Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

32856376 .. 32858777

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAGCAACCTCAGGAGTCGACGCCGGCAGCGGATGAGATTCGCTCCTTACGGGTCGACGGCTTGATTCCGAGGATGGGTGAGATGTATCTCTACAACTGCTTCAGTGACTGCGCAGAGGTTTTGGCTGCAACAGTTTTGCGGAAAGTGCAAACCGGATGGCAGGAAAATCATGGTTTTGTCGAGTTTGCTTCTCACAGTGTGGCTGAGTTTGTCTTGAGCTCCTACAATGGTGAGCTCATGCCCAACCACAATAATCGGAGATTTTACCTGAGCTGGGACACTGATGGTTACGGTACAAGGTGGCGCTGGGATCCTGTTTACCAGCAATGGTCTTTCTTTGGTTATGCTGAGCACGGTGGTATGTTGGATGCCAAGACAGTGATCGAGTTGTACAAGGACTGCATACCTGTTGTTACTGAAAAGCCATCTGGTAGTGCTCAGCAATATTCGCAAGCTGCCTACCCAAATACTCTTGGAGATTCAGGCGAGGCTATTCCAAATAACATAGAAAACCAGCTAGTACAGACAAAGTGGAATGGTTATGGTCATGCTGGCTCTATGGATAGTTACAAGCGTTTGAAGCGTGCAGATGTGGATCTATGGAATGGTGGTAATGGTGCTGGGTTTATGTTTATGCAGAACAACTTGATGCGTCCACATGACCTTAACCTGTATCATGGAGGACAGGCTGGATATGGAAATTACCAGCAGCCTGGTCTATACCCGCAGCCTTGTGCTTATCAGCTGCCTTATCAGCAACATCAGACACAGTGGACTGTTGGCAGTGATGTGCGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCGGGATATGTAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

284

Amino Acids

32.18

Weight (kDa)

