Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

39183458 .. 39188695

Gene Structure 5238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00314970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCAGCAACCTCAGGAGTCGACGCCGGCAGCGGATGAGATTCGCTCCTTACGGGTCGACGGCTTGATTCCGAGGATGGGTGAGATGTATCTCTACAACTGCTTCAGTGACTGCGCAGAGGTTTTGGCTGCAACAGTTTTGCGGAAAGTGCAAACCGGATGGCAGGAAAATCATGGTTTTGTCGAGTTTGCTTCTCACAGTGTGGCTGAGTTTGTCTTGAGCTCCTACAATGGTGAGCTCATGCCCAACCACAATAATCGGAGATTTTACCTGAGCTGGGACACTGATGGTTACGGTACAAGGTGGCGCTGGGATCCTGTTTACCAGCAATGGTCTTTCTTTGGTTATGCTGAGCACGGTGGTATGTTGGATGCCAAGACAGTGATCGAGTTGTACAAGGACTGCATACCTGTTGTTACTGAAAAGCCATCTGGTAGTGCTCAGCAATATTCACAAGAACCAGCTAGTACAGACAAAGTGGAATGGTTATGGTCATGCTGGCTCTATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

170

Amino Acids

19.63

Weight (kDa)

4.82

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 84	1.9e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
AccI	GTMKAC	2 cut(s)	20, 57
AciI	CCGC	2 cut(s)	32, 142
AclWI	GGATC	2 cut(s)	308, 321
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	298, 395, 469
AfiI	CCNNNNNNNGG	2 cut(s)	77, 277
AluBI	AGCT	4 cut(s)	222, 238, 276, 464
AluI	AGCT	4 cut(s)	222, 238, 276, 464
Alw21I	GWGCWC	4 cut(s)	224, 240, 357, 442
AlwI	GGATC	2 cut(s)	308, 321
AlwNI	CAGNNNCTG	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	4, 29, 128
AspLEI	GCGC	2 cut(s)	116, 309
AsuHPI	GGTGA	2 cut(s)	92, 245
AxyI	CCTNAGG	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	224, 240
Bbv12I	GWGCWC	4 cut(s)	224, 240, 357, 442
BbvI	GCAGC	3 cut(s)	16, 41, 115
BccI	CCATC	4 cut(s)	70, 153, 281, 436
BceAI	ACGGC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	3 cut(s)	5, 30, 129
BlpI	GCTNAGC	2 cut(s)	351, 441
BlsI	GCNGC	3 cut(s)	6, 31, 130
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu1102I	GCTNAGC	2 cut(s)	351, 441
BpuEI	CTTGAG	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 277
Bse118I	RCCGGY	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	4 cut(s)	40, 81, 164, 376
BseLI	CCNNNNNNNGG	2 cut(s)	77, 277
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	5 cut(s)	26, 198, 263, 342, 455
BseXI	GCAGC	3 cut(s)	16, 41, 115
BseYI	CCCAGC	2 cut(s)	276, 309
BsiHKAI	GWGCWC	4 cut(s)	224, 240, 357, 442
BsiSI	CCGG	2 cut(s)	26, 156
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	77, 277
BsmFI	GGGAC	1 cut(s)	293
Bsp1286I	GDGCHC	4 cut(s)	224, 240, 357, 442
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	313, 384
Bsp1720I	GCTNAGC	2 cut(s)	351, 441
BspACI	CCGC	2 cut(s)	32, 142
BspCNI	CTCAG	5 cut(s)	25, 199, 264, 343, 454
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	308, 321
BsrDI	GCAATG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	2 cut(s)	313, 384
BssNI	GRCGYC	1 cut(s)	23
Bst4CI	ACNGT	5 cut(s)	136, 200, 296, 359, 382
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	27, 500
BstDEI	CTNAG	5 cut(s)	12, 207, 272, 351, 441
BstF5I	GGATG	4 cut(s)	40, 81, 164, 376
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	116, 309
BstKTI	GATC	2 cut(s)	316, 387
BstMBI	GATC	2 cut(s)	313, 384
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	16, 41, 115
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
Bsu36I	CCTNAGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	40, 81, 164, 376
BtsIMutI	CAGTG	4 cut(s)	112, 205, 282, 387
Cac8I	GCNNGC	2 cut(s)	27, 500
CaiI	CAGNNNCTG	1 cut(s)	111
CfoI	GCGC	2 cut(s)	116, 309
Cfr10I	RCCGGY	1 cut(s)	25
CseI	GACGC	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	297, 394, 468
CviAII	CATG	3 cut(s)	173, 241, 495
CviJI	RGCY	9 cut(s)	63, 128, 206, 222, 238, 276, 427, 464, 502
