC	5 cut(s)	136, 150, 300, 551, 646
BstMAI	GTCTC	2 cut(s)	194, 572
BstMBI	GATC	5 cut(s)	133, 147, 297, 548, 643
BstMCI	CGRYCG	2 cut(s)	80, 238
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 97, 342, 497
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	3 cut(s)	163, 237, 637
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	2 cut(s)	487, 527
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	31, 237
BtgI	CCRYGG	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	33, 102, 594, 600
CaiI	CAGNNNCTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	559
CfoI	GCGC	5 cut(s)	19, 67, 106, 176, 598
Cfr10I	RCCGGY	1 cut(s)	31
CsiI	ACCWGGT	1 cut(s)	637
CviAII	CATG	3 cut(s)	212, 497, 560
CviJI	RGCY	7 cut(s)	31, 91, 237, 356, 376, 491, 525
CviKI_1	RGCY	7 cut(s)	31, 91, 237, 356, 376, 491, 525
DdeI	CTNAG	1 cut(s)	571
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	5 cut(s)	135, 149, 299, 550, 645
DpnII	GATC	5 cut(s)	133, 147, 297, 548, 643
DraIII	CACNNNGTG	1 cut(s)	641
DrdI	GACNNNNNNGTC	2 cut(s)	58, 272
DseDI	GACNNNNNNGTC	2 cut(s)	58, 272
EaeI	YGGCCR	2 cut(s)	29, 235
EagI	CGGCCG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	637
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
FaeI	CATG	3 cut(s)	215, 500, 563
FaiI	YATR	5 cut(s)	198, 213, 498, 561, 566
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	3 cut(s)	211, 496, 559
FauI	CCCGC	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	15, 20, 337, 340, 343, 354
Fsp4HI	GCNGC	6 cut(s)	15, 20, 337, 340, 343, 354
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	5 cut(s)	18, 66, 105, 175, 597
GluI	GCNGC	6 cut(s)	15, 20, 337, 340, 343, 354
GsuI	CTGGAG	1 cut(s)	209
HaeII	RGCGCY	3 cut(s)	20, 107, 177
HaeIII	GGCC	2 cut(s)	31, 237
HapII	CCGG	6 cut(s)	32, 80, 131, 164, 234, 238
HhaI	GCGC	5 cut(s)	19, 67, 106, 176, 598
Hin1I	GRCGYC	2 cut(s)	17, 53
Hin1II	CATG	3 cut(s)	215, 500, 563
Hin6I	GCGC	5 cut(s)	17, 65, 104, 174, 596
HinP1I	GCGC	5 cut(s)	17, 65, 104, 174, 596
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	7 cut(s)	43, 73, 202, 230, 266, 292, 616
HpaII	CCGG	6 cut(s)	32, 80, 131, 164, 234, 238
HphI	GGTGA	5 cut(s)	52, 121, 359, 446, 653
Hpy166II	GTNNAC	3 cut(s)	51, 72, 381
Hpy188I	TCNGA	2 cut(s)	121, 297
Hpy188III	TCNNGA	4 cut(s)	188, 453, 560, 668
Hpy8I	GTNNAC	3 cut(s)	51, 72, 381
Hpy99I	CGWCG	5 cut(s)	55, 58, 61, 64, 292
HpyAV	CCTTC	2 cut(s)	361, 524
HpyCH4IV	ACGT	2 cut(s)	53, 287
HpyCH4V	TGCA	3 cut(s)	211, 315, 623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 97, 342, 497
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	2 cut(s)	53, 287
Hsp92I	GRCGYC	2 cut(s)	17, 53
Hsp92II	CATG	3 cut(s)	215, 500, 563
HspAI	GCGC	5 cut(s)	17, 65, 104, 174, 596
KasI	GGCGCC	1 cut(s)	16
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	133, 147, 297, 548, 643
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	142, 190
Lsp1109I	GCAGC	1 cut(s)	365
MabI	ACCWGGT	1 cut(s)	637
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	2 cut(s)	53, 287
MaeIII	GTNAC	2 cut(s)	254, 466
MalI	GATC	5 cut(s)	135, 149, 299, 550, 645
MbiI	CCGCTC	1 cut(s)	145
MboI	GATC	5 cut(s)	133, 147, 297, 548, 643
MboII	GAAGA	2 cut(s)	181, 376
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	3 cut(s)	387, 398, 422
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	6 cut(s)	52, 67, 196, 224, 260, 301
MroNI	GCCGGC	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	6 cut(s)	32, 80, 131, 164, 234, 238
MspR9I	CCNGG	3 cut(s)	165, 239, 639
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	4 cut(s)	28, 97, 342, 497
NaeI	GCCGGC	1 cut(s)	33
NarI	GGCGCC	1 cut(s)	17
NciI	CCSGG	2 cut(s)	165, 239
NdeII	GATC	5 cut(s)	133, 147, 297, 548, 643
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	215, 500, 563
NlaIV	GGNNCC	3 cut(s)	18, 162, 591
NmeAIII	GCCGAG	4 cut(s)	178, 202, 276, 382
NmuCI	GTSAC	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	485
PagI	TCATGA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	1 cut(s)	555
PdiI	GCCGGC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	616
PflFI	GACNNNGTC	1 cut(s)	55
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	6 cut(s)	16, 21, 338, 341, 344, 355
PleI	GAGTC	6 cut(s)	51, 67, 196, 224, 260, 300
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	6 cut(s)	51, 67, 196, 224, 260, 300
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	3 cut(s)	18, 162, 591
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	485
SalI	GTCGAC	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	164
SatI	GCNGC	6 cut(s)	15, 20, 337, 340, 343, 354
Sau3AI	GATC	5 cut(s)	133, 147, 297, 548, 643
SchI	GAGTC	6 cut(s)	52, 67, 196, 224, 260, 301
ScrFI	CCNGG	3 cut(s)	165, 239, 639
SduI	GDGCHC	1 cut(s)	195
SexAI	ACCWGGT	1 cut(s)	637
SfoI	GGCGCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	3 cut(s)	387, 398, 422
SsiI	CCGC	9 cut(s)	14, 20, 35, 67, 145, 336, 339, 342, 345
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	509
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	3 cut(s)	163, 237, 637
TaiI	ACGT	2 cut(s)	56, 290
TaqI	TCGA	5 cut(s)	50, 76, 96, 243, 290
TasI	AATT	3 cut(s)	387, 398, 422
TauI	GCSGC	5 cut(s)	17, 22, 339, 342, 345
TfiI	GAWTC	1 cut(s)	616
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	548, 645
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	55
Van91I	CCANNNNNTGG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.