5.43

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	18 - 84	5.2e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	837
AccI	GTMKAC	2 cut(s)	20, 57
AciI	CCGC	4 cut(s)	32, 142, 728, 836
AclWI	GGATC	3 cut(s)	308, 321, 606
AcuI	CTGAAG	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	3 cut(s)	298, 395, 525
AfiI	CCNNNNNNNGG	3 cut(s)	77, 277, 835
AgsI	TTSAA	1 cut(s)	583
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	7 cut(s)	222, 238, 276, 458, 520, 748, 811
AluI	AGCT	7 cut(s)	222, 238, 276, 458, 520, 748, 811
Alw21I	GWGCWC	4 cut(s)	224, 240, 357, 442
AlwI	GGATC	3 cut(s)	308, 321, 606
AlwNI	CAGNNNCTG	1 cut(s)	111
ApeKI	GCWGC	8 cut(s)	4, 29, 128, 458, 712, 730, 748, 808
AspLEI	GCGC	2 cut(s)	116, 309
AsuHPI	GGTGA	3 cut(s)	92, 245, 805
AxyI	CCTNAGG	1 cut(s)	12
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	2 cut(s)	224, 240
Bbv12I	GWGCWC	4 cut(s)	224, 240, 357, 442
BbvI	GCAGC	8 cut(s)	16, 41, 115, 445, 724, 735, 742, 820
BccI	CCATC	4 cut(s)	70, 153, 281, 436
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	717
BfaI	CTAG	2 cut(s)	521, 853
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	837
BisI	GCNGC	8 cut(s)	5, 30, 129, 459, 713, 731, 749, 809
BlpI	GCTNAGC	2 cut(s)	351, 441
BlsI	GCNGC	8 cut(s)	6, 31, 130, 460, 714, 732, 750, 810
Bme1390I	CCNGG	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	2 cut(s)	361, 642
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu1102I	GCTNAGC	2 cut(s)	351, 441
BpuEI	CTTGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 277, 835
Bse118I	RCCGGY	1 cut(s)	25
Bse21I	CCTNAGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	597
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	4 cut(s)	40, 81, 164, 376
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	77, 277, 835
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	5 cut(s)	26, 198, 263, 342, 455
BseXI	GCAGC	8 cut(s)	16, 41, 115, 445, 724, 735, 742, 820
BseYI	CCCAGC	3 cut(s)	276, 309, 623
BsgI	GTGCAG	1 cut(s)	609
BsiHKAI	GWGCWC	4 cut(s)	224, 240, 357, 442
BsiSI	CCGG	2 cut(s)	26, 156
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	3 cut(s)	77, 277, 835
BsmFI	GGGAC	1 cut(s)	293
Bsp1286I	GDGCHC	4 cut(s)	224, 240, 357, 442
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	313, 384, 598
Bsp1720I	GCTNAGC	2 cut(s)	351, 441
BspACI	CCGC	4 cut(s)	32, 142, 728, 836
BspCNI	CTCAG	5 cut(s)	25, 199, 264, 343, 454
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	834
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	3 cut(s)	308, 321, 606
BsrDI	GCAATG	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	3 cut(s)	313, 384, 598
BssNI	GRCGYC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	7 cut(s)	136, 200, 296, 359, 382, 774, 781
BstACI	GRCGYC	1 cut(s)	23
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	27, 456, 556, 588, 834
BstDEI	CTNAG	5 cut(s)	12, 207, 272, 351, 441
BstF5I	GGATG	4 cut(s)	40, 81, 164, 376
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	2 cut(s)	116, 309
BstKTI	GATC	3 cut(s)	316, 387, 601
BstMBI	GATC	3 cut(s)	313, 384, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 451, 583, 757
BstNI	CCWGG	1 cut(s)	717
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	830
BstV1I	GCAGC	8 cut(s)	16, 41, 115, 445, 724, 735, 742, 820
BstX2I	RGATCY	2 cut(s)	313, 598
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	2 cut(s)	313, 598
Bsu36I	CCTNAGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	40, 81, 164, 376
BtsI	GCAGTG	1 cut(s)	793
BtsIMutI	CAGTG	6 cut(s)	112, 205, 282, 387, 779, 793
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	5 cut(s)	27, 456, 556, 588, 834
CaiI	CAGNNNCTG	1 cut(s)	111
CfoI	GCGC	2 cut(s)	116, 309
Cfr10I	RCCGGY	1 cut(s)	25
CseI	GACGC	3 cut(s)	31, 644, 785
Csp6I	GTAC	3 cut(s)	297, 394, 524
CviAII	CATG	5 cut(s)	173, 241, 551, 662, 680
CviQI	GTAC	3 cut(s)	297, 394, 524
DdeI	CTNAG	5 cut(s)	12, 207, 272, 351, 441
DpnI	GATC	3 cut(s)	315, 386, 600
DpnII	GATC	3 cut(s)	313, 384, 598
DraIII	CACNNNGTG	1 cut(s)	202
Ecl136II	GAGCTC	2 cut(s)	222, 238
Eco24I	GRGCYC	2 cut(s)	224, 240
Eco53kI	GAGCTC	2 cut(s)	222, 238
Eco57I	CTGAAG	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	12
EcoICRI	GAGCTC	2 cut(s)	222, 238
EcoRII	CCWGG	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	224, 240