CviKI_1	RGCY	9 cut(s)	63, 128, 206, 222, 238, 276, 427, 464, 502
CviQI	GTAC	3 cut(s)	297, 394, 468
DdeI	CTNAG	5 cut(s)	12, 207, 272, 351, 441
DpnI	GATC	2 cut(s)	315, 386
DpnII	GATC	2 cut(s)	313, 384
DraIII	CACNNNGTG	1 cut(s)	202
Ecl136II	GAGCTC	2 cut(s)	222, 238
Eco24I	GRGCYC	2 cut(s)	224, 240
Eco53kI	GAGCTC	2 cut(s)	222, 238
Eco57I	CTGAAG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	12
EcoICRI	GAGCTC	2 cut(s)	222, 238
EcoT38I	GRGCYC	2 cut(s)	224, 240
FaeI	CATG	3 cut(s)	176, 244, 498
FaiI	YATR	8 cut(s)	174, 242, 348, 365, 407, 490, 496, 507
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	3 cut(s)	172, 240, 494
FblI	GTMKAC	2 cut(s)	20, 57
Fnu4HI	GCNGC	3 cut(s)	5, 30, 129
FokI	GGATG	4 cut(s)	47, 88, 171, 383
FriOI	GRGCYC	2 cut(s)	224, 240
Fsp4HI	GCNGC	3 cut(s)	5, 30, 129
FspBI	CTAG	1 cut(s)	465
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 308
GluI	GCNGC	3 cut(s)	5, 30, 129
GsaI	CCCAGC	2 cut(s)	280, 313
HaeII	RGCGCY	1 cut(s)	310
HapII	CCGG	2 cut(s)	26, 156
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	116, 309
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	176, 244, 498
Hin6I	GCGC	2 cut(s)	114, 307
HinP1I	GCGC	2 cut(s)	114, 307
HincII	GTYRAC	2 cut(s)	21, 58
HindII	GTYRAC	2 cut(s)	21, 58
HinfI	GANTC	3 cut(s)	17, 40, 67
HpaII	CCGG	2 cut(s)	26, 156
HphI	GGTGA	2 cut(s)	92, 245
Hpy166II	GTNNAC	3 cut(s)	21, 58, 322
Hpy188I	TCNGA	2 cut(s)	72, 261
Hpy188III	TCNNGA	2 cut(s)	14, 217
Hpy8I	GTNNAC	3 cut(s)	21, 58, 322
Hpy99I	CGWCG	2 cut(s)	25, 62
HpyCH4III	ACNGT	5 cut(s)	136, 200, 296, 359, 382
HpyCH4V	TGCA	4 cut(s)	4, 131, 151, 405
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	5 cut(s)	12, 207, 272, 351, 441
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	176, 244, 498
HspAI	GCGC	2 cut(s)	114, 307
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	313, 384
LmnI	GCTCC	2 cut(s)	50, 227
Lsp1109I	GCAGC	3 cut(s)	16, 41, 115
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	3 cut(s)	107, 290, 415
MalI	GATC	2 cut(s)	315, 386
MboI	GATC	2 cut(s)	313, 384
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	4 cut(s)	224, 240, 357, 442
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	3 cut(s)	21, 66, 112
MroNI	GCCGGC	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	26, 156
MwoI	GCNNNNNNNGC	1 cut(s)	148
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	2 cut(s)	313, 384
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	3 cut(s)	176, 244, 498
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	2 cut(s)	40, 67
PkrI	GCNGC	3 cut(s)	6, 31, 130
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	2 cut(s)	224, 240
PspFI	CCCAGC	2 cut(s)	276, 309
PspN4I	GGNNCC	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	3 cut(s)	298, 395, 469
RsaNI	GTAC	3 cut(s)	297, 394, 468
SacI	GAGCTC	2 cut(s)	224, 240
SalI	GTCGAC	2 cut(s)	19, 56
SatI	GCNGC	3 cut(s)	5, 30, 129
Sau3AI	GATC	2 cut(s)	313, 384
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	4 cut(s)	224, 240, 357, 442
SetI	ASST	9 cut(s)	13, 123, 224, 240, 273, 278, 305, 412, 466
SfaNI	GCATC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SsiI	CCGC	2 cut(s)	32, 142
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	1 cut(s)	465
SstI	GAGCTC	2 cut(s)	224, 240
TaaI	ACNGT	5 cut(s)	136, 200, 296, 359, 382
TaqI	TCGA	4 cut(s)	20, 57, 183, 387
TatI	WGTACW	2 cut(s)	393, 467
TfiI	GAWTC	2 cut(s)	40, 67
TscAI	CASTG	4 cut(s)	112, 205, 289, 387
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	4, 29, 128
Tsp45I	GTSAC	1 cut(s)	107
TspRI	CASTG	4 cut(s)	112, 205, 289, 387
XmiI	GTMKAC	2 cut(s)	20, 57
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.