Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

32902322 .. 32903683

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGATAGTTACAAGCGTTTGAAGCATGCACATGTGGATCTATGGAATGGTGGTAATGGTGTTGGGTTTATGTTTATGCAGAACAACTTGATGCGTCCACATCACCTTAACCTGTATCATGGAGGACAGGCTGGATATGTAAATTACCAGCAGCATGGTCTATACCCGCAGCCTTGTGCTTATCAGCTGCCTTATCAGCAACATCAGACACAGTGGACTGTTGGCAGTGATATGCGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTATACCCGCAGCCTTGTGCTTATCAGCTGCCTTATCAGCAACATCAGACACAGTGGACTGTTGGCAGTGATGTGCGTCCACTTGGGCAGCTCACCCAAGTTCCTAACCTGCAGGCTGGATATGTAAATTACCAGCAGCATGGTCTCTACCCACAGGAGAAGAAGCTGTATTTATGTTTCGATGAGTGCAATGACCTGACCAATTGTTGTTATGTTCTCCGCACCATAAATTTGTCCGAGTTACTTGCATGCTCCTGTGAGTTTAGCAGCGATACTGAAGAAATAACCAAGTGCAGCTATTGCACCTCCAAAGTCAAACCGGAATCTCGGTTGCGCCAGCGGGCTTGGCTCTTCGCCAGCGAGGAAAATCCTTTCAGCTACGGTAGGGTGGAGGTGATAATTCCTTCGTGTATGGGTTGCTGTGCATCCGGCTCCCAAATCTTCTTCGCTGGTGGCTTAGCTCCACTACCACTTAGGGAAAGACAATTTCTGCCAAGTGGAGATGTCTATAGTTTTGAACCCAAGTCTATGTTTTGGAAAAAGCATGATTGGAGTTTCCTGAAGGGGAAACCAGACCCCTTGCTTTTTGAGATGAACGGAAATCTCTATTGTCTCGCAGGTAGTCCCCTAGGTTTTTCTCTTGATCGTCCCACTTTCGAGGTATACTATAGCAGTTCTGGTGAATGTGAGGCTTTGCCGTATCCTCCATTTTACCTACTGGAACTAGATCGCACCAAAAACTACAGCGGCCCTTTGGCTGGTCGTGAATTGTGTTATGCTATTGTTGGTACCAAGATCTTGATCTCGAGCAGGCACAACAATGAATCAATCCCTAACTTTCCCATTATGTGTTTTGATGTGAATGAGAAGGAAAAGAAATGGAGAGAGATGACTTCCTTGTTCGATGGTAAGCCGTTTCCCTTCATCAGCAGGGCGGCTTTGGTCTTGGACTTGAACGATGGTACACATGATAAGGTCATGTTTTCCATTCGTGAATATCACGAGATATATGTCTCCCGATTAGTTGTGAATGATGATGGTAGTATATACAACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

453

Amino Acids

51.89

Weight (kDa)

