Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

66748535 .. 66748858

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG447500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGCATGCAGCTGCCTACCCAAGTTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCACTGGAGAAGAAGCTGTATCTATGTTTCAATGAGCGCAATGACCAAAGCAATTGTTGTTACGTTCTCCGCACCATCAATTTGTCCGAGTTACTTGCATGCTCCTGTGAGTTTAGCAGCGATACTGAAGAAATAACCAAGCAGCTATTGCACCCTCCAAAGCCAAACCGGAATCTCAGTTGCGCCAGCGGGCTTGGCTCTTCGCCAGCGAGAAAGTTCCCTTCAGCTGCGATAGCGCCGAGGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

107

Amino Acids

11.96

Weight (kDa)

8.18

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	42
AciI	CCGC	2 cut(s)	145, 264
AcuI	CTGAAG	2 cut(s)	222, 282
AgsI	TTSAA	1 cut(s)	106
AluBI	AGCT	4 cut(s)	13, 91, 220, 302
AluI	AGCT	4 cut(s)	13, 91, 220, 302
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	6 cut(s)	10, 13, 61, 192, 217, 302
AspLEI	GCGC	3 cut(s)	114, 260, 313
BbvI	GCAGC	5 cut(s)	22, 73, 204, 229, 289
BccI	CCATC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	35
BfoI	RGCGCY	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	6 cut(s)	11, 14, 62, 193, 218, 303
BlsI	GCNGC	6 cut(s)	12, 15, 63, 194, 219, 304
BpmI	CTGGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	84
BseXI	GCAGC	5 cut(s)	22, 73, 204, 229, 289
BshFI	GGCC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	74
BspACI	CCGC	2 cut(s)	145, 264
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	84
BssECI	CCNNGG	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstC8I	GCNNGC	6 cut(s)	8, 39, 175, 262, 266, 282
BstDEI	CTNAG	1 cut(s)	251
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	3 cut(s)	114, 260, 313
BstMAI	GTCTC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 270, 308
BstNSI	RCATGY	2 cut(s)	10, 177
BstSFI	CTRYAG	1 cut(s)	35
BstV1I	GCAGC	5 cut(s)	22, 73, 204, 229, 289
BstXI	CCANNNNNNTGG	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	6 cut(s)	8, 39, 175, 262, 266, 282
CfoI	GCGC	3 cut(s)	114, 260, 313
CviAII	CATG	3 cut(s)	7, 65, 174
CviJI	RGCY	9 cut(s)	13, 41, 91, 220, 238, 268, 273, 302, 319
CviKI_1	RGCY	9 cut(s)	13, 41, 91, 220, 238, 268, 273, 302, 319
DdeI	CTNAG	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	280
EarI	CTCTTC	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	222, 282
FaeI	CATG	3 cut(s)	10, 68, 177
FaiI	YATR	6 cut(s)	8, 48, 66, 100, 175, 322
FatI	CATG	3 cut(s)	6, 64, 173
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	6 cut(s)	11, 14, 62, 193, 218, 303
Fsp4HI	GCNGC	6 cut(s)	11, 14, 62, 193, 218, 303
GlaI	GCGC	3 cut(s)	113, 259, 312
GluI	GCNGC	6 cut(s)	11, 14, 62, 193, 218, 303
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	244
HhaI	GCGC	3 cut(s)	114, 260, 313
Hin1II	CATG	3 cut(s)	10, 68, 177
Hin6I	GCGC	3 cut(s)	112, 258, 311
HinP1I	GCGC	3 cut(s)	112, 258, 311
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	6, 10, 37, 173, 226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 270, 308
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	10, 68, 177
HspAI	GCGC	3 cut(s)	112, 258, 311
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	9 cut(s)	23, 27, 47, 65, 71, 193, 257, 274, 294
Lsp1109I	GCAGC	5 cut(s)	22, 73, 204, 229, 289
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	134, 165
MboII	GAAGA	3 cut(s)	97, 215, 267
MfeI	CAATTG	1 cut(s)	127
MluCI	AATT	3 cut(s)	52, 127, 154
MnlI	CCTC	2 cut(s)	240, 309
MspA1I	CMGCKG	3 cut(s)	13, 264, 302
MspI	CCGG	1 cut(s)	244
MunI	CAATTG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	223, 270, 308
NlaIII	CATG	3 cut(s)	10, 68, 177
NspI	RCATGY	2 cut(s)	10, 177
PaeI	GCATGC	2 cut(s)	10, 177
PciSI	GCTCTTC	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	6 cut(s)	12, 15, 63, 194, 219, 304
PstI	CTGCAG	1 cut(s)	39
PvuII	CAGCTG	2 cut(s)	13, 302
SapI	GCTCTTC	1 cut(s)	280
SatI	GCNGC	6 cut(s)	11, 14, 62, 193, 218, 303
SbfI	CCTGCAGG	1 cut(s)	39
SdaI	CCTGCAGG	1 cut(s)	39
SetI	ASST	6 cut(s)	15, 36, 93, 141, 222, 304
SfcI	CTRYAG	1 cut(s)	35
SphI	GCATGC	2 cut(s)	10, 177
Sse8387I	CCTGCAGG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	52, 127, 154
SsiI	CCGC	2 cut(s)	145, 264
TaiI	ACGT	1 cut(s)	141
TasI	AATT	3 cut(s)	52, 127, 154
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	6 cut(s)	10, 13, 61, 192, 217, 302
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	2 cut(s)	10, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.