Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000753

Physical Location & Seq

Genomic Coordinates Reverse (-)

52713850 .. 52715706

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG404200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGTATCGCCTTGATTCTTCTGATTCTAAGGAGACCCATTCGCGTATCGTCAAGTCGACTTCCAACACCCATGAGATCCGATCCCTACGCGTCGAGGGCTTGCTGCCAGAGATGGATGCGAAATATCTCTATGGCTGCTTCAGTGATCATGGCCAGGTTGTAGCTGCCACTGTTATTCATGGTAATGTGAGAACTGGTTTTGTTGAGTTTACTTCTCGGAGCTGGGCTGAGATGATCTTGAAGTCCTACAATGGTCTCGGGATGCCAAACTACCCTCAGATATACCGCCTGAAATGGGATATGGATGCTACCGGTATGATGTGGCGCTTGGATTATGCTTACGAGCGTTGTTCGTACTTTGGTTTTAATGATGCAGGTGAAGAATTGAACGCCAACAAAGCGCTCTTGAGATACAAGCACTTGATACCTGCTGTAAATGAAAAGCCAGCTGCTGCTGCTGGTCAGCAACATCAGGAAGGCGTGTCTGGTTTAACATATGAGATAGTTGAAGGGATTCGCTACAACAACTGGTACGACGACAGGTTTCTGTATCTATGTATGGAGGAATTGTGTAAGGAAAAAGACGGTTGTTACGTTATCCGCACCCTCAAGTTGTCGAACTTATTGTCATGCTCTTGCAAGTTTGACGAAAAGATTGGGAGTATAATCACCTGCCGCTATTGCGCCGACTGCAACGTGCCATTTGAATTGCAAAAGCAGGCTTGGCTATGCACCAAGGACTTCGGCAACCAGAATAGTCCGAGGCTTATGGGATGCACTTCTTATTACGACGTAATTATGTTCGCTGGCGGCCTGGACCAGTCACCAGATCAAACTCGAGCTCCTTACTTTGTGCCGAGTCAAAAATGTTATTATTTTCAGCCGAGAGATATTTTGAACGATAATCCCGAGTGGACAAGGCTTCCTTACTATCTCAAAAGCGGGAAACAGGGGGCCCTGCTGGTTAACGTTGATGGAAGTCTCTGTTGTCTCTCTGGTTTACTCGTTGGTCAGCAAGTCGCTCATCCTACTTTTGAGGTGTTCGATCCCAATTTCGAAAGATGGGTGCCTCTGCCGGATCCTCCTTTTTACACACCCGAAGCACTGAACTACAAACACGGTGACCCTAGGCCTGGTACACACTTGTCTTATGCAATCATGGGCACCAAGCTTTTGGTCTCGAGCAAGATCCCTGGTTCAGATTCCCCTCAATTTCCCGTTTGTTGCTTTGACGTTGAGGAAAAAAAGTGGACAGAGGTCACTACCTTGTTCAATGGTAAGCCTTTTCCCTTCCGACGCAGGGCTTTAGTGGTCGACTTGGAGGATGGTACCCATGATAGGGTCATGTTTTACTTCAATAATTATTTTGCTATAAGAGTCTGCCGATTAGTAGTTAATGAGGATGATGGTAGTATTAAGAACTCACCGCACCAATCTTTGGGGATTGATACCCTCATGACTAGCTTATTGGAAATTACCATTCAAAATCAGTCAATGGTGAAAATGTCGTGGGATTTTGTTGATCTAGGAAATAAAAAAGTCTGCTTTGTTTTGTCCTCGAGCCTCCCGAAAGGCAGAGACGACGACGAGTGTTTCTGTCATCGCCAGACCTTGCGTCTTCTTATCTTGGTAATTCAATTTCAAGTTTTGGAATCAGGAGATTTCTCCTTCAAGTTCCTGGCTACTCGCACCTTTGAATACCAGGGCCATTTCCCTCGCATCTGGCACCCCAATCTGCAGGGTTGCTTTCTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko03015 ko03040 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map03015 map03040 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

RRM_1

Protein Analysis

585

Amino Acids

67.11

Weight (kDa)

6.09

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	29 - 88	7.4e-06	RNA recognition motif