6.27

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	276, 420, 911
Acc65I	GGTACC	1 cut(s)	1091
AccB1I	GGYRCC	1 cut(s)	1091
AccI	GTMKAC	1 cut(s)	966
AciI	CCGC	6 cut(s)	167, 311, 523, 643, 1050, 1238
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	2 cut(s)	600, 884
AfaI	GTAC	2 cut(s)	1093, 1267
AfiI	CCNNNNNNNGG	1 cut(s)	1061
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	22, 821, 1258
AluBI	AGCT	8 cut(s)	187, 250, 331, 394, 469, 600, 681, 764
AluI	AGCT	8 cut(s)	187, 250, 331, 394, 469, 600, 681, 764
Alw26I	GTCTC	3 cut(s)	452, 920, 1321
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	1108
AoxI	GGCC	1 cut(s)	1051
ApoI	RAATTY	1 cut(s)	532
Asp718I	GGTACC	1 cut(s)	1091
AspA2I	CCTAGG	1 cut(s)	931
AspLEI	GCGC	1 cut(s)	639
AspS9I	GGNCC	1 cut(s)	1052
AsuHPI	GGTGA	5 cut(s)	95, 244, 388, 709, 995
AvaI	CYCGRG	1 cut(s)	1108
AvrII	CCTAGG	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	1091
BauI	CACGAG	1 cut(s)	1304
BccI	CCATC	3 cut(s)	1202, 1256, 1334
BceAI	ACGGC	2 cut(s)	985, 1201
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciVI	GTATCC	1 cut(s)	1014
BcoDI	GTCTC	3 cut(s)	452, 920, 1321
BfaI	CTAG	2 cut(s)	932, 1028
BfmI	CTRYAG	5 cut(s)	269, 413, 811, 970, 1045
BfuAI	ACCTGC	3 cut(s)	276, 420, 911
BfuI	GTATCC	1 cut(s)	1014
BglII	AGATCT	1 cut(s)	1098
BlnI	CCTAGG	1 cut(s)	931
BlpI	GCTNAGC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	1108
BmgT120I	GGNCC	1 cut(s)	1052
BmiI	GGNNCC	2 cut(s)	736, 1093
BmsI	GCATC	2 cut(s)	81, 737
Bpu1102I	GCTNAGC	1 cut(s)	760
BsaBI	GATNNNNATC	1 cut(s)	1103
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	931
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	1 cut(s)	1061
Bse1I	ACTGG	1 cut(s)	1026
Bse3DI	GCAATG	1 cut(s)	499
Bse8I	GATNNNNATC	1 cut(s)	1103
BseDI	CCNNGG	1 cut(s)	931
BseGI	GGATG	1 cut(s)	728
BseJI	GATNNNNATC	1 cut(s)	1103
BseLI	CCNNNNNNNGG	1 cut(s)	1061
BseMI	GCAATG	1 cut(s)	499
BseNI	ACTGG	1 cut(s)	1026
BsgI	GTGCAG	1 cut(s)	616
BshFI	GGCC	1 cut(s)	1053
BshNI	GGYRCC	1 cut(s)	1091
BsiHKCI	CYCGRG	1 cut(s)	1108
BsiSI	CCGG	2 cut(s)	623, 732
BslFI	GGGAC	2 cut(s)	912, 936
BslI	CCNNNNNNNGG	1 cut(s)	1061
BsmAI	GTCTC	3 cut(s)	452, 920, 1321
BsmFI	GGGAC	2 cut(s)	912, 936
BsnI	GGCC	1 cut(s)	1053
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	1108
Bsp143I	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
Bsp1720I	GCTNAGC	1 cut(s)	760
BspACI	CCGC	6 cut(s)	167, 311, 523, 643, 1050, 1238
BspANI	GGCC	1 cut(s)	1053
BspLI	GGNNCC	2 cut(s)	736, 1093
BspMAI	CTGCAG	2 cut(s)	273, 417
BspMI	ACCTGC	3 cut(s)	276, 420, 911
BspPI	GGATC	1 cut(s)	45
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	1091
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	1026
BssECI	CCNNGG	1 cut(s)	931
BssMI	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
BssNAI	GTATAC	1 cut(s)	967
BssSI	CACGAG	1 cut(s)	1304
BssT1I	CCWWGG	1 cut(s)	931
Bst1107I	GTATAC	1 cut(s)	967
Bst2BI	CACGAG	1 cut(s)	1304
Bst4CI	ACNGT	5 cut(s)	213, 220, 357, 364, 686
Bst6I	CTCTTC	1 cut(s)	659
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstC8I	GCNNGC	8 cut(s)	27, 273, 417, 553, 641, 645, 661, 1115
BstDEI	CTNAG	3 cut(s)	760, 776, 1359
BstF5I	GGATG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	639
BstKTI	GATC	5 cut(s)	40, 949, 1033, 1101, 1107
BstMAI	GTCTC	3 cut(s)	452, 920, 1321
BstMBI	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 196, 340, 603, 649
BstNSI	RCATGY	3 cut(s)	29, 35, 555
BstSFI	CTRYAG	5 cut(s)	269, 413, 811, 970, 1045
BstX2I	RGATCY	2 cut(s)	37, 1098
BstXI	CCANNNNNNTGG	3 cut(s)	155, 299, 443
BstYI	RGATCY	2 cut(s)	37, 1098
BstZ17I	GTATAC	1 cut(s)	967
BsuI	GTATCC	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	1053
BtsCI	GGATG	1 cut(s)	728
BtsI	GCAGTG	2 cut(s)	232, 376
BtsIMutI	CAGTG	4 cut(s)	218, 232, 362, 376
BveI	ACCTGC	3 cut(s)	276, 420, 911
Cac8I	GCNNGC	8 cut(s)	27, 273, 417, 553, 641, 645, 661, 1115
CfoI	GCGC	1 cut(s)	639
Cfr13I	GGNCC	1 cut(s)	1052
