Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

1775413 .. 1777119

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026269

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCTGACCATGTCCCCAAATGGATGCAGCTGAGAGAGTTCAGACGGACACAGTGGAGCTCATTAAGGAGGGAAATTCAAGAGCATGCAACAGAATGGTATCCATTCCGCAATGGATTGCCAGCAAATAGGGTCCAAACAATTCTCAGGGACTTGATTGAAAATTCCATCAATATGCAGAAGCAACAACATCAATTCGGAGTGCTAAACTTGGACAGTATAATCATAAATGCAGACTCTGAAGCATATTTAAAATACATACAGTTGGACCAATCCTCCGCTGAGGCTAAACAGACGTATAATGAAGCCCTTGACAGACTGATTGAGACCATATTTCCAACAGACCTATCATACCCGCTTGAGTTCGAGCACTCTAGGCATCTGGCCAGTAGGGCAAGCAATCAGACTGAGCTCAAGCAGTTGTTCTACCACCCAGTACTGCTGTCCAGAGTAGAAAGAATACTTTTTGTCCATCATGCCTTCGTCATGATTGGACAAAAATATATGACAGAGGACAAAACAATATGGAAGAGACTAGAAGAAGAGCAGAAGTTCATGAACATCGATAACACAATCAGTGGCAAACCGATATTAAAGGAAGTGTACAAGAAACGGATGCAAGGGCAGCTTTCAAATTCTACCGGCACTGCATCCTTCACTACAACGACTATTTGGAAGAGGTCAGTTCACCCTAAATATCAACTCAAACTGAAAACAGATGAAAGACACATAAACCCTAAAGATACAACATGTGATACCAAGCAGCACCAAAATATTTACAAAGTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

31.29

Weight (kDa)

