Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020974.1

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 763

Gene Structure 763 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020974.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 763 bp

tctcacaggtaggcccctaggtttttctcttgatcgtcccactttcgaggtatactatagcagttctggtgaatgtgaggctttgccggatcctccattttacctaccggaactagatcagaacgaaaactacagcggccgtttgcctggtagtgaattgtcttatgctattgttggtaccaagatcttgatctcgagcaggcacaacaatgaatcaatccctaactttcccattatgtgttttgatgtgaatgagaaggaaaagaaatggagagagatgacttccttgttcgatggtaagccctttcccttcatcagcagggcggctttggtcttggacttgaacgatggtacacatgataaggtcatgttttccgttcgtgaatatcacaagatgtatgtctcccgattagttgtgaatgatgatggtagtatatacaactctcaggattctcctctgttgttttttagctggttctataccttctttggtgacctttgtcctttacattcaaagtcatacagctttgttgatctaggaaatcaaaaagttggctttgttgtgtgcgggaacatgggtacaatggcaagaggtgatacaccttctctccggatggtgcgtgttcttgtgttagtaattgaatatgaagtgacaaaatcaagatatgtacggggaaagctcctggccactcgcacctttgaatacaaatgccattccgccggtctccgatccgtcgacttgattggtagctttgtgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

253

Amino Acids

28.78

Weight (kDa)