DUF1668	PF07893	354 - 438	6.8e-07	Protein of unknown function (DUF1668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000753)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26720 FvH4_7g27001 FvH4_7g27001 FvH4_7g27001 FvH4_7g31210 FvH4_7g31211 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31260 FvH4_7g31310 FvH4_7g31320 FvH4_7g31670 FvH4_7g31670 FvH4_7g31681 FvH4_7g31682
rosa_chinensis	RchiOBHm_Chr1g0337091 RchiOBHm_Chr1g0337131 RchiOBHm_Chr1g0380941
rosa_laevigata	RLG00000026258 RLG00000026260 RLG00000026268 RLG00000026269 RLG00000029305
rosa_multiflora	Rmu_co8190652.1_g000001 Rmu_co8273449.1_g000001 Rmu_co8310417.1_g000001 Rmu_sc0002160.1_g000028 Rmu_sc0002160.1_g000031 Rmu_sc0002962.1_g000022 Rmu_sc0004623.1_g000006 Rmu_sc0004623.1_g000007 Rmu_sc0013826.1_g000002 Rmu_sc0013826.1_g000003 Rmu_sc0020974.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105360 Rroxscaffold_4G00314970 Rroxscaffold_6G00413200
rosa_rugosa	Rorug01G0131100 Rorug01G0423200 Rorug01G0424100
rosa_samantha	Rh1AG151800 Rh1AG152100 Rh1AG447500 Rh1AG447600 Rh1AG448600 Rh1AG449500 Rh1AG449700 Rh1BG119600 Rh1BG404200 Rh1BG405400 Rh1CG143000 Rh1CG418300 Rh1DG159000 Rh1DG159300 Rh1DG159400 Rh1DG434600 Rh1DG435500 Rh1DG435900
rosa_wichuraiana	Rw0G005920 Rw0G005960 Rw0G005970 Rw1G012410 Rw1G012420 Rw1G038950 Rw1G039110 Rw1G039170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	365, 680
Acc36I	ACCTGC	3 cut(s)	365, 436, 680
Acc65I	GGTACC	1 cut(s)	1328
AccB1I	GGYRCC	4 cut(s)	1066, 1163, 1328, 1725
AccB7I	CCANNNNNTGG	1 cut(s)	1438
AccI	GTMKAC	2 cut(s)	56, 1314
AccII	CGCG	2 cut(s)	43, 90
AciI	CCGC	6 cut(s)	286, 601, 676, 810, 942, 1427
AclI	AACGTT	1 cut(s)	969
AclWI	GGATC	6 cut(s)	70, 75, 1040, 1073, 1086, 1183
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	124
AfaI	GTAC	4 cut(s)	356, 533, 1138, 1330
AfeI	AGCGCT	1 cut(s)	402
AfiI	CCNNNNNNNGG	6 cut(s)	295, 1133, 1300, 1338, 1339, 1438
AflIII	ACRYGT	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	311
AhdI	GACNNNNNGTC	1 cut(s)	1614
AjnI	CCWGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
AluBI	AGCT	6 cut(s)	164, 222, 449, 842, 1171, 1464
AluI	AGCT	6 cut(s)	164, 222, 449, 842, 1171, 1464
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	6 cut(s)	26, 260, 986, 995, 1183, 1572
AlwI	GGATC	6 cut(s)	70, 75, 1040, 1073, 1086, 1183
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
Aor51HI	AGCGCT	1 cut(s)	402
AoxI	GGCC	5 cut(s)	151, 811, 954, 1130, 1705
ApaI	GGGCCC	1 cut(s)	958
ApeKI	GCWGC	6 cut(s)	103, 135, 164, 449, 452, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
AsiGI	ACCGGT	1 cut(s)	311
Asp700I	GAANNNNTTC	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	1328