9.21

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	109, 279, 356
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	3 cut(s)	75, 163, 634
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	3 cut(s)	438, 605, 788
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	80, 161, 633
AluBI	AGCT	4 cut(s)	31, 60, 412, 628
AluI	AGCT	4 cut(s)	31, 60, 412, 628
Alw21I	GWGCWC	3 cut(s)	62, 372, 414
Alw26I	GTCTC	2 cut(s)	320, 526
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	3 cut(s)	28, 625, 763
ApoI	RAATTY	3 cut(s)	75, 163, 634
AspS9I	GGNCC	2 cut(s)	133, 268
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	133, 268
BalI	TGGCCA	1 cut(s)	386
BanII	GRGCYC	2 cut(s)	62, 414
Bbv12I	GWGCWC	3 cut(s)	62, 372, 414
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	40, 637, 775
BccI	CCATC	2 cut(s)	176, 480
BciVI	GTATCC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	320, 526
BfaI	CTAG	2 cut(s)	375, 536
BfuI	GTATCC	1 cut(s)	111
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	29, 626, 764
BlsI	GCNGC	3 cut(s)	30, 627, 765
BmcAI	AGTACT	1 cut(s)	438
Bme18I	GGWCC	2 cut(s)	133, 268
BmgT120I	GGNCC	2 cut(s)	133, 268
BmiI	GGNNCC	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	4 cut(s)	15, 388, 606, 659
BmuI	ACTGGG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	380, 398
Bsa29I	ATCGAT	1 cut(s)	564
BsaI	GGTCTC	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	387, 434
Bse3DI	GCAATG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	564
BseGI	GGATG	3 cut(s)	30, 621, 650
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	4 cut(s)	23, 160, 273, 399
BseNI	ACTGG	2 cut(s)	387, 434
BseXI	GCAGC	3 cut(s)	40, 637, 775
BshFI	GGCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	564
BsiHKAI	GWGCWC	3 cut(s)	62, 372, 414
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	320, 526
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	3 cut(s)	62, 372, 414
Bsp1407I	TGTACA	1 cut(s)	603
BspACI	CCGC	3 cut(s)	109, 279, 356
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	4 cut(s)	24, 159, 274, 400
BspDI	ATCGAT	1 cut(s)	564
BspHI	TCATGA	2 cut(s)	486, 555
BspLI	GGNNCC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	641
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	387, 434
BssAI	RCCGGY	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	54, 218, 264
Bst6I	CTCTTC	3 cut(s)	524, 537, 671
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	87, 123, 397
BstDEI	CTNAG	4 cut(s)	32, 146, 282, 408
BstF5I	GGATG	3 cut(s)	30, 621, 650
BstMAI	GTCTC	2 cut(s)	320, 526
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 392, 625
BstNSI	RCATGY	2 cut(s)	89, 753
BstV1I	GCAGC	3 cut(s)	40, 637, 775
Bsu15I	ATCGAT	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	30, 621, 650
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	59, 583, 645
Cac8I	GCNNGC	3 cut(s)	87, 123, 397
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	2 cut(s)	486, 555
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	133, 268
ClaI	ATCGAT	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	437, 604, 787
CviAII	CATG	6 cut(s)	11, 86, 476, 487, 556, 750
CviJI	RGCY	7 cut(s)	31, 60, 287, 308, 386, 412, 628
CviKI_1	RGCY	7 cut(s)	31, 60, 287, 308, 386, 412, 628
CviQI	GTAC	3 cut(s)	437, 604, 787
DdeI	CTNAG	4 cut(s)	32, 146, 282, 408
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	3 cut(s)	524, 537, 671
EarI	CTCTTC	3 cut(s)	524, 537, 671
Ecl136II	GAGCTC	2 cut(s)	60, 412
Eco24I	GRGCYC	2 cut(s)	62, 414
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	133, 268
Eco53kI	GAGCTC	2 cut(s)	60, 412
Eco57I	CTGAAG	1 cut(s)	261
EcoICRI	GAGCTC	2 cut(s)	60, 412
EcoT38I	GRGCYC	2 cut(s)	62, 414
FaeI	CATG	6 cut(s)	14, 89, 479, 490, 559, 753
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	6 cut(s)	10, 85, 475, 486, 555, 749
FauI	CCCGC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	29, 626, 764
FokI	GGATG	3 cut(s)	37, 628, 637
FriOI	GRGCYC	2 cut(s)	62, 414
Fsp4HI	GCNGC	3 cut(s)	29, 626, 764
FspBI	CTAG	2 cut(s)	375, 536
GluI	GCNGC	3 cut(s)	29, 626, 764
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	642
Hin1II	CATG	6 cut(s)	14, 89, 479, 490, 559, 753
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	3 cut(s)	604, 688, 787
Hpy188I	TCNGA	5 cut(s)	7, 44, 200, 241, 405
Hpy188III	TCNNGA	4 cut(s)	80, 447, 487, 556
Hpy8I	GTNNAC	3 cut(s)	604, 688, 787
HpyAV	CCTTC	2 cut(s)	490, 664
HpyCH4III	ACNGT	3 cut(s)	54, 218, 264
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	6 cut(s)	28, 89, 178, 233, 619, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 392, 625
HpyF3I	CTNAG	4 cut(s)	32, 146, 282, 408
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	6 cut(s)	14, 89, 479, 490, 559, 753
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	1 cut(s)	57
LpnPI	CCDG	7 cut(s)	133, 135, 368, 400, 447, 460, 655
Lsp1109I	GCAGC	3 cut(s)	40, 637, 775
LweI	GCATC	4 cut(s)	15, 388, 606, 659
MaeI	CTAG	2 cut(s)	375, 536
MaeII	ACGT	1 cut(s)	296
MboII	GAAGA	4 cut(s)	541, 551, 554, 688
MhlI	GDGCHC	3 cut(s)	62, 372, 414
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	5 cut(s)	75, 141, 163, 194, 634
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	2 cut(s)	246, 362
MnlI	CCTC	5 cut(s)	63, 277, 286, 505, 672
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	3 cut(s)	65, 251, 593
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	31, 281
MspI	CCGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	3 cut(s)	376, 392, 625
NlaIII	CATG	6 cut(s)	14, 89, 479, 490, 559, 753
NlaIV	GGNNCC	1 cut(s)	134
NspI	RCATGY	2 cut(s)	89, 753
PaeI	GCATGC	1 cut(s)	89
PagI	TCATGA	2 cut(s)	486, 555
PciI	ACATGT	1 cut(s)	749
PciSI	GCTCTTC	1 cut(s)	537
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	30, 627, 765
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PscI	ACATGT	1 cut(s)	749
Psp124BI	GAGCTC	2 cut(s)	62, 414
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	133, 268
PstNI	CAGNNNCTG	1 cut(s)	239
PsyI	GACNNNGTC	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	3 cut(s)	438, 605, 788
RsaNI	GTAC	3 cut(s)	437, 604, 787
RseI	CAYNNNNRTG	1 cut(s)	173
SacI	GAGCTC	2 cut(s)	62, 414
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	65, 251, 593
SatI	GCNGC	3 cut(s)	29, 626, 764
Sau96I	GGNCC	2 cut(s)	133, 268
ScaI	AGTACT	1 cut(s)	438
SchI	GAGTC	1 cut(s)	230
SduI	GDGCHC	3 cut(s)	62, 372, 414
SetI	ASST	7 cut(s)	33, 62, 299, 348, 414, 630, 683
SfaNI	GCATC	4 cut(s)	15, 388, 606, 659
SinI	GGWCC	2 cut(s)	133, 268
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	359, 413
SmoI	CTYRAG	2 cut(s)	359, 413
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	5 cut(s)	75, 141, 163, 194, 634
SsiI	CCGC	3 cut(s)	109, 279, 356
SspI	AATATT	1 cut(s)	775
SspMI	CTAG	2 cut(s)	375, 536
SstI	GAGCTC	2 cut(s)	62, 414
TaaI	ACNGT	3 cut(s)	54, 218, 264
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	2 cut(s)	366, 564
TasI	AATT	5 cut(s)	75, 141, 163, 194, 634
TatI	WGTACW	3 cut(s)	436, 603, 786
Tru1I	TTAA	3 cut(s)	65, 251, 593
Tru9I	TTAA	3 cut(s)	65, 251, 593
TscAI	CASTG	3 cut(s)	59, 583, 652
TseI	GCWGC	3 cut(s)	28, 625, 763
TspDTI	ATGAA	4 cut(s)	318, 544, 572, 735
TspGWI	ACGGA	2 cut(s)	61, 628
TspRI	CASTG	3 cut(s)	59, 583, 652
Tth111I	GACNNNGTC	1 cut(s)	11
VpaK11BI	GGWCC	2 cut(s)	133, 268
XapI	RAATTY	3 cut(s)	75, 163, 634
XceI	RCATGY	2 cut(s)	89, 753
XspI	CTAG	2 cut(s)	375, 536
ZrmI	AGTACT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.