6.25

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccI	GTMKAC	2 cut(s)	52, 736
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	4 cut(s)	136, 324, 568, 718
AclWI	GGATC	3 cut(s)	84, 97, 724
AcoI	YGGCCR	2 cut(s)	137, 685
AfaI	GTAC	4 cut(s)	179, 353, 581, 670
AgsI	TTSAA	4 cut(s)	344, 514, 642, 702
AjnI	CCWGG	2 cut(s)	146, 682
AluBI	AGCT	4 cut(s)	472, 526, 680, 751
AluI	AGCT	4 cut(s)	472, 526, 680, 751
Alw26I	GTCTC	2 cut(s)	407, 729
AlwI	GGATC	3 cut(s)	84, 97, 724
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	610
AoxI	GGCC	3 cut(s)	12, 137, 685
Asp718I	GGTACC	1 cut(s)	177
AspA2I	CCTAGG	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	3 cut(s)	81, 504, 606
AvaI	CYCGRG	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	89
BanI	GGYRCC	1 cut(s)	177
BccI	CCATC	4 cut(s)	288, 342, 420, 608
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	148, 684
BcoDI	GTCTC	2 cut(s)	407, 729
BfaI	CTAG	3 cut(s)	18, 114, 537
BfmI	CTRYAG	2 cut(s)	56, 131
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	2 cut(s)	137, 325
BlnI	CCTAGG	1 cut(s)	17
BlsI	GCNGC	2 cut(s)	138, 326
Bme1390I	CCNGG	2 cut(s)	148, 684
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	15, 91, 179
BmrFI	CCNGG	2 cut(s)	148, 684
BoxI	GACNNNNGTC	1 cut(s)	499
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	2 cut(s)	107, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	592, 622
Bse118I	RCCGGY	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	148, 684
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	619
BseJI	GATNNNNATC	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	459
BseRI	GAGGAG	1 cut(s)	445
BseX3I	CGGCCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	14, 139, 687
BshNI	GGYRCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	140
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	87, 108, 611, 721
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	407, 729
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	14, 139, 687
Bso31I	GGTCTC	1 cut(s)	729
BsoBI	CYCGRG	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
BspACI	CCGC	4 cut(s)	136, 324, 568, 718
BspANI	GGCC	3 cut(s)	14, 139, 687
BspCNI	CTCAG	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	610
BspLI	GGNNCC	3 cut(s)	15, 91, 179
BspPI	GGATC	3 cut(s)	84, 97, 724
BspT107I	GGYRCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	720
BssAI	RCCGGY	1 cut(s)	720
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
BssNAI	GTATAC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	17
Bst1107I	GTATAC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	148, 684
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	445
BstEII	GGTNACC	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	619
BstKTI	GATC	7 cut(s)	35, 92, 119, 187, 193, 536, 732
BstMAI	GTCTC	2 cut(s)	407, 729
BstMBI	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
BstMCI	CGRYCG	1 cut(s)	140
BstNI	CCWGG	2 cut(s)	148, 684
BstPAI	GACNNNNGTC	1 cut(s)	499
BstPI	GGTNACC	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	146, 682
BstSFI	CTRYAG	2 cut(s)	56, 131
BstX2I	RGATCY	2 cut(s)	89, 184
BstYI	RGATCY	2 cut(s)	89, 184
BstZ17I	GTATAC	1 cut(s)	53
BstZI	CGGCCG	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	14, 139, 687
BtsCI	GGATG	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	4 cut(s)	178, 352, 580, 669
CviAII	CATG	3 cut(s)	357, 368, 575
CviQI	GTAC	4 cut(s)	178, 352, 580, 669
DdeI	CTNAG	1 cut(s)	445
DpnI	GATC	7 cut(s)	34, 91, 118, 186, 192, 535, 731
DpnII	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
EaeI	YGGCCR	2 cut(s)	137, 685
EagI	CGGCCG	1 cut(s)	137
EciI	GGCGGA	1 cut(s)	707
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	729
Eco52I	CGGCCG	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	13
EcoO65I	GGTNACC	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	146, 682
EcoT14I	CCWWGG	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	17
FaeI	CATG	3 cut(s)	360, 371, 578
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	356, 367, 574
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	2 cut(s)	52, 736
Fnu4HI	GCNGC	2 cut(s)	137, 325
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	2 cut(s)	137, 325
FspBI	CTAG	3 cut(s)	18, 114, 537
GluI	GCNGC	2 cut(s)	137, 325
HaeIII	GGCC	3 cut(s)	14, 139, 687
HapII	CCGG	4 cut(s)	87, 108, 611, 721
Hin1II	CATG	3 cut(s)	360, 371, 578
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HinfI	GANTC	2 cut(s)	213, 450
HpaII	CCGG	4 cut(s)	87, 108, 611, 721
HphI	GGTGA	3 cut(s)	81, 504, 606
Hpy166II	GTNNAC	3 cut(s)	53, 354, 737
Hpy188I	TCNGA	2 cut(s)	121, 729
Hpy188III	TCNNGA	8 cut(s)	30, 188, 194, 381, 406, 447, 611, 661
Hpy8I	GTNNAC	3 cut(s)	53, 354, 737
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	4 cut(s)	251, 320, 494, 613
HpyF3I	CTNAG	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	360, 371, 578
Kpn2I	TCCGGA	1 cut(s)	610
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
LmnI	GCTCC	1 cut(s)	685
MaeI	CTAG	3 cut(s)	18, 114, 537
MaeIII	GTNAC	2 cut(s)	492, 650
MalI	GATC	7 cut(s)	34, 91, 118, 186, 192, 535, 731
MboI	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
MflI	RGATCY	2 cut(s)	89, 184
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	2 cut(s)	156, 637
MluNI	TGGCCA	1 cut(s)	687
MnlI	CCTC	5 cut(s)	41, 71, 103, 466, 585
Mox20I	TGGCCA	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	208
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	4 cut(s)	87, 108, 611, 721
MspR9I	CCNGG	2 cut(s)	148, 684
MvaI	CCWGG	2 cut(s)	148, 684
NdeII	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
NlaIII	CATG	3 cut(s)	360, 371, 578
NlaIV	GGNNCC	3 cut(s)	15, 91, 179
NmuCI	GTSAC	2 cut(s)	492, 650
PaeR7I	CTCGAG	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	213, 450
PkrI	GCNGC	2 cut(s)	138, 326
PshAI	GACNNNNGTC	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	146, 682
PspEI	GGTNACC	1 cut(s)	492
PspGI	CCWGG	2 cut(s)	146, 682
PspN4I	GGNNCC	3 cut(s)	15, 91, 179
PspPI	GGNCC	1 cut(s)	13
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
PsuI	RGATCY	2 cut(s)	89, 184
RsaI	GTAC	4 cut(s)	179, 353, 581, 670
RsaNI	GTAC	4 cut(s)	178, 352, 580, 669
RseI	CAYNNNNRTG	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	735
SatI	GCNGC	2 cut(s)	137, 325
Sau3AI	GATC	7 cut(s)	32, 89, 116, 184, 190, 533, 729
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	148, 684
SfcI	CTRYAG	2 cut(s)	56, 131
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	156, 637
SsiI	CCGC	4 cut(s)	136, 324, 568, 718
SspMI	CTAG	3 cut(s)	18, 114, 537
StyD4I	CCNGG	2 cut(s)	146, 682
StyI	CCWWGG	1 cut(s)	17
TaqI	TCGA	4 cut(s)	46, 195, 292, 736
TasI	AATT	2 cut(s)	156, 637
TauI	GCSGC	2 cut(s)	139, 327
TfiI	GAWTC	2 cut(s)	213, 450
TseFI	GTSAC	2 cut(s)	492, 650
Tsp45I	GTSAC	2 cut(s)	492, 650
TspDTI	ATGAA	3 cut(s)	226, 302, 661
TspGWI	ACGGA	2 cut(s)	365, 722
XhoI	CTCGAG	1 cut(s)	194
XmaJI	CCTAGG	1 cut(s)	17
XmiI	GTMKAC	2 cut(s)	52, 736
XspI	CTAG	3 cut(s)	18, 114, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.