AspA2I	CCTAGG	1 cut(s)	1127
AspLEI	GCGC	3 cut(s)	327, 403, 686
AspS9I	GGNCC	4 cut(s)	817, 954, 955, 1705
AsuHPI	GGTGA	6 cut(s)	389, 661, 816, 1133, 1416, 1510
AsuII	TTCGAA	1 cut(s)	1056
AvaI	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
AvaII	GGWCC	1 cut(s)	817
AvrII	CCTAGG	1 cut(s)	1127
BaeGI	GKGCMC	2 cut(s)	958, 1166
BalI	TGGCCA	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	4 cut(s)	1066, 1163, 1328, 1725
BanII	GRGCYC	2 cut(s)	844, 958
BbsI	GAAGAC	1 cut(s)	1610
Bbv12I	GWGCWC	1 cut(s)	844
BbvI	GCAGC	6 cut(s)	90, 122, 151, 436, 439, 442
BccI	CCATC	5 cut(s)	106, 968, 1056, 1319, 1400
BciT130I	CCWGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	6 cut(s)	26, 260, 986, 995, 1183, 1572
BfaI	CTAG	3 cut(s)	1128, 1461, 1526
BfmI	CTRYAG	1 cut(s)	1736
BfoI	RGCGCY	2 cut(s)	328, 404
BfuAI	ACCTGC	3 cut(s)	365, 436, 680
BisI	GCNGC	8 cut(s)	104, 136, 165, 450, 453, 456, 676, 811
BlnI	CCTAGG	1 cut(s)	1127
BlsI	GCNGC	8 cut(s)	105, 137, 166, 451, 454, 457, 677, 812
Bme1390I	CCNGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
Bme18I	GGWCC	1 cut(s)	817
BmeRI	GACNNNNNGTC	1 cut(s)	1614
BmeT110I	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
BmgT120I	GGNCC	4 cut(s)	817, 954, 955, 1705
BmiI	GGNNCC	7 cut(s)	955, 956, 1068, 1080, 1165, 1330, 1727
BmrFI	CCNGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
BmsI	GCATC	6 cut(s)	106, 252, 295, 361, 764, 1728
BoxI	GACNNNNGTC	1 cut(s)	1256
BpiI	GAAGAC	1 cut(s)	1610
Bpu14I	TTCGAA	1 cut(s)	1056
BpuEI	CTTGAG	2 cut(s)	427, 593
BsaI	GGTCTC	3 cut(s)	26, 260, 1183
BsaJI	CCNNGG	5 cut(s)	735, 761, 1127, 1192, 1702
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	4 cut(s)	554, 584, 826, 856
Bsc4I	CCNNNNNNNGG	6 cut(s)	295, 1133, 1300, 1338, 1339, 1438
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	3 cut(s)	199, 533, 820
BseBI	CCWGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
BseDI	CCNNGG	5 cut(s)	735, 761, 1127, 1192, 1702
BseGI	GGATG	7 cut(s)	121, 267, 310, 779, 1024, 1330, 1408
BseLI	CCNNNNNNNGG	6 cut(s)	295, 1133, 1300, 1338, 1339, 1438
BseMII	CTCAG	2 cut(s)	219, 290
BseNI	ACTGG	3 cut(s)	199, 533, 820
BseSI	GKGCMC	2 cut(s)	958, 1166
BseXI	GCAGC	6 cut(s)	90, 122, 151, 436, 439, 442
BseYI	CCCAGC	1 cut(s)	222
Bsh1236I	CGCG	2 cut(s)	43, 90
BshFI	GGCC	5 cut(s)	153, 813, 956, 1132, 1707
BshNI	GGYRCC	4 cut(s)	1066, 1163, 1328, 1725
BshTI	ACCGGT	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	844
BsiHKCI	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
BsiSI	CCGG	2 cut(s)	312, 1076