CseI	GACGC	3 cut(s)	83, 224, 368
Csp6I	GTAC	2 cut(s)	1092, 1266
CviQI	GTAC	2 cut(s)	1092, 1266
DdeI	CTNAG	3 cut(s)	760, 776, 1359
DpnI	GATC	5 cut(s)	39, 948, 1032, 1100, 1106
DpnII	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco130I	CCWWGG	1 cut(s)	931
Eco31I	GGTCTC	1 cut(s)	452
Eco57I	CTGAAG	2 cut(s)	600, 884
Eco88I	CYCGRG	1 cut(s)	1108
EcoT14I	CCWWGG	1 cut(s)	931
ErhI	CCWWGG	1 cut(s)	931
FaqI	GGGAC	2 cut(s)	912, 936
FauI	CCCGC	3 cut(s)	174, 318, 636
FblI	GTMKAC	1 cut(s)	966
FokI	GGATG	1 cut(s)	715
FspBI	CTAG	2 cut(s)	932, 1028
GlaI	GCGC	1 cut(s)	638
HaeIII	GGCC	1 cut(s)	1053
HapII	CCGG	2 cut(s)	623, 732
HgaI	GACGC	3 cut(s)	83, 224, 368
HhaI	GCGC	1 cut(s)	639
Hin6I	GCGC	1 cut(s)	637
HinP1I	GCGC	1 cut(s)	637
HinfI	GANTC	2 cut(s)	626, 1127
HpaII	CCGG	2 cut(s)	623, 732
HphI	GGTGA	5 cut(s)	95, 244, 388, 709, 995
Hpy166II	GTNNAC	7 cut(s)	98, 216, 239, 360, 383, 967, 1268
Hpy188I	TCNGA	3 cut(s)	207, 351, 541
Hpy188III	TCNNGA	8 cut(s)	862, 944, 1067, 1102, 1108, 1295, 1304, 1320
Hpy8I	GTNNAC	7 cut(s)	98, 216, 239, 360, 383, 967, 1268
HpyAV	CCTTC	4 cut(s)	717, 859, 1165, 1234
HpyCH4III	ACNGT	5 cut(s)	213, 220, 357, 364, 686
HpyCH4V	TGCA	9 cut(s)	29, 79, 271, 415, 492, 551, 597, 606, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 196, 340, 603, 649
HpyF3I	CTNAG	3 cut(s)	760, 776, 1359
HspAI	GCGC	1 cut(s)	637
KpnI	GGTACC	1 cut(s)	1095
Kzo9I	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	3 cut(s)	560, 740, 769
LweI	GCATC	2 cut(s)	81, 737
MaeI	CTAG	2 cut(s)	932, 1028
MaeIII	GTNAC	2 cut(s)	8, 543
MalI	GATC	5 cut(s)	39, 948, 1032, 1100, 1106
MboI	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
MboII	GAAGA	5 cut(s)	475, 593, 646, 736, 739
MfeI	CAATTG	1 cut(s)	505
MflI	RGATCY	2 cut(s)	37, 1098
MluCI	AATT	8 cut(s)	142, 286, 430, 505, 532, 702, 788, 1070
MnlI	CCTC	7 cut(s)	116, 619, 658, 688, 955, 985, 1017
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	2 cut(s)	30, 1122
MspA1I	CMGCKG	4 cut(s)	187, 331, 643, 1050
MspI	CCGG	2 cut(s)	623, 732
MunI	CAATTG	1 cut(s)	505
MwoI	GCNNNNNNNGC	5 cut(s)	22, 196, 340, 603, 649
NdeII	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
NlaIV	GGNNCC	2 cut(s)	736, 1093
NspI	RCATGY	3 cut(s)	29, 35, 555
PaeI	GCATGC	2 cut(s)	29, 555
PaeR7I	CTCGAG	1 cut(s)	1108
PciI	ACATGT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	626, 1127
PscI	ACATGT	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	736, 1093
PspPI	GGNCC	1 cut(s)	1052
PstI	CTGCAG	2 cut(s)	273, 417
PsuI	RGATCY	2 cut(s)	37, 1098
PvuII	CAGCTG	2 cut(s)	187, 331
RsaI	GTAC	2 cut(s)	1093, 1267
RsaNI	GTAC	2 cut(s)	1092, 1266
RseI	CAYNNNNRTG	2 cut(s)	30, 1122
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	5 cut(s)	37, 946, 1030, 1098, 1104
Sau96I	GGNCC	1 cut(s)	1052
SbfI	CCTGCAGG	2 cut(s)	273, 417
SdaI	CCTGCAGG	2 cut(s)	273, 417
SfaNI	GCATC	2 cut(s)	81, 737
SfcI	CTRYAG	5 cut(s)	269, 413, 811, 970, 1045
Sfr274I	CTCGAG	1 cut(s)	1108
SlaI	CTCGAG	1 cut(s)	1108
SmiMI	CAYNNNNRTG	2 cut(s)	30, 1122
SmlI	CTYRAG	1 cut(s)	1108
SmoI	CTYRAG	1 cut(s)	1108
SphI	GCATGC	2 cut(s)	29, 555
Sse8387I	CCTGCAGG	2 cut(s)	273, 417
Sse9I	AATT	8 cut(s)	142, 286, 430, 505, 532, 702, 788, 1070
SsiI	CCGC	6 cut(s)	167, 311, 523, 643, 1050, 1238
SspMI	CTAG	2 cut(s)	932, 1028
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	5 cut(s)	213, 220, 357, 364, 686
TaqI	TCGA	4 cut(s)	483, 960, 1109, 1206
TasI	AATT	8 cut(s)	142, 286, 430, 505, 532, 702, 788, 1070
TauI	GCSGC	2 cut(s)	1053, 1241
TfiI	GAWTC	2 cut(s)	626, 1127
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	4 cut(s)	218, 232, 362, 376
TspDTI	ATGAA	3 cut(s)	911, 1140, 1216
TspGWI	ACGGA	1 cut(s)	915
TspRI	CASTG	4 cut(s)	218, 232, 362, 376
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	3 cut(s)	29, 35, 555
XhoI	CTCGAG	1 cut(s)	1108
XmaJI	CCTAGG	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	2 cut(s)	932, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.