FaeI	CATG	5 cut(s)	176, 244, 554, 665, 683
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	5 cut(s)	172, 240, 550, 661, 679
FauI	CCCGC	2 cut(s)	735, 829
FblI	GTMKAC	2 cut(s)	20, 57
Fnu4HI	GCNGC	8 cut(s)	5, 30, 129, 459, 713, 731, 749, 809
FokI	GGATG	4 cut(s)	47, 88, 171, 383
FriOI	GRGCYC	2 cut(s)	224, 240
Fsp4HI	GCNGC	8 cut(s)	5, 30, 129, 459, 713, 731, 749, 809
FspBI	CTAG	2 cut(s)	521, 853
FspI	TGCGCA	1 cut(s)	115
GlaI	GCGC	2 cut(s)	115, 308
GluI	GCNGC	8 cut(s)	5, 30, 129, 459, 713, 731, 749, 809
GsaI	CCCAGC	3 cut(s)	280, 313, 627
HaeII	RGCGCY	1 cut(s)	310
HapII	CCGG	2 cut(s)	26, 156
HgaI	GACGC	3 cut(s)	31, 644, 785
HhaI	GCGC	2 cut(s)	116, 309
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	176, 244, 554, 665, 683
Hin6I	GCGC	2 cut(s)	114, 307
HinP1I	GCGC	2 cut(s)	114, 307
HincII	GTYRAC	2 cut(s)	21, 58
HindII	GTYRAC	2 cut(s)	21, 58
HinfI	GANTC	4 cut(s)	17, 40, 67, 482
HpaII	CCGG	2 cut(s)	26, 156
HphI	GGTGA	3 cut(s)	92, 245, 805
Hpy166II	GTNNAC	6 cut(s)	21, 58, 322, 659, 777, 800
Hpy188I	TCNGA	3 cut(s)	72, 261, 768
Hpy188III	TCNNGA	2 cut(s)	14, 217
Hpy8I	GTNNAC	6 cut(s)	21, 58, 322, 659, 777, 800
Hpy99I	CGWCG	2 cut(s)	25, 62
HpyCH4III	ACNGT	7 cut(s)	136, 200, 296, 359, 382, 774, 781
HpyCH4V	TGCA	7 cut(s)	4, 131, 151, 405, 590, 640, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 451, 583, 757
HpyF3I	CTNAG	5 cut(s)	12, 207, 272, 351, 441
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	5 cut(s)	176, 244, 554, 665, 683
HspAI	GCGC	2 cut(s)	114, 307
KroI	GCCGGC	1 cut(s)	25
KroNI	GCCGGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	313, 384, 598
LmnI	GCTCC	2 cut(s)	50, 227
Lsp1109I	GCAGC	8 cut(s)	16, 41, 115, 445, 724, 735, 742, 820
LweI	GCATC	2 cut(s)	361, 642
MaeI	CTAG	2 cut(s)	521, 853
MaeIII	GTNAC	4 cut(s)	107, 290, 415, 569
MalI	GATC	3 cut(s)	315, 386, 600
MboI	GATC	3 cut(s)	313, 384, 598
MflI	RGATCY	2 cut(s)	313, 598
MhlI	GDGCHC	4 cut(s)	224, 240, 357, 442
MluCI	AATT	2 cut(s)	703, 847
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	5 cut(s)	21, 66, 112, 484, 677
MroNI	GCCGGC	1 cut(s)	25
MseI	TTAA	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	32, 748
MspI	CCGG	2 cut(s)	26, 156
MspR9I	CCNGG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	4 cut(s)	148, 451, 583, 757
NaeI	GCCGGC	1 cut(s)	27
NdeII	GATC	3 cut(s)	313, 384, 598
NgoMIV	GCCGGC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	176, 244, 554, 665, 683
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	107
NsbI	TGCGCA	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	27
PfeI	GAWTC	3 cut(s)	40, 67, 482
PkrI	GCNGC	8 cut(s)	6, 31, 130, 460, 714, 732, 750, 810
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	2 cut(s)	224, 240
Psp6I	CCWGG	1 cut(s)	715
PspFI	CCCAGC	3 cut(s)	276, 309, 623
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	834
PstNI	CAGNNNCTG	1 cut(s)	111
PsuI	RGATCY	2 cut(s)	313, 598
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	3 cut(s)	298, 395, 525
RsaNI	GTAC	3 cut(s)	297, 394, 524
SacI	GAGCTC	2 cut(s)	224, 240
SalI	GTCGAC	2 cut(s)	19, 56
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	8 cut(s)	5, 30, 129, 459, 713, 731, 749, 809
Sau3AI	GATC	3 cut(s)	313, 384, 598
SbfI	CCTGCAGG	1 cut(s)	834
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	717
SdaI	CCTGCAGG	1 cut(s)	834
SduI	GDGCHC	4 cut(s)	224, 240, 357, 442
SfaNI	GCATC	2 cut(s)	361, 642
SfcI	CTRYAG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse8387I	CCTGCAGG	1 cut(s)	834
Sse9I	AATT	2 cut(s)	703, 847
SsiI	CCGC	4 cut(s)	32, 142, 728, 836
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	521, 853
SstI	GAGCTC	2 cut(s)	224, 240
StyD4I	CCNGG	1 cut(s)	715
TaaI	ACNGT	7 cut(s)	136, 200, 296, 359, 382, 774, 781
TaqI	TCGA	4 cut(s)	20, 57, 183, 387
TasI	AATT	2 cut(s)	703, 847
TatI	WGTACW	2 cut(s)	393, 523
TfiI	GAWTC	3 cut(s)	40, 67, 482
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	6 cut(s)	112, 205, 289, 387, 779, 793
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	8 cut(s)	4, 29, 128, 458, 712, 730, 748, 808
Tsp45I	GTSAC	1 cut(s)	107
TspRI	CASTG	6 cut(s)	112, 205, 289, 387, 779, 793
XmiI	GTMKAC	2 cut(s)	20, 57
XspI	CTAG	2 cut(s)	521, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.