BslI	CCNNNNNNNGG	6 cut(s)	295, 1133, 1300, 1338, 1339, 1438
BsmAI	GTCTC	6 cut(s)	26, 260, 986, 995, 1183, 1572
BsmBI	CGTCTC	1 cut(s)	1572
BsnI	GGCC	5 cut(s)	153, 813, 956, 1132, 1707
Bso31I	GGTCTC	3 cut(s)	26, 260, 1183
BsoBI	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
Bsp119I	TTCGAA	1 cut(s)	1056
Bsp120I	GGGCCC	1 cut(s)	954
Bsp1286I	GDGCHC	3 cut(s)	844, 958, 1166
Bsp143I	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
BspACI	CCGC	6 cut(s)	286, 601, 676, 810, 942, 1427
BspANI	GGCC	5 cut(s)	153, 813, 956, 1132, 1707
BspCNI	CTCAG	2 cut(s)	220, 289
BspFNI	CGCG	2 cut(s)	43, 90
BspHI	TCATGA	1 cut(s)	1455
BspLI	GGNNCC	7 cut(s)	955, 956, 1068, 1080, 1165, 1330, 1727
BspMAI	CTGCAG	1 cut(s)	1740
BspMI	ACCTGC	3 cut(s)	365, 436, 680
BspPI	GGATC	6 cut(s)	70, 75, 1040, 1073, 1086, 1183
BspT104I	TTCGAA	1 cut(s)	1056
BspT107I	GGYRCC	4 cut(s)	1066, 1163, 1328, 1725
BspTNI	GGTCTC	3 cut(s)	26, 260, 1183
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	3 cut(s)	199, 533, 820
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	5 cut(s)	735, 761, 1127, 1192, 1702
BssMI	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
BssT1I	CCWWGG	2 cut(s)	735, 1127
Bst2UI	CCWGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
Bst4CI	ACNGT	3 cut(s)	172, 587, 1121
BstBI	TTCGAA	1 cut(s)	1056
BstC8I	GCNNGC	4 cut(s)	101, 447, 720, 808
BstDEI	CTNAG	3 cut(s)	27, 228, 276
BstEII	GGTNACC	1 cut(s)	1121
BstF5I	GGATG	7 cut(s)	121, 267, 310, 779, 1024, 1330, 1408
BstFNI	CGCG	2 cut(s)	43, 90
BstH2I	RGCGCY	2 cut(s)	328, 404
BstHHI	GCGC	3 cut(s)	327, 403, 686
BstKTI	GATC	9 cut(s)	78, 83, 148, 237, 832, 1048, 1081, 1191, 1525
BstMAI	GTCTC	6 cut(s)	26, 260, 986, 995, 1183, 1572
BstMBI	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 398, 455, 681, 690, 724
BstNI	CCWGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
BstPAI	GACNNNNGTC	1 cut(s)	1256
BstPI	GGTNACC	1 cut(s)	1121
BstSCI	CCNGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
BstSFI	CTRYAG	1 cut(s)	1736
BstSLI	GKGCMC	2 cut(s)	958, 1166
BstUI	CGCG	2 cut(s)	43, 90
BstV1I	GCAGC	6 cut(s)	90, 122, 151, 436, 439, 442
BstV2I	GAAGAC	1 cut(s)	1610
BstX2I	RGATCY	3 cut(s)	75, 1078, 1188
BstXI	CCANNNNNNTGG	1 cut(s)	1174
BstYI	RGATCY	3 cut(s)	75, 1078, 1188
BsuRI	GGCC	5 cut(s)	153, 813, 956, 1132, 1707
BtgZI	GCGATG	1 cut(s)	1586
BtsCI	GGATG	7 cut(s)	121, 267, 310, 779, 1024, 1330, 1408
BtsIMutI	CAGTG	3 cut(s)	148, 168, 1103
BveI	ACCTGC	3 cut(s)	365, 436, 680
Cac8I	GCNNGC	4 cut(s)	101, 447, 720, 808
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	1455
CfoI	GCGC	3 cut(s)	327, 403, 686
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	4 cut(s)	817, 954, 955, 1705
CseI	GACGC	3 cut(s)	79, 1305, 1604
Csp6I	GTAC	4 cut(s)	355, 532, 1137, 1329
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	8 cut(s)	71, 149, 179, 630, 1159, 1334, 1345, 1456
CviQI	GTAC	4 cut(s)	355, 532, 1137, 1329
DdeI	CTNAG	3 cut(s)	27, 228, 276
DpnI	GATC	9 cut(s)	77, 82, 147, 236, 831, 1047, 1080, 1190, 1524
DpnII	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
DriI	GACNNNNNGTC	1 cut(s)	1614
EaeI	YGGCCR	1 cut(s)	151
Eam1105I	GACNNNNNGTC	1 cut(s)	1614
Ecl136II	GAGCTC	1 cut(s)	842
Eco130I	CCWWGG	2 cut(s)	735, 1127
Eco147I	AGGCCT	1 cut(s)	1132
Eco24I	GRGCYC	2 cut(s)	844, 958
Eco31I	GGTCTC	3 cut(s)	26, 260, 1183
Eco47I	GGWCC	1 cut(s)	817
Eco47III	AGCGCT	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	124
Eco88I	CYCGRG	5 cut(s)	257, 837, 908, 1180, 1558
Eco91I	GGTNACC	1 cut(s)	1121
EcoICRI	GAGCTC	1 cut(s)	842
EcoO109I	RGGNCCY	2 cut(s)	954, 955
EcoO65I	GGTNACC	1 cut(s)	1121
EcoRII	CCWGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
EcoT14I	CCWWGG	2 cut(s)	735, 1127
EcoT38I	GRGCYC	2 cut(s)	844, 958
ErhI	CCWWGG	2 cut(s)	735, 1127
Esp3I	CGTCTC	1 cut(s)	1572
FaeI	CATG	8 cut(s)	74, 152, 182, 633, 1162, 1337, 1348, 1459
FalI	AAGNNNNNCTT	2 cut(s)	910, 942
FatI	CATG	8 cut(s)	70, 148, 178, 629, 1158, 1333, 1344, 1455
FauI	CCCGC	1 cut(s)	935
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	2 cut(s)	56, 1314
Fnu4HI	GCNGC	8 cut(s)	104, 136, 165, 450, 453, 456, 676, 811
FokI	GGATG	7 cut(s)	128, 274, 317, 786, 1011, 1337, 1415
FriOI	GRGCYC	2 cut(s)	844, 958
Fsp4HI	GCNGC	8 cut(s)	104, 136, 165, 450, 453, 456, 676, 811
FspBI	CTAG	3 cut(s)	1128, 1461, 1526
GlaI	GCGC	3 cut(s)	326, 402, 685
GluI	GCNGC	8 cut(s)	104, 136, 165, 450, 453, 456, 676, 811
GsaI	CCCAGC	1 cut(s)	226
HaeII	RGCGCY	2 cut(s)	328, 404
HaeIII	GGCC	5 cut(s)	153, 813, 956, 1132, 1707
HapII	CCGG	2 cut(s)	312, 1076
HgaI	GACGC	3 cut(s)	79, 1305, 1604
HhaI	GCGC	3 cut(s)	327, 403, 686
Hin1II	CATG	8 cut(s)	74, 152, 182, 633, 1162, 1337, 1348, 1459
Hin6I	GCGC	3 cut(s)	325, 401, 684
HinP1I	GCGC	3 cut(s)	325, 401, 684
HincII	GTYRAC	3 cut(s)	57, 967, 1315
HindII	GTYRAC	3 cut(s)	57, 967, 1315
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	7 cut(s)	14, 23, 514, 859, 1202, 1377, 1652
HpaI	GTTAAC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	312, 1076
HphI	GGTGA	6 cut(s)	389, 661, 816, 1133, 1416, 1510
Hpy166II	GTNNAC	8 cut(s)	57, 210, 915, 967, 1001, 1139, 1251, 1315
Hpy188I	TCNGA	7 cut(s)	22, 80, 219, 279, 762, 1201, 1295
Hpy188III	TCNNGA	9 cut(s)	238, 259, 406, 473, 908, 1180, 1456, 1567, 1656
Hpy8I	GTNNAC	8 cut(s)	57, 210, 915, 967, 1001, 1139, 1251, 1315
Hpy99I	CGWCG	6 cut(s)	95, 539, 794, 1299, 1586, 1589
HpyAV	CCTTC	4 cut(s)	470, 503, 1300, 1678
HpyCH4III	ACNGT	3 cut(s)	172, 587, 1121
HpyCH4IV	ACGT	5 cut(s)	594, 696, 792, 969, 1233
HpyCH4V	TGCA	8 cut(s)	374, 639, 693, 712, 732, 777, 1154, 1738
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 398, 455, 681, 690, 724
HpyF3I	CTNAG	3 cut(s)	27, 228, 276
HpySE526I	ACGT	5 cut(s)	594, 696, 792, 969, 1233
Hsp92II	CATG	8 cut(s)	74, 152, 182, 633, 1162, 1337, 1348, 1459
HspAI	GCGC	3 cut(s)	325, 401, 684
KpnI	GGTACC	1 cut(s)	1332
Ksp22I	TGATCA	1 cut(s)	145
KspAI	GTTAAC	1 cut(s)	967
Kzo9I	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
LmnI	GCTCC	2 cut(s)	219, 847
Lsp1109I	GCAGC	6 cut(s)	90, 122, 151, 436, 439, 442
LweI	GCATC	6 cut(s)	106, 252, 295, 361, 764, 1728
MaeI	CTAG	3 cut(s)	1128, 1461, 1526
MaeII	ACGT	5 cut(s)	594, 696, 792, 969, 1233
MaeIII	GTNAC	4 cut(s)	590, 822, 1121, 1258
MalI	GATC	9 cut(s)	77, 82, 147, 236, 831, 1047, 1080, 1190, 1524
MboI	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
MboII	GAAGA	3 cut(s)	9, 392, 1610
MflI	RGATCY	3 cut(s)	75, 1078, 1188
MhlI	GDGCHC	3 cut(s)	844, 958, 1166
MlsI	TGGCCA	1 cut(s)	153
MluI	ACGCGT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	2 cut(s)	868, 1386
MmeI	TCCRAC	2 cut(s)	87, 1318
Mox20I	TGGCCA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	6 cut(s)	366, 491, 966, 1395, 1416, 1756
MslI	CAYNNNNRTG	1 cut(s)	183
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	312, 1076
MspR9I	CCNGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
MvaI	CCWGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
MvnI	CGCG	2 cut(s)	43, 90
MwoI	GCNNNNNNNGC	6 cut(s)	96, 398, 455, 681, 690, 724
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
NlaIII	CATG	8 cut(s)	74, 152, 182, 633, 1162, 1337, 1348, 1459
NlaIV	GGNNCC	7 cut(s)	955, 956, 1068, 1080, 1165, 1330, 1727
NmeAIII	GCCGAG	2 cut(s)	882, 909
NmuCI	GTSAC	3 cut(s)	822, 1121, 1258
NspV	TTCGAA	1 cut(s)	1056
PaeR7I	CTCGAG	3 cut(s)	837, 1180, 1558
PagI	TCATGA	1 cut(s)	1455
PaqCI	CACCTGC	2 cut(s)	365, 680
PceI	AGGCCT	1 cut(s)	1132
PcsI	WCGNNNNNNNCGW	3 cut(s)	591, 906, 1565
PdmI	GAANNNNTTC	1 cut(s)	513
PfeI	GAWTC	5 cut(s)	14, 23, 514, 1202, 1652
PflMI	CCANNNNNTGG	1 cut(s)	1438
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	8 cut(s)	105, 137, 166, 451, 454, 457, 677, 812
PleI	GAGTC	2 cut(s)	867, 1385
PpsI	GAGTC	2 cut(s)	867, 1385
PshAI	GACNNNNGTC	1 cut(s)	1256
Psp124BI	GAGCTC	1 cut(s)	844
Psp1406I	AACGTT	1 cut(s)	969
Psp6I	CCWGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
PspEI	GGTNACC	1 cut(s)	1121
PspFI	CCCAGC	1 cut(s)	222
PspGI	CCWGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
PspN4I	GGNNCC	7 cut(s)	955, 956, 1068, 1080, 1165, 1330, 1727
PspOMI	GGGCCC	1 cut(s)	954
PspPI	GGNCC	4 cut(s)	817, 954, 955, 1705
PspXI	VCTCGAGB	2 cut(s)	837, 1558
PstI	CTGCAG	1 cut(s)	1740
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	75, 1078, 1188
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	356, 533, 1138, 1330
RsaNI	GTAC	4 cut(s)	355, 532, 1137, 1329
RseI	CAYNNNNRTG	1 cut(s)	183
SacI	GAGCTC	1 cut(s)	844
SalI	GTCGAC	2 cut(s)	55, 1313
SaqAI	TTAA	6 cut(s)	366, 491, 966, 1395, 1416, 1756
SatI	GCNGC	8 cut(s)	104, 136, 165, 450, 453, 456, 676, 811
Sau3AI	GATC	9 cut(s)	75, 80, 145, 234, 829, 1045, 1078, 1188, 1522
Sau96I	GGNCC	4 cut(s)	817, 954, 955, 1705
SchI	GAGTC	2 cut(s)	868, 1386
ScrFI	CCNGG	6 cut(s)	155, 815, 1134, 1194, 1679, 1703
SduI	GDGCHC	3 cut(s)	844, 958, 1166
SfaNI	GCATC	6 cut(s)	106, 252, 295, 361, 764, 1728
SfcI	CTRYAG	1 cut(s)	1736
Sfr274I	CTCGAG	3 cut(s)	837, 1180, 1558
SfuI	TTCGAA	1 cut(s)	1056
SinI	GGWCC	1 cut(s)	817
SlaI	CTCGAG	3 cut(s)	837, 1180, 1558
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	5 cut(s)	406, 608, 837, 1180, 1558
SmoI	CTYRAG	5 cut(s)	406, 608, 837, 1180, 1558
SseBI	AGGCCT	1 cut(s)	1132
SsiI	CCGC	6 cut(s)	286, 601, 676, 810, 942, 1427
SspMI	CTAG	3 cut(s)	1128, 1461, 1526
SstI	GAGCTC	1 cut(s)	844
StuI	AGGCCT	1 cut(s)	1132
StyD4I	CCNGG	6 cut(s)	153, 813, 1132, 1192, 1677, 1701
StyI	CCWWGG	2 cut(s)	735, 1127
TaaI	ACNGT	3 cut(s)	172, 587, 1121
TaiI	ACGT	5 cut(s)	597, 699, 795, 972, 1236
TaqI	TCGA	9 cut(s)	56, 93, 617, 838, 1044, 1056, 1181, 1314, 1559
TauI	GCSGC	2 cut(s)	678, 813
TfiI	GAWTC	5 cut(s)	14, 23, 514, 1202, 1652
Tru1I	TTAA	6 cut(s)	366, 491, 966, 1395, 1416, 1756
Tru9I	TTAA	6 cut(s)	366, 491, 966, 1395, 1416, 1756
TscAI	CASTG	3 cut(s)	148, 175, 1110
TseFI	GTSAC	3 cut(s)	822, 1121, 1258
TseI	GCWGC	6 cut(s)	103, 135, 164, 449, 452, 455
Tsp45I	GTSAC	3 cut(s)	822, 1121, 1258
TspDTI	ATGAA	2 cut(s)	167, 453
TspRI	CASTG	3 cut(s)	148, 175, 1110
Van91I	CCANNNNNTGG	1 cut(s)	1438
VpaK11BI	GGWCC	1 cut(s)	817
XhoI	CTCGAG	3 cut(s)	837, 1180, 1558
XmaJI	CCTAGG	1 cut(s)	1127
XmiI	GTMKAC	2 cut(s)	56, 1314
XmnI	GAANNNNTTC	1 cut(s)	513
XspI	CTAG	3 cut(s)	1128, 1461